Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 1.1e-119 433.7 285 100.0
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 1.1e-119 433.7 285 100.0
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 6.3e-112 407.9 285 96.1
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 1.2e-99 367.1 282 81.9
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 6.6e-85 318.2 288 69.8
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 3.3e-84 315.8 295 69.5
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 9.5e-84 314.3 286 69.6
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 1.6e-83 313.5 282 72.3
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 3.6e-83 312.4 295 74.9
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.1e-82 310.8 300 70.7
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 5.2e-82 308.5 300 67.7
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 8.9e-82 307.8 293 70.3
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 1.2e-81 307.4 291 67.0
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 2.0e-81 306.6 292 65.8
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 2.0e-81 306.6 303 72.9
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 2.6e-81 306.2 291 67.0
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 3.4e-81 305.8 285 67.7
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 3.8e-80 302.4 290 70.7
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 6.4e-80 301.6 296 72.6
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 1.1e-79 300.8 292 70.5
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 2.4e-79 299.7 289 69.9
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.2e-78 297.4 284 67.6
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.2e-78 297.4 284 67.6
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 2.1e-78 296.6 276 67.4
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 2.7e-78 296.2 285 71.9
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 7.8e-78 294.7 281 70.8
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 7.8e-78 294.7 292 71.2
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 2.3e-77 293.1 289 72.7
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 5.1e-77 292.0 283 69.6
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 6.6e-77 291.6 301 63.8
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 8.7e-77 291.2 296 63.5
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 8.7e-77 291.2 297 63.0
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 1.1e-76 290.8 296 68.6
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 2.5e-76 289.7 295 62.4
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 3.3e-76 289.3 298 69.1
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 5.6e-76 288.5 294 69.7
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 3.6e-75 285.8 279 65.2
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 4.7e-75 285.4 291 67.7
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 6.2e-75 285.0 285 70.5
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 8.1e-75 284.6 289 71.6
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 1.4e-74 283.9 312 67.3
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 3.1e-74 282.7 289 74.4
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 3.1e-74 282.7 274 69.3
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 5.3e-74 282.0 298 71.1
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 5.3e-74 282.0 279 64.5
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 6.9e-74 281.6 289 72.3
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 9.0e-74 281.2 305 60.3
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 2.6e-73 279.6 294 72.1
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 2.6e-73 279.6 284 65.1
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 2.6e-73 279.6 310 71.3
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 2.6e-73 279.6 293 70.6
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 4.4e-73 278.9 292 66.8
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 5.8e-73 278.5 294 70.7
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 7.6e-73 278.1 291 70.1
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 9.9e-73 277.7 308 71.1
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 1.3e-72 277.3 287 76.0
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.3e-72 277.3 298 66.8
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 1.7e-72 276.9 294 71.8
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 6.4e-72 275.0 306 61.8
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 8.4e-72 274.6 298 64.1
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 1.1e-71 274.2 285 68.1
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 1.9e-71 273.5 304 69.1
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 2.4e-71 273.1 287 69.7
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 3.2e-71 272.7 305 54.4
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 4.2e-71 272.3 303 66.7
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 5.4e-71 271.9 299 68.9
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 5.4e-71 271.9 303 63.0
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 7.1e-71 271.6 294 62.6
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 7.1e-71 271.6 316 65.5
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 9.3e-71 271.2 316 65.8
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.1e-70 270.0 313 64.9
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 6.0e-70 268.5 313 64.9
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 7.8e-70 268.1 301 60.8
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 1.3e-69 267.3 290 62.1
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 3.0e-69 266.2 299 68.6
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 3.9e-69 265.8 297 54.5
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 5.1e-69 265.4 287 68.3
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 8.7e-69 264.6 299 60.9
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 1.1e-68 264.2 299 67.6
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 3.3e-68 262.7 301 68.4
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 9.6e-68 261.2 301 60.5
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 9.6e-68 261.2 287 62.0
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 1.3e-67 260.8 288 65.3
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 1.3e-67 260.8 304 63.5
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 6.2e-67 258.5 273 56.4
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 6.2e-67 258.5 289 66.8
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 6.2e-67 258.5 300 58.7
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 8.1e-67 258.1 288 58.0
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 1.1e-66 257.7 305 60.0
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 1.4e-66 257.3 287 67.2
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 1.8e-66 256.9 291 70.4
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 1.8e-66 256.9 288 59.7
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 1.8e-66 256.9 288 59.7
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 3.1e-66 256.1 304 61.2
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 5.3e-66 255.4 290 66.6
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 5.3e-66 255.4 291 67.4
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 6.9e-66 255.0 309 63.4
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 2.0e-65 253.4 307 64.8
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 2.6e-65 253.1 283 61.5
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 2.6e-65 253.1 280 61.1
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 4.5e-65 252.3 280 68.6
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 9.9e-65 251.1 291 60.1
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 1.7e-64 250.4 320 58.4
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 2.2e-64 250.0 294 67.0
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 2.9e-64 249.6 312 56.4
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 2.9e-64 249.6 311 63.7
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 3.8e-64 249.2 310 58.7
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 3.8e-64 249.2 297 62.3
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 6.4e-64 248.4 288 69.4
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 1.4e-63 247.3 311 55.0
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 1.9e-63 246.9 286 57.0
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 1.9e-63 246.9 284 62.0
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 2.4e-63 246.5 285 64.2
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 3.2e-63 246.1 306 67.3
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 1.6e-62 243.8 302 61.6
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 2.1e-62 243.4 302 65.6
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 2.7e-62 243.0 285 56.1
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 3.5e-62 242.7 285 61.4
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 3.5e-62 242.7 299 64.2
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 3.9e-61 239.2 314 58.0
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 9.6e-60 234.6 335 58.8
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 9.6e-60 234.6 277 66.1
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 1.8e-58 230.3 288 58.3
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 2.6e-57 226.5 298 55.4
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 4.5e-57 225.7 285 56.8
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 5.8e-57 225.3 310 61.9
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 7.6e-57 224.9 398 49.7
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 1.1e-55 221.1 280 58.6
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 3.2e-55 219.5 285 54.0
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 4.2e-55 219.2 295 54.9
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 4.6e-54 215.7 281 57.3
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 1.1e-52 211.1 285 60.0
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 1.9e-52 210.3 284 59.9
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 5.6e-52 208.8 101 100.0
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 5.6e-52 208.8 284 54.6
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 9.6e-52 208.0 290 52.1
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 9.6e-52 208.0 256 57.8
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 2.8e-51 206.5 176 73.3
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 3.1e-50 203.0 123 77.2
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 5.3e-50 202.2 221 62.9
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 6.9e-50 201.8 122 78.7
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 5.8e-49 198.7 130 71.5
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.3e-48 197.6 305 51.5
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 7.1e-47 191.8 307 52.4
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 7.9e-46 188.3 292 50.7
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 1.3e-45 187.6 124 74.2
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 6.7e-45 185.3 293 51.5
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 8.2e-43 178.3 269 50.9
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 1.3e-40 171.0 131 64.1
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 2.2e-40 170.2 128 65.6
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 6.5e-40 168.7 232 64.7
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 5.0e-32 142.5 305 45.6
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 3.2e-31 139.8 314 46.5
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 4.2e-31 139.4 99 66.7
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 1.6e-30 137.5 190 53.2
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 3.6e-30 136.3 310 50.0
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 1.5e-28 131.0 323 48.9
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 2.8e-27 126.7 331 46.5
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 2.4e-26 123.6 118 65.3
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 3.1e-26 123.2 83 73.5
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.5e-25 120.9 119 55.5
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 2.9e-24 116.7 82 74.4
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 3.9e-21 106.3 109 53.2
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 5.2e-21 105.9 194 65.5
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 9.7e-20 101.7 129 44.2
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 4.1e-18 96.3 81 60.5
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 9.1e-18 95.1 80 66.2
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.3e-16 91.3 94 58.5
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 2.9e-16 90.1 58 70.7
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.5e-15 87.8 85 60.0
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.5e-15 87.0 77 61.0
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 5.5e-15 85.9 82 63.4
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 2.7e-14 83.6 62 61.3
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 3.6e-14 83.2 71 64.8
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 4.7e-14 82.8 72 66.7
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 4.8e-11 72.8 54 63.0
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.0e-09 67.4 46 80.4
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 2.7e-09 67.0 83 51.8
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 7.7e-09 65.5 83 50.6
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 3.8e-08 63.2 75 50.7
Duzib170G0932 Durio zibethinus HOM05D003822 ORTHO05D004484 8.0e-06 55.5 31 83.9


User provided reference genes

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