Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G060700 Manihot esculenta HOM05D006660 ORTHO05D008184 0.0e+00 1170.6 588 100.0
Thecc.01G186300 Theobroma cacao HOM05D006660 ORTHO05D008184 4.1e-283 977.6 588 83.5
Potri.014G163200 Populus trichocarpa HOM05D006660 ORTHO05D008184 7.6e-277 956.8 582 82.5
Sabra14G0124600 Salix brachista HOM05D006660 ORTHO05D008184 2.7e-274 948.3 583 82.5
PGR142G4370 Punica granatum HOM05D006660 ORTHO05D008184 1.6e-271 939.1 581 80.2
Duzib133G0254 Durio zibethinus HOM05D006660 ORTHO05D008184 8.1e-271 936.8 583 80.1
Prupe.3G205300 Prunus persica HOM05D006660 ORTHO05D008184 8.1e-271 936.8 576 80.9
Gorai.001G097700 Gossypium raimondii HOM05D006660 ORTHO05D008184 7.6e-269 930.2 571 80.9
TWI36G0095 Tripterygium wilfordii HOM05D006660 ORTHO05D008184 9.9e-269 929.9 576 81.2
CSS0034515 Camellia sinensis var. sinensis HOM05D006660 ORTHO05D008184 3.8e-268 927.9 577 80.9
RcHm_v2.0_Chr2g0157231 Rosa chinensis HOM05D006660 ORTHO05D008184 3.2e-267 924.9 585 80.5
Atru.chr6.3323 Acer truncatum HOM05D006660 ORTHO05D008184 6.6e-265 917.1 578 80.6
FAN02G1797 Fragaria x ananassa HOM05D006660 ORTHO05D008184 6.6e-265 917.1 588 79.3
Rhsim04G0045800 Rhododendron simsii HOM05D006660 ORTHO05D008184 2.5e-264 915.2 571 81.4
FvH4_6g41550 Fragaria vesca HOM05D006660 ORTHO05D008184 9.6e-264 913.3 589 79.1
FAN14G2696 Fragaria x ananassa HOM05D006660 ORTHO05D008184 9.6e-264 913.3 589 79.1
FAN14G4026 Fragaria x ananassa HOM05D006660 ORTHO05D008184 9.6e-264 913.3 589 79.1
Eucgr.K00713 Eucalyptus grandis HOM05D006660 ORTHO05D008184 6.2e-263 910.6 582 77.5
Ciclev10014722m.g Citrus clementina HOM05D006660 ORTHO05D008184 3.1e-262 908.3 565 80.5
Nn1g07385 Nelumbo nucifera HOM05D006660 ORTHO05D008184 1.2e-261 906.4 571 79.9
Actinidia10783 Actinidia chinensis HOM05D006660 ORTHO05D008184 5.8e-261 904.0 567 81.1
CANSAT64G1453 Cannabis sativa HOM05D006660 ORTHO05D008184 5.8e-261 904.0 568 79.9
FAN05G5067 Fragaria x ananassa HOM05D006660 ORTHO05D008184 5.8e-261 904.0 588 78.4
Nitab4.5_0000130g0170 Nicotiana tabacum HOM05D006660 ORTHO05D008184 9.9e-261 903.3 567 79.5
TAR626G1025 Trochodendron aralioides HOM05D006660 ORTHO05D008184 2.2e-260 902.1 566 80.4
Nitab4.5_0008746g0020 Nicotiana tabacum HOM05D006660 ORTHO05D008184 7.1e-259 897.1 568 79.6
arahy.Tifrunner.gnm1.ann1.V90YU5 Arachis hypogaea HOM05D006660 ORTHO05D008184 2.3e-257 892.1 569 78.6
arahy.Tifrunner.gnm1.ann1.7S53TL Arachis hypogaea HOM05D006660 ORTHO05D008184 6.7e-257 890.6 571 78.5
arahy.Tifrunner.gnm1.ann1.GN08CG Arachis hypogaea HOM05D006660 ORTHO05D008184 6.7e-257 890.6 571 78.5
Ca_16352_v3 Cicer arietinum L. HOM05D006660 ORTHO05D008184 1.5e-256 889.4 565 78.6
Solyc07g049590.3 Solanum lycopersicum HOM05D006660 ORTHO05D008184 1.5e-256 889.4 571 78.8
CAN.G784.8 Capsicum annuum HOM05D006660 ORTHO05D008184 1.9e-256 889.0 563 78.5
Medtr3g082870 Medicago truncatula HOM05D006660 ORTHO05D008184 1.3e-255 886.3 563 78.0
PGSC0003DMG400006428 Solanum tuberosum HOM05D006660 ORTHO05D008184 2.8e-255 885.2 564 79.3
Sopen07g024990 Solanum pennellii HOM05D006660 ORTHO05D008184 3.7e-255 884.8 571 78.5
Gohir.A07G086100 Gossypium hirsutum HOM05D006660 ORTHO05D008184 4.8e-255 884.4 571 78.1
Thhalv10002462m.g Eutrema salsugineum HOM05D006660 ORTHO05D008184 8.1e-255 883.6 581 75.9
PSO541G2904 Papaver somniferum HOM05D006660 ORTHO05D008184 1.1e-254 883.2 573 76.1
TPR.G22464 Trifolium pratense HOM05D006660 ORTHO05D008184 4.0e-254 881.3 579 75.5
Peaxi162Scf01333g00136 Petunia axillaris HOM05D006660 ORTHO05D008184 9.0e-254 880.2 564 78.7
Cc10_g08860 Coffea canephora HOM05D006660 ORTHO05D008184 1.5e-253 879.4 563 78.2
MELO3C019360.2 Cucumis melo HOM05D006660 ORTHO05D008184 3.4e-253 878.2 577 76.8
PSO675G7408 Papaver somniferum HOM05D006660 ORTHO05D008184 4.5e-253 877.9 573 76.1
Aa31sc53G10 Aethionema arabicum HOM05D006660 ORTHO05D008184 5.8e-253 877.5 581 75.4
CsaV3_2G034260 Cucumis sativus L. HOM05D006660 ORTHO05D008184 9.9e-253 876.7 579 76.7
THA.LOC104808860 Tarenaya hassleriana HOM05D006660 ORTHO05D008184 1.3e-252 876.3 586 74.7
Sed0019714 Sechium edule HOM05D006660 ORTHO05D008184 2.9e-252 875.2 580 76.7
ClCG02G009540 Citrullus lanatus HOM05D006660 ORTHO05D008184 9.3e-251 870.2 602 74.3
AL3G42350 Arabidopsis lyrata HOM05D006660 ORTHO05D008184 1.6e-250 869.4 582 74.4
Sp3g23370 Schrenkiella parvula HOM05D006660 ORTHO05D008184 2.1e-250 869.0 580 74.3
Carub.0003s2635 Capsella rubella HOM05D006660 ORTHO05D008184 6.0e-250 867.5 583 74.3
Sc20g0003860 Simmondsia chinensis HOM05D006660 ORTHO05D008184 1.0e-249 866.7 587 75.5
AT2G04740 Arabidopsis thaliana HOM05D006660 ORTHO05D008184 1.6e-247 859.4 589 73.0
Psat5g103920 Pisum sativum HOM05D006660 ORTHO05D008184 1.6e-247 859.4 594 73.4
COL.COLO4_35986 Corchorus olitorius HOM05D006660 ORTHO05D008184 4.8e-247 857.8 589 74.0
DCAR_019721 Daucus carota HOM05D006660 ORTHO05D008184 6.9e-246 854.0 562 76.7
CARHR102690 Cardamine hirsuta HOM05D006660 ORTHO05D008184 1.2e-245 853.2 583 73.6
Glyma.20G057100 Glycine max HOM05D006660 ORTHO05D008184 3.4e-245 851.7 570 74.6
AUR62015095 Chenopodium quinoa HOM05D006660 ORTHO05D008184 1.7e-244 849.4 582 72.9
Lj6g0000837 Lotus japonicus HOM05D006660 ORTHO05D008184 2.2e-244 849.0 558 76.3
MBI16_g31717_MAGBIO Magnolia biondii HOM05D006660 ORTHO05D008184 5.5e-243 844.3 571 74.8
BcaB08g34485 Brassica carinata HOM05D006660 ORTHO05D008184 1.3e-241 839.7 584 71.9
FAN09G0285 Fragaria x ananassa HOM05D006660 ORTHO05D008184 3.0e-241 838.6 583 75.1
Aqoxy1G02841 Aquilegia oxysepala HOM05D006660 ORTHO05D008184 6.7e-241 837.4 603 69.5
HanXRQChr10g0306331 Helianthus annuus HOM05D006660 ORTHO05D008184 1.5e-240 836.3 564 73.9
BolC3t17779H Brassica oleracea HOM05D006660 ORTHO05D008184 7.4e-240 833.9 585 71.5
Lsat_1_v5_gn_5_124741 Lactuca sativa HOM05D006660 ORTHO05D008184 1.3e-239 833.2 558 74.9
A03p44410 Brassica napus HOM05D006660 ORTHO05D008184 3.7e-239 831.6 584 71.4
MSTRG.14936 Avicennia marina HOM05D006660 ORTHO05D008184 4.8e-239 831.2 571 72.5
BcaC01g03192 Brassica carinata HOM05D006660 ORTHO05D008184 1.4e-238 829.7 584 71.2
C03p55040 Brassica napus HOM05D006660 ORTHO05D008184 4.1e-238 828.2 584 71.2
BraA03t13574Z Brassica rapa HOM05D006660 ORTHO05D008184 5.3e-238 827.8 585 71.1
EL10Ac3g05658 Beta vulgaris HOM05D006660 ORTHO05D008184 3.2e-235 818.5 564 71.8
HPP92_017850 Vanilla planifolia HOM05D006660 ORTHO05D008184 3.2e-235 818.5 569 72.6
AUR62017555 Chenopodium quinoa HOM05D006660 ORTHO05D008184 7.9e-234 813.9 639 66.2
SGA_v2.0_scaffold73G24530 Striga asiatica HOM05D006660 ORTHO05D008184 7.4e-232 807.4 566 71.6
Ah.14g082930 Amaranthus hybridus HOM05D006660 ORTHO05D008184 9.7e-232 807.0 570 70.9
Migut.M00006 Erythranthe guttata HOM05D006660 ORTHO05D008184 1.0e-228 797.0 572 72.2
Haze_12725 Corylus avellana HOM05D006660 ORTHO05D008184 5.9e-221 771.2 466 83.5
Zm00001eb281240 Zea mays HOM05D006660 ORTHO05D008184 3.7e-215 751.9 573 66.7
CiPaw.04G193900 Carya illinoinensis HOM05D006660 ORTHO05D008184 3.1e-214 748.8 472 80.5
Os06g0318200 Oryza sativa ssp. japonica HOM05D006660 ORTHO05D008184 2.7e-210 735.7 586 64.8
SEGI_29705 Sequoiadendron giganteum HOM05D006660 ORTHO05D008184 9.1e-206 720.7 632 61.2
ECA234G1491 Erigeron canadensis HOM05D006660 ORTHO05D008184 1.6e-205 719.9 561 67.7
Cpa.g.sc132.76 Carica papaya HOM05D006660 ORTHO05D008184 2.7e-202 709.1 469 76.3
vmacro09381 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 5.9e-189 664.8 417 81.3
Gohir.D07G091200 Gossypium hirsutum HOM05D006660 ORTHO05D008184 2.3e-185 652.9 422 77.0
Lalb_Chr24g0402731 Lupinus albus HOM05D006660 ORTHO05D008184 4.0e-185 652.1 416 77.9
Mapoly0031s0110 Marchantia polymorpha HOM05D006660 ORTHO05D008184 8.9e-185 651.0 643 55.2
VMungo1309G1541 Vigna mungo HOM05D006660 ORTHO05D008184 3.0e-180 636.0 434 74.2
Dinv07831 Davidia involucrata HOM05D006660 ORTHO05D008184 1.5e-179 633.6 405 78.0
Pp3c5_19510 Physcomitrium patens HOM05D006660 ORTHO05D008184 4.3e-179 632.1 613 55.3
Pp3c5_19514 Physcomitrium patens HOM05D006660 ORTHO05D008184 4.3e-179 632.1 613 55.3
Oeu040482.1 Olea europaea HOM05D006660 ORTHO05D008184 1.8e-169 600.1 402 74.9
MD17G1109800 Malus domestica HOM05D006660 ORTHO05D008184 2.0e-168 596.7 573 57.6
Atru.chr6.3318 Acer truncatum HOM05D006660 ORTHO05D008184 9.9e-168 594.3 400 76.2
ATR0712G111 Amborella trichopoda HOM05D006660 ORTHO05D008184 1.6e-165 587.0 424 70.0
CDE07G0400 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 3.9e-164 582.4 405 73.3
SMO353G0185 Selaginella moellendorffii HOM05D006660 ORTHO05D008184 3.5e-157 559.3 550 53.6
GSVIVG01030415001 Vitis vinifera HOM05D006660 ORTHO05D008184 1.1e-139 501.1 311 80.7
Lj8A132T54 Lonicera japonica HOM05D006660 ORTHO05D008184 3.3e-139 499.6 305 80.7
AagrBONN_evm.TU.Sc2ySwM_344.2917 Anthoceros agrestis HOM05D006660 ORTHO05D008184 3.4e-128 463.0 556 47.5
Hund08409 Selenicereus undatus HOM05D006660 ORTHO05D008184 7.9e-125 451.8 313 69.6
CBR_g47999 Chara braunii HOM05D006660 ORTHO05D008184 2.1e-117 427.2 657 38.8
Lj8C132T7 Lonicera japonica HOM05D006660 ORTHO05D008184 4.4e-107 392.9 239 83.3
GSVIVG01030416001 Vitis vinifera HOM05D006660 ORTHO05D008184 2.2e-90 337.4 197 84.8
CDE04G2012 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.4e-81 308.1 567 37.2
Oeu040483.1 Olea europaea HOM05D006660 ORTHO05D008184 4.4e-75 286.6 164 86.6
AagrBONN_evm.TU.Sc2ySwM_228.2541 Anthoceros agrestis HOM05D006660 ORTHO05D008184 3.2e-65 253.8 419 37.5
CDE07G1994 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.2e-61 241.9 141 79.4
ATR0712G102 Amborella trichopoda HOM05D006660 ORTHO05D008184 9.8e-59 232.3 154 72.7
Phvul.004G085870 Phaseolus vulgaris HOM05D006660 ORTHO05D008184 3.5e-56 223.8 129 82.9
VMungo1309G0792 Vigna mungo HOM05D006660 ORTHO05D008184 1.2e-53 215.3 126 81.0
Lalb_Chr24g0402711 Lupinus albus HOM05D006660 ORTHO05D008184 8.4e-50 202.6 104 92.3
Atru.chr6.3319 Acer truncatum HOM05D006660 ORTHO05D008184 3.9e-47 193.7 160 65.0
Cpa.g.sc987.1 Carica papaya HOM05D006660 ORTHO05D008184 6.2e-45 186.4 111 82.9
vmacro09380 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 4.9e-34 150.2 168 51.8
HanXRQChr08g0218831 Helianthus annuus HOM05D006660 ORTHO05D008184 2.1e-24 118.2 68 79.4
CDE04G2605 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.6e-16 92.0 63 68.3
Cfa027280 Carpinus fangiana HOM05D006660 ORTHO05D008184 3.7e-13 80.9 449 24.9
Oeu028070.1 Olea europaea HOM05D002203 ORTHO05D002647 2.5e-06 58.2 161 29.2
Hund12162 Selenicereus undatus HOM05D002203 ORTHO05D002647 3.3e-06 57.8 266 22.6
Medtr1g104870 Medicago truncatula HOM05D002203 ORTHO05D002647 4.3e-06 57.4 277 25.3
Lsat_1_v5_gn_9_3640 Lactuca sativa HOM05D002203 ORTHO05D002647 9.7e-06 56.2 188 22.3


User provided reference genes

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