Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G058800 Manihot esculenta HOM05D007415 ORTHO05D009324 4.4e-152 541.2 260 100.0
Thecc.01G204000 Theobroma cacao HOM05D007415 ORTHO05D009324 3.8e-103 378.6 260 71.2
Potri.014G197700 Populus trichocarpa HOM05D007415 ORTHO05D009324 1.1e-102 377.1 263 70.7
Dinv02951 Davidia involucrata HOM05D007415 ORTHO05D009324 3.0e-100 369.0 252 71.4
Ciclev10016323m.g Citrus clementina HOM05D007415 ORTHO05D009324 2.5e-99 365.9 251 70.9
Cfa006296 Carpinus fangiana HOM05D007415 ORTHO05D009324 3.3e-99 365.5 255 69.4
CiPaw.07G119000 Carya illinoinensis HOM05D007415 ORTHO05D009324 1.6e-98 363.2 270 67.8
Gohir.D07G201100 Gossypium hirsutum HOM05D007415 ORTHO05D009324 2.1e-98 362.8 260 66.9
Gorai.001G225800 Gossypium raimondii HOM05D007415 ORTHO05D009324 2.1e-98 362.8 260 66.9
Atru.chr6.3473 Acer truncatum HOM05D007415 ORTHO05D009324 1.2e-96 357.1 264 70.1
CSS0038002 Camellia sinensis var. sinensis HOM05D007415 ORTHO05D009324 1.7e-95 353.2 251 69.3
COL.COLO4_19724 Corchorus olitorius HOM05D007415 ORTHO05D009324 2.4e-94 349.4 260 65.0
Oeu058216.1 Olea europaea HOM05D007415 ORTHO05D009324 4.6e-93 345.1 253 66.0
Actinidia23816 Actinidia chinensis HOM05D007415 ORTHO05D009324 1.1e-89 334.0 256 64.8
MD11G1318200 Malus domestica HOM05D007415 ORTHO05D009324 5.3e-89 331.6 265 64.2
Prupe.8G267300 Prunus persica HOM05D007415 ORTHO05D009324 1.5e-88 330.1 263 64.3
vmacro14670 Vaccinium macrocarpon HOM05D007415 ORTHO05D009324 4.9e-87 325.1 255 64.3
Eucgr.K02344 Eucalyptus grandis HOM05D007415 ORTHO05D009324 8.4e-87 324.3 248 63.3
PGR044G2664 Punica granatum HOM05D007415 ORTHO05D009324 1.1e-86 323.9 262 61.1
QL03p044140 Quercus lobata HOM05D007415 ORTHO05D009324 2.4e-86 322.8 383 47.3
Lsat_1_v5_gn_9_15740 Lactuca sativa HOM05D007415 ORTHO05D009324 3.2e-86 322.4 250 62.4
TAR636G2599 Trochodendron aralioides HOM05D007415 ORTHO05D009324 4.2e-86 322.0 249 61.8
MD03G1298900 Malus domestica HOM05D007415 ORTHO05D009324 1.2e-85 320.5 252 64.7
CANSAT11G1932 Cannabis sativa HOM05D007415 ORTHO05D009324 1.6e-85 320.1 251 62.9
Migut.D00758 Erythranthe guttata HOM05D007415 ORTHO05D009324 2.1e-85 319.7 247 61.1
Sopen09g012680 Solanum pennellii HOM05D007415 ORTHO05D009324 2.7e-85 319.3 247 63.2
CSS0018954 Camellia sinensis var. sinensis HOM05D007415 ORTHO05D009324 4.6e-85 318.5 230 69.1
Rhsim01G0246200 Rhododendron simsii HOM05D007415 ORTHO05D009324 5.1e-84 315.1 251 64.1
Solyc09g018950.3 Solanum lycopersicum HOM05D007415 ORTHO05D009324 9.6e-83 310.8 247 61.9
MSTRG.21289 Avicennia marina HOM05D007415 ORTHO05D009324 4.8e-82 308.5 256 61.3
MELO3C002194.2 Cucumis melo HOM05D007415 ORTHO05D009324 8.2e-82 307.8 265 57.7
ClCG01G014510 Citrullus lanatus HOM05D007415 ORTHO05D009324 1.8e-81 306.6 283 56.9
CsaV3_1G007790 Cucumis sativus L. HOM05D007415 ORTHO05D009324 1.8e-81 306.6 271 57.2
HanXRQChr08g0230811 Helianthus annuus HOM05D007415 ORTHO05D009324 2.4e-81 306.2 252 59.9
Nitab4.5_0011643g0030 Nicotiana tabacum HOM05D007415 ORTHO05D009324 3.1e-81 305.8 250 61.2
Cc01_g15740 Coffea canephora HOM05D007415 ORTHO05D009324 4.0e-81 305.4 253 60.1
Nn4g24568 Nelumbo nucifera HOM05D007415 ORTHO05D009324 7.6e-80 301.2 251 59.0
Lj1g0001063 Lotus japonicus HOM05D007415 ORTHO05D009324 1.1e-78 297.4 268 57.8
Sc05g0001580 Simmondsia chinensis HOM05D007415 ORTHO05D009324 1.9e-78 296.6 259 57.5
CAN.G15.19 Capsicum annuum HOM05D007415 ORTHO05D009324 2.5e-78 296.2 247 59.9
TWI36G0361 Tripterygium wilfordii HOM05D007415 ORTHO05D009324 9.3e-78 294.3 253 59.3
Gohir.A07G194700 Gossypium hirsutum HOM05D007415 ORTHO05D009324 2.1e-77 293.1 209 67.5
arahy.Tifrunner.gnm1.ann1.YL0UD8 Arachis hypogaea HOM05D007415 ORTHO05D009324 1.8e-76 290.0 272 55.5
Cpa.g.sc8.12 Carica papaya HOM05D007415 ORTHO05D009324 1.8e-76 290.0 211 65.9
arahy.Tifrunner.gnm1.ann1.HL0ERI Arachis hypogaea HOM05D007415 ORTHO05D009324 2.3e-76 289.7 272 55.5
Sabra14G0132700 Salix brachista HOM05D007415 ORTHO05D009324 5.1e-76 288.5 330 51.2
Sed0017664 Sechium edule HOM05D007415 ORTHO05D009324 1.9e-75 286.6 267 55.4
THA.LOC104808823 Tarenaya hassleriana HOM05D007415 ORTHO05D009324 2.5e-75 286.2 255 59.2
Duzib133G1418 Durio zibethinus HOM05D007415 ORTHO05D009324 9.7e-75 284.3 260 58.1
Aa31sc565G30 Aethionema arabicum HOM05D007415 ORTHO05D009324 3.7e-74 282.3 249 55.0
Sp7g09150 Schrenkiella parvula HOM05D007415 ORTHO05D009324 1.4e-73 280.4 253 56.9
Carub.0007s3006 Capsella rubella HOM05D007415 ORTHO05D009324 1.8e-73 280.0 261 54.8
Psat5g001880 Pisum sativum HOM05D007415 ORTHO05D009324 2.4e-73 279.6 262 54.2
SHI10204 Sapria himalayana HOM05D007415 ORTHO05D009324 6.9e-73 278.1 266 53.4
Peaxi162Scf00424g00066 Petunia axillaris HOM05D007415 ORTHO05D009324 9.0e-73 277.7 216 63.4
CARHR218100 Cardamine hirsuta HOM05D007415 ORTHO05D009324 4.5e-72 275.4 261 55.2
SalBow6G5534 Salvia bowleyana HOM05D007415 ORTHO05D009324 4.5e-72 275.4 318 48.1
Thhalv10026014m.g Eutrema salsugineum HOM05D007415 ORTHO05D009324 7.6e-72 274.6 259 54.4
Glyma.04G002800 Glycine max HOM05D007415 ORTHO05D009324 1.7e-71 273.5 252 55.2
AL9U11890 Arabidopsis lyrata HOM05D007415 ORTHO05D009324 5.0e-71 271.9 262 54.2
Medtr3g118090 Medicago truncatula HOM05D007415 ORTHO05D009324 8.5e-71 271.2 258 54.7
Nitab4.5_0010771g0010 Nicotiana tabacum HOM05D007415 ORTHO05D009324 1.4e-70 270.4 250 57.2
PSO675G4429 Papaver somniferum HOM05D007415 ORTHO05D009324 4.2e-70 268.9 243 54.3
BcaB04g17744 Brassica carinata HOM05D007415 ORTHO05D009324 7.2e-70 268.1 253 53.4
AT4G12760 Arabidopsis thaliana HOM05D007415 ORTHO05D009324 1.6e-69 266.9 261 53.3
BcaC07g37433 Brassica carinata HOM05D007415 ORTHO05D009324 1.8e-68 263.5 253 52.6
C08p09070 Brassica napus HOM05D007415 ORTHO05D009324 1.8e-68 263.5 253 52.6
BolC8t47754H Brassica oleracea HOM05D007415 ORTHO05D009324 1.8e-68 263.5 253 52.6
unitig_61.g26009 Utricularia gibba HOM05D007415 ORTHO05D009324 1.5e-67 260.4 249 53.8
VMungo1309G2266 Vigna mungo HOM05D007415 ORTHO05D009324 1.5e-67 260.4 249 55.0
BraA08t32753Z Brassica rapa HOM05D007415 ORTHO05D009324 5.7e-67 258.5 253 52.2
GSVIVG01038257001 Vitis vinifera HOM05D007415 ORTHO05D009324 2.8e-66 256.1 235 52.3
Aqoxy4G00006 Aquilegia oxysepala HOM05D007415 ORTHO05D009324 3.4e-64 249.2 243 51.0
A08p07370 Brassica napus HOM05D007415 ORTHO05D009324 3.4e-64 249.2 278 47.5
ECA247G1801 Erigeron canadensis HOM05D007415 ORTHO05D009324 2.2e-63 246.5 249 53.0
DCAR_012712 Daucus carota HOM05D006570 ORTHO05D008193 5.0e-63 245.4 247 52.2
EL10Ac5g10567 Beta vulgaris HOM05D007415 ORTHO05D009324 1.4e-62 243.8 200 62.0
Duzib138G0016 Durio zibethinus HOM05D007415 ORTHO05D009324 2.7e-61 239.6 260 50.0
Lj1C108T7 Lonicera japonica HOM05D007415 ORTHO05D009324 6.1e-61 238.4 180 66.7
Hund02818 Selenicereus undatus HOM05D007415 ORTHO05D009324 1.4e-60 237.3 198 61.1
MBI10_g35389_MAGBIO Magnolia biondii HOM05D007415 ORTHO05D009324 5.1e-60 235.3 238 52.9
Lalb_Chr11g0061191 Lupinus albus HOM05D007415 ORTHO05D009324 6.3e-58 228.4 175 61.1
Os05g0417300 Oryza sativa ssp. japonica HOM05D007415 ORTHO05D009324 1.8e-57 226.9 257 45.5
CDE04G2941 Ceratophyllum demersum HOM05D007415 ORTHO05D009324 2.6e-56 223.0 234 51.3
AUR62008047 Chenopodium quinoa HOM05D007415 ORTHO05D009324 1.7e-55 220.3 249 50.2
AUR62028622 Chenopodium quinoa HOM05D007415 ORTHO05D009324 2.9e-55 219.5 249 49.0
Glyma.06G002800 Glycine max HOM05D007415 ORTHO05D009324 4.2e-54 215.7 199 56.8
PSO732G0601 Papaver somniferum HOM05D007415 ORTHO05D009324 1.3e-50 204.1 246 46.3
Phvul.009G118400 Phaseolus vulgaris HOM05D007415 ORTHO05D009324 5.9e-48 195.3 254 46.5
PGSC0003DMG400020290 Solanum tuberosum HOM05D007415 ORTHO05D009324 1.5e-46 190.7 141 65.2
Haze_04514 Corylus avellana HOM05D007415 ORTHO05D009324 2.4e-41 173.3 146 61.6
ATR0743G053 Amborella trichopoda HOM05D007415 ORTHO05D009324 2.9e-39 166.4 234 40.2
Ca_15292_v3 Cicer arietinum L. HOM05D007415 ORTHO05D009324 3.2e-38 162.9 161 51.6
TPR.G38565 Trifolium pratense HOM05D007415 ORTHO05D009324 3.5e-32 142.9 252 38.1
Mapoly0134s0003 Marchantia polymorpha HOM05D007415 ORTHO05D009324 5.5e-30 135.6 246 37.4
Ah.11g050670 Amaranthus hybridus HOM05D007415 ORTHO05D009324 2.3e-28 130.2 216 40.7
HPP92_001921 Vanilla planifolia HOM05D007415 ORTHO05D009324 5.2e-28 129.0 176 43.8
Pp3c1_28310 Physcomitrium patens HOM05D007415 ORTHO05D009324 1.4e-25 120.9 259 31.3
SalBow2G2324 Salvia bowleyana HOM05D007415 ORTHO05D009324 3.6e-21 106.3 266 30.1
DCAR_017283 Daucus carota HOM05D007415 ORTHO05D009324 1.2e-19 101.3 135 43.7
AagrBONN_evm.TU.Sc2ySwM_362.2902 Anthoceros agrestis HOM05D007415 ORTHO05D009324 1.5e-19 100.9 168 37.5
PGSC0003DMG400007530 Solanum tuberosum HOM05D007415 ORTHO05D009324 1.6e-16 90.9 83 53.0
Zm00001eb288240 Zea mays HOM05D007415 ORTHO05D009324 7.8e-16 88.6 135 39.3
SMO356G0522 Selaginella moellendorffii HOM05D007415 ORTHO05D009324 3.9e-15 86.3 245 29.0
TPR.G6328 Trifolium pratense HOM05D000001 ORTHO05D009753 2.3e-07 60.5 40 70.0


User provided reference genes

Program Settings