Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G061000 Manihot esculenta HOM05D004304 ORTHO05D005229 4.5e-70 267.7 126 100.0
CAN.G854.8 Capsicum annuum HOM05D004304 ORTHO05D005229 3.8e-69 264.6 126 97.6
Ciclev10017178m.g Citrus clementina HOM05D004304 ORTHO05D005229 3.8e-69 264.6 126 97.6
Thecc.01G191600 Theobroma cacao HOM05D004304 ORTHO05D005229 3.8e-69 264.6 126 97.6
Cc00_g07360 Coffea canephora HOM05D004304 ORTHO05D005229 8.5e-69 263.5 126 97.6
Nitab4.5_0004642g0020 Nicotiana tabacum HOM05D004304 ORTHO05D005229 8.5e-69 263.5 126 97.6
Prupe.3G200700 Prunus persica HOM05D004304 ORTHO05D005229 8.5e-69 263.5 126 97.6
FvH4_6g40920 Fragaria vesca HOM05D004304 ORTHO05D005229 1.1e-68 263.1 126 97.6
FAN05G0096 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.1e-68 263.1 126 97.6
RcHm_v2.0_Chr2g0156501 Rosa chinensis HOM05D004304 ORTHO05D005229 1.1e-68 263.1 126 97.6
Sopen07g024320 Solanum pennellii HOM05D004304 ORTHO05D005229 1.1e-68 263.1 126 97.6
PGSC0003DMG400006152 Solanum tuberosum HOM05D004304 ORTHO05D005229 1.1e-68 263.1 126 97.6
CANSAT64G1042 Cannabis sativa HOM05D004304 ORTHO05D005229 1.9e-68 262.3 126 96.8
Duzib133G1241 Durio zibethinus HOM05D004304 ORTHO05D005229 1.9e-68 262.3 126 96.8
HanXRQChr03g0075261 Helianthus annuus HOM05D004304 ORTHO05D005229 1.9e-68 262.3 126 96.8
AUR62017517 Chenopodium quinoa HOM05D004304 ORTHO05D005229 2.5e-68 261.9 126 96.0
Gohir.A11G149700 Gossypium hirsutum HOM05D004304 ORTHO05D005229 2.5e-68 261.9 126 96.8
Gohir.D11G156380 Gossypium hirsutum HOM05D004304 ORTHO05D005229 2.5e-68 261.9 126 96.8
Gorai.007G166800 Gossypium raimondii HOM05D004304 ORTHO05D005229 2.5e-68 261.9 126 96.8
GSVIVG01030050001 Vitis vinifera HOM05D004304 ORTHO05D005229 2.5e-68 261.9 126 97.6
Atru.chr6.3369 Acer truncatum HOM05D004304 ORTHO05D005229 3.2e-68 261.5 126 96.8
CSS0022075 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 3.2e-68 261.5 126 96.0
Dinv07865 Davidia involucrata HOM05D004304 ORTHO05D005229 3.2e-68 261.5 126 96.0
FAN02G3860 Fragaria x ananassa HOM05D004304 ORTHO05D005229 3.2e-68 261.5 126 96.8
FAN09G2975 Fragaria x ananassa HOM05D004304 ORTHO05D005229 3.2e-68 261.5 126 96.8
MD17G1113700 Malus domestica HOM05D004304 ORTHO05D005229 3.2e-68 261.5 126 96.8
Nitab4.5_0000441g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 3.2e-68 261.5 126 96.0
MD09G1123200 Malus domestica HOM05D004304 ORTHO05D005229 4.2e-68 261.2 126 96.8
Potri.014G165300 Populus trichocarpa HOM05D004304 ORTHO05D005229 5.5e-68 260.8 126 96.0
PGR042G2803 Punica granatum HOM05D004304 ORTHO05D005229 5.5e-68 260.8 126 95.2
Duzib138G0739 Durio zibethinus HOM05D004304 ORTHO05D005229 9.4e-68 260.0 124 97.6
Duzib138G1664 Durio zibethinus HOM05D004304 ORTHO05D005229 9.4e-68 260.0 124 97.6
FAN14G5814 Fragaria x ananassa HOM05D004304 ORTHO05D005229 9.4e-68 260.0 126 96.8
THA.LOC104819042 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 1.2e-67 259.6 126 96.0
Actinidia21445 Actinidia chinensis HOM05D004304 ORTHO05D005229 1.6e-67 259.2 126 95.2
ClCG02G009350 Citrullus lanatus HOM05D004304 ORTHO05D005229 1.6e-67 259.2 126 96.0
Sed0000663 Sechium edule HOM05D004304 ORTHO05D005229 1.6e-67 259.2 126 96.0
Gohir.A07G087600 Gossypium hirsutum HOM05D004304 ORTHO05D005229 2.1e-67 258.8 126 95.2
Hma1.2p1_0133F.1_g061310 Hydrangea macrophylla HOM05D004304 ORTHO05D005229 2.1e-67 258.8 126 95.2
CsaV3_6G009500 Cucumis sativus L. HOM05D004304 ORTHO05D005229 4.7e-67 257.7 126 95.2
Gohir.D07G092500 Gossypium hirsutum HOM05D004304 ORTHO05D005229 4.7e-67 257.7 126 95.2
Gorai.001G099100 Gossypium raimondii HOM05D004304 ORTHO05D005229 4.7e-67 257.7 126 95.2
TWI75G1244 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 6.1e-67 257.3 126 96.0
CSS0042456 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 8.0e-67 256.9 126 95.2
CiPaw.03G279300 Carya illinoinensis HOM05D004304 ORTHO05D005229 8.0e-67 256.9 126 95.2
TWI18G0278 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 8.0e-67 256.9 126 95.2
Actinidia07885 Actinidia chinensis HOM05D004304 ORTHO05D005229 1.0e-66 256.5 126 92.9
PGSC0003DMG400028823 Solanum tuberosum HOM05D004304 ORTHO05D005229 1.4e-66 256.1 126 93.7
vmacro12102 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 1.4e-66 256.1 126 92.1
MELO3C025975.2 Cucumis melo HOM05D004304 ORTHO05D005229 1.8e-66 255.8 126 94.4
Eucgr.A01049 Eucalyptus grandis HOM05D004304 ORTHO05D005229 1.8e-66 255.8 126 93.7
Solyc12g006160.2 Solanum lycopersicum HOM05D004304 ORTHO05D005229 1.8e-66 255.8 126 92.9
Sopen12g002110 Solanum pennellii HOM05D004304 ORTHO05D005229 1.8e-66 255.8 126 92.9
vmacro09397 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 1.8e-66 255.8 126 92.1
CAN.G294.16 Capsicum annuum HOM05D004304 ORTHO05D005229 2.3e-66 255.4 126 92.9
Sc20g0003970 Simmondsia chinensis HOM05D004304 ORTHO05D005229 2.3e-66 255.4 124 95.2
Aqoxy1G04225 Aquilegia oxysepala HOM05D004304 ORTHO05D005229 3.0e-66 255.0 126 92.9
DCAR_019709 Daucus carota HOM05D004304 ORTHO05D005229 3.0e-66 255.0 124 94.4
MSTRG.6645 Avicennia marina HOM05D004304 ORTHO05D005229 5.2e-66 254.2 124 94.4
THA.LOC104826653 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 5.2e-66 254.2 126 94.4
FvH4_5g30980 Fragaria vesca HOM05D004304 ORTHO05D005229 6.8e-66 253.8 125 93.6
FAN13G0518 Fragaria x ananassa HOM05D004304 ORTHO05D005229 6.8e-66 253.8 125 93.6
FAN18G2534 Fragaria x ananassa HOM05D004304 ORTHO05D005229 6.8e-66 253.8 125 93.6
TAR624G1210 Trochodendron aralioides HOM05D004304 ORTHO05D005229 6.8e-66 253.8 126 93.7
Nn1g07447 Nelumbo nucifera HOM05D004304 ORTHO05D005229 8.8e-66 253.4 126 92.9
TAR627G0777 Trochodendron aralioides HOM05D004304 ORTHO05D005229 8.8e-66 253.4 126 93.7
MSTRG.14924 Avicennia marina HOM05D004304 ORTHO05D005229 1.5e-65 252.7 123 92.7
Actinidia09779 Actinidia chinensis HOM05D004304 ORTHO05D005229 2.0e-65 252.3 126 92.9
FAN08G1359 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.0e-65 252.3 125 92.8
Nitab4.5_0001229g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 2.0e-65 252.3 126 92.1
Nitab4.5_0005511g0040 Nicotiana tabacum HOM05D004304 ORTHO05D005229 2.0e-65 252.3 126 92.1
PGR142G2829 Punica granatum HOM05D004304 ORTHO05D005229 2.0e-65 252.3 126 92.9
Os12g0514600 Oryza sativa ssp. japonica HOM05D004304 ORTHO05D005229 5.7e-65 250.8 126 91.3
Glyma.02G305100 Glycine max HOM05D004304 ORTHO05D005229 7.5e-65 250.4 126 92.9
Medtr5g097240 Medicago truncatula HOM05D004304 ORTHO05D005229 7.5e-65 250.4 126 92.9
Phvul.008G284800 Phaseolus vulgaris HOM05D004304 ORTHO05D005229 7.5e-65 250.4 126 92.9
RcHm_v2.0_Chr7g0226381 Rosa chinensis HOM05D004304 ORTHO05D005229 9.8e-65 250.0 126 92.1
TPR.G1269 Trifolium pratense HOM05D004304 ORTHO05D005229 1.3e-64 249.6 126 92.1
Gohir.D07G171200 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.7e-64 249.2 124 91.9
Gorai.001G191600 Gossypium raimondii HOM05D004304 ORTHO05D005229 1.7e-64 249.2 124 91.9
Gohir.A07G170000 Gossypium hirsutum HOM05D004304 ORTHO05D005229 2.2e-64 248.8 124 91.9
Migut.M00031 Erythranthe guttata HOM05D004304 ORTHO05D005229 3.7e-64 248.1 128 93.0
Glyma.14G008300 Glycine max HOM05D004304 ORTHO05D005229 3.7e-64 248.1 126 92.1
PSO302G0206 Papaver somniferum HOM05D004304 ORTHO05D005229 8.3e-64 246.9 126 89.7
LjContig00081g0006376 Lotus japonicus HOM05D004304 ORTHO05D005229 1.1e-63 246.5 126 90.5
Lalb_Chr10g0107601 Lupinus albus HOM05D004304 ORTHO05D005229 1.1e-63 246.5 126 91.3
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 1.1e-63 246.5 124 91.9
PSO210G6619 Papaver somniferum HOM05D004304 ORTHO05D005229 1.1e-63 246.5 126 88.9
CiPaw.04G196300 Carya illinoinensis HOM05D004304 ORTHO05D005229 1.4e-63 246.1 124 91.9
CARHR082470 Cardamine hirsuta HOM05D004304 ORTHO05D005229 1.8e-63 245.7 124 91.9
Thhalv10021767m.g Eutrema salsugineum HOM05D004304 ORTHO05D005229 1.8e-63 245.7 124 91.9
Sp3g06690 Schrenkiella parvula HOM05D004304 ORTHO05D005229 1.8e-63 245.7 124 91.9
arahy.Tifrunner.gnm1.ann1.40Z2MJ Arachis hypogaea HOM05D004304 ORTHO05D005229 2.4e-63 245.4 126 90.5
arahy.Tifrunner.gnm1.ann1.F2KZWM Arachis hypogaea HOM05D004304 ORTHO05D005229 2.4e-63 245.4 126 90.5
ATR1149G091 Amborella trichopoda HOM05D004304 ORTHO05D005229 3.1e-63 245.0 126 88.9
Zm00001eb137890 Zea mays HOM05D004304 ORTHO05D005229 7.0e-63 243.8 126 88.1
AL3G19120 Arabidopsis lyrata HOM05D004304 ORTHO05D005229 1.2e-62 243.0 124 90.3
AT3G07760 Arabidopsis thaliana HOM05D004304 ORTHO05D005229 1.2e-62 243.0 124 90.3
Carub.0003s0734 Capsella rubella HOM05D004304 ORTHO05D005229 2.0e-62 242.3 124 90.3
BcaC05g29569 Brassica carinata HOM05D004304 ORTHO05D005229 2.7e-62 241.9 124 90.3
A05p40460 Brassica napus HOM05D004304 ORTHO05D005229 2.7e-62 241.9 124 90.3
C05p59560 Brassica napus HOM05D004304 ORTHO05D005229 2.7e-62 241.9 124 90.3
BolC5t34611H Brassica oleracea HOM05D004304 ORTHO05D005229 2.7e-62 241.9 124 90.3
BraA05t22779Z Brassica rapa HOM05D004304 ORTHO05D005229 2.7e-62 241.9 124 90.3
Aa31LG5G18330 Aethionema arabicum HOM05D004304 ORTHO05D005229 3.5e-62 241.5 151 78.1
Lalb_Chr04g0247321 Lupinus albus HOM05D004304 ORTHO05D005229 3.5e-62 241.5 126 88.9
Lalb_Chr04g0247511 Lupinus albus HOM05D004304 ORTHO05D005229 3.5e-62 241.5 126 88.9
SGA_v2.0_scaffold181G39677 Striga asiatica HOM05D004304 ORTHO05D005229 4.5e-62 241.1 124 91.1
Zm00001eb166190 Zea mays HOM05D004304 ORTHO05D005229 7.7e-62 240.4 124 87.9
Zm00001eb264410 Zea mays HOM05D004304 ORTHO05D005229 7.7e-62 240.4 126 85.7
TWI36G1037 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 2.3e-61 238.8 157 75.2
HPP92_009568 Vanilla planifolia HOM05D004304 ORTHO05D005229 2.3e-61 238.8 125 86.4
ECA240G0131 Erigeron canadensis HOM05D001343 ORTHO05D002008 2.9e-61 238.4 112 97.3
BcaB03g14683 Brassica carinata HOM05D004304 ORTHO05D005229 3.8e-61 238.0 123 89.4
BraA03t12719Z Brassica rapa HOM05D004304 ORTHO05D005229 6.6e-61 237.3 124 88.7
BcaC09g47944 Brassica carinata HOM05D004304 ORTHO05D005229 8.6e-61 236.9 121 90.9
A03p35420 Brassica napus HOM05D004304 ORTHO05D005229 8.6e-61 236.9 124 88.7
BcaB04g21271 Brassica carinata HOM05D004304 ORTHO05D005229 1.9e-60 235.7 119 92.4
BolC1t05535H Brassica oleracea HOM05D004304 ORTHO05D005229 1.9e-60 235.7 119 92.4
HanXRQChr10g0306431 Helianthus annuus HOM05D004304 ORTHO05D005229 1.9e-60 235.7 124 88.7
BraA01t04365Z Brassica rapa HOM05D004304 ORTHO05D005229 2.5e-60 235.3 119 91.6
Rhsim04G0038800 Rhododendron simsii HOM05D004304 ORTHO05D005229 4.2e-60 234.6 171 68.4
SGA_v2.0_scaffold73G24513 Striga asiatica HOM05D004304 ORTHO05D005229 4.7e-59 231.1 130 84.6
CDE07G1815 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 2.3e-58 228.8 126 82.5
SEGI_33416 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 5.2e-58 227.6 120 87.5
CDE04G0517 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 8.9e-58 226.9 126 81.0
unitig_37.g12596 Utricularia gibba HOM05D004304 ORTHO05D005229 5.7e-57 224.2 138 79.0
MSTRG.12237 Avicennia marina HOM05D004304 ORTHO05D005229 9.8e-57 223.4 124 86.3
MBI16_g26392_MAGBIO Magnolia biondii HOM05D004304 ORTHO05D005229 3.2e-55 218.4 114 89.5
Peaxi162Scf00047g02135 Petunia axillaris HOM05D004304 ORTHO05D005229 3.2e-55 218.4 112 92.0
TAR624G0596 Trochodendron aralioides HOM05D004304 ORTHO05D005229 3.2e-55 218.4 109 92.7
SMO147G0193 Selaginella moellendorffii HOM05D004304 ORTHO05D005229 4.1e-55 218.0 126 77.0
SEGI_10863 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 4.1e-55 218.0 126 77.0
Eucgr.K00654 Eucalyptus grandis HOM05D004304 ORTHO05D005229 5.4e-55 217.6 114 88.6
THA.LOC109116190 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 1.1e-52 209.9 108 91.7
FAN04G0826 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.8e-50 202.6 149 69.1
Lsat_1_v5_gn_9_104560 Lactuca sativa HOM05D004304 ORTHO05D005229 1.2e-46 189.9 124 76.6
Dinv05830 Davidia involucrata HOM05D004304 ORTHO05D005229 6.6e-45 184.1 111 79.3
CSS0024587 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 1.9e-44 182.6 100 88.0
Dinv21270 Davidia involucrata HOM05D004304 ORTHO05D005229 7.3e-44 180.6 87 94.3
Manes.13G062800 Manihot esculenta HOM05D004304 ORTHO05D005229 4.7e-43 177.9 82 98.8
QL08p028475 Quercus lobata HOM05D004304 ORTHO05D005229 6.8e-42 174.1 82 97.6
Sed0023039 Sechium edule HOM05D004304 ORTHO05D005229 6.8e-42 174.1 85 92.9
BcaC01g04291 Brassica carinata HOM05D000074 ORTHO05D001293 2.6e-41 172.2 134 66.4
Haze_12682 Corylus avellana HOM05D004304 ORTHO05D005229 4.4e-41 171.4 82 96.3
AUR62015060 Chenopodium quinoa HOM05D004304 ORTHO05D005229 1.7e-40 169.5 126 67.5
VMungo0647G2439 Vigna mungo HOM05D004304 ORTHO05D005229 3.7e-40 168.3 82 93.9
SalBow7G0104 Salvia bowleyana HOM05D004304 ORTHO05D005229 1.1e-39 166.8 83 92.8
DCAR_012907 Daucus carota HOM05D004304 ORTHO05D005229 7.1e-39 164.1 77 96.1
Psat2g004600 Pisum sativum HOM05D004304 ORTHO05D005229 1.6e-38 162.9 82 89.0
Sabra14G0125900 Salix brachista HOM05D004304 ORTHO05D005229 4.6e-38 161.4 110 72.7
FAN04G0834 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.7e-37 159.5 177 50.3
Oeu040468.1 Olea europaea HOM05D004304 ORTHO05D005229 1.7e-37 159.5 78 94.9
Oeu063643.1 Olea europaea HOM05D004304 ORTHO05D005229 3.6e-35 151.8 78 89.7
DCAR_021105 Daucus carota HOM05D004304 ORTHO05D005229 1.8e-34 149.4 124 61.3
BcaB04g17145 Brassica carinata HOM05D004304 ORTHO05D000003 5.2e-34 147.9 78 88.5
unitig_46.g18340 Utricularia gibba HOM05D004304 ORTHO05D005229 3.4e-33 145.2 129 58.1
Cpa.g.c46948 Carica papaya HOM05D004304 ORTHO05D005229 2.4e-31 139.0 64 100.0
BcaB01g01337 Brassica carinata HOM05D004304 ORTHO05D005229 1.2e-30 136.7 73 84.9
SHI10146 Sapria himalayana HOM05D004304 ORTHO05D005229 1.0e-29 133.7 75 84.0
Hund21536 Selenicereus undatus HOM05D004304 ORTHO05D005229 3.6e-27 125.2 58 96.6
C03p43050 Brassica napus HOM05D004304 ORTHO05D005229 1.4e-26 123.2 123 54.5
BolC3t16573H Brassica oleracea HOM05D004304 ORTHO05D005229 1.4e-26 123.2 123 54.5
Ah.01g002230 Amaranthus hybridus HOM05D004304 ORTHO05D005229 2.2e-24 115.9 58 93.1
BcaB03g16127 Brassica carinata HOM05D004304 ORTHO05D005229 6.6e-21 104.4 57 86.0
Nn1g03242 Nelumbo nucifera HOM05D004304 ORTHO05D005229 1.7e-16 89.7 44 95.5
Solyc07g047890.4 Solanum lycopersicum HOM05D004304 ORTHO05D393077 4.2e-07 58.5 69 43.5


User provided reference genes

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