Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G055803 Manihot esculenta HOM05D005992 ORTHO05D007476 5.7e-92 340.9 170 100.0
Manes.13G058400 Manihot esculenta HOM05D005992 ORTHO05D007476 4.8e-67 258.1 175 74.9
Cpa.g.sc8.7 Carica papaya HOM05D005992 ORTHO05D007476 2.4e-50 202.6 176 64.8
Potri.014G172600 Populus trichocarpa HOM05D005992 ORTHO05D007476 2.3e-48 196.1 182 62.1
GSVIVG01004128001 Vitis vinifera HOM05D005992 ORTHO05D007476 2.3e-45 186.0 161 62.1
Thecc.01G203400 Theobroma cacao HOM05D005992 ORTHO05D007476 5.2e-45 184.9 177 60.5
FAN08G0048 Fragaria x ananassa HOM05D005992 ORTHO05D007476 1.3e-43 180.3 174 58.0
CiPaw.13G059000 Carya illinoinensis HOM05D005992 ORTHO05D007476 1.7e-43 179.9 172 60.5
Dinv28773 Davidia involucrata HOM05D005992 ORTHO05D007476 2.9e-43 179.1 168 56.5
FAN13G0560 Fragaria x ananassa HOM05D005992 ORTHO05D007476 8.3e-43 177.6 166 60.2
FAN18G0660 Fragaria x ananassa HOM05D005992 ORTHO05D007476 1.4e-42 176.8 170 58.8
FvH4_5g18680 Fragaria vesca HOM05D005992 ORTHO05D007476 1.9e-42 176.4 166 59.6
FAN04G1498 Fragaria x ananassa HOM05D005992 ORTHO05D007476 3.2e-42 175.6 166 59.0
COL.COLO4_19718 Corchorus olitorius HOM05D005992 ORTHO05D007476 5.4e-42 174.9 177 57.6
Nn7g37421 Nelumbo nucifera HOM05D005992 ORTHO05D007476 1.2e-41 173.7 166 57.2
RcHm_v2.0_Chr7g0176831 Rosa chinensis HOM05D005992 ORTHO05D007476 1.2e-41 173.7 171 57.3
CSS0023701 Camellia sinensis var. sinensis HOM05D005992 ORTHO05D007476 4.6e-41 171.8 175 54.3
CSS0036227 Camellia sinensis var. sinensis HOM05D005992 ORTHO05D007476 4.6e-41 171.8 175 54.3
Gohir.A11G146200 Gossypium hirsutum HOM05D005992 ORTHO05D007476 7.8e-41 171.0 173 56.1
QL09p044779 Quercus lobata HOM05D005992 ORTHO05D007476 1.0e-40 170.6 171 56.7
Duzib138G0279 Durio zibethinus HOM05D005992 ORTHO05D007476 1.3e-40 170.2 172 56.4
Gorai.007G163000 Gossypium raimondii HOM05D005992 ORTHO05D007476 1.3e-40 170.2 173 56.1
Gohir.D11G152400 Gossypium hirsutum HOM05D005992 ORTHO05D007476 2.3e-40 169.5 173 56.1
CANSAT11G0965 Cannabis sativa HOM05D005992 ORTHO05D007476 1.5e-39 166.8 174 53.4
Prupe.8G267200 Prunus persica HOM05D005992 ORTHO05D007476 2.5e-39 166.0 166 55.4
Duzib133G0028 Durio zibethinus HOM05D005992 ORTHO05D007476 1.2e-38 163.7 174 54.6
Hma1.2p1_0834F.1_g225730 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 2.1e-38 162.9 169 51.5
TWI36G1335 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 3.6e-38 162.2 169 52.7
TWI36G0694 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 8.1e-38 161.0 172 52.9
AUR62017763 Chenopodium quinoa HOM05D005992 ORTHO05D007476 1.4e-37 160.2 173 52.0
MD03G1298800 Malus domestica HOM05D005992 ORTHO05D007476 2.3e-37 159.5 172 54.7
Sabra14G0132200 Salix brachista HOM05D005992 ORTHO05D007476 2.3e-37 159.5 224 48.7
Lsat_1_v5_gn_9_15721 Lactuca sativa HOM05D005992 ORTHO05D007476 3.1e-37 159.1 174 52.3
Hma1.2p1_0161F.1_g071860 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 6.8e-37 157.9 172 50.6
TWI75G1816 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 6.8e-37 157.9 172 52.3
HanXRQChr08g0230801 Helianthus annuus HOM05D005992 ORTHO05D007476 3.4e-36 155.6 170 54.7
Atru.chr6.3466 Acer truncatum HOM05D005992 ORTHO05D007476 2.9e-35 152.5 176 52.8
PGR044G1143 Punica granatum HOM05D005992 ORTHO05D007476 4.9e-35 151.8 165 52.1
Cc01_g15730 Coffea canephora HOM05D005992 ORTHO05D007476 1.1e-34 150.6 169 53.3
Sc10g0006540 Simmondsia chinensis HOM05D005992 ORTHO05D007476 1.6e-33 146.7 161 52.8
Psat5g001840 Pisum sativum HOM05D005992 ORTHO05D007476 2.1e-33 146.4 173 54.3
Ah.04g163410 Amaranthus hybridus HOM05D005992 ORTHO05D007476 2.7e-33 146.0 167 50.9
Lj1g0017920 Lotus japonicus HOM05D005992 ORTHO05D007476 2.7e-33 146.0 173 53.2
arahy.Tifrunner.gnm1.ann1.DJH8FA Arachis hypogaea HOM05D005992 ORTHO05D007476 6.0e-33 144.8 180 48.3
Medtr3g118100 Medicago truncatula HOM05D005992 ORTHO05D007476 1.3e-32 143.7 175 50.9
Migut.D00757 Erythranthe guttata HOM05D005992 ORTHO05D007476 5.1e-32 141.7 172 50.0
CDE07G1966 Ceratophyllum demersum HOM05D005992 ORTHO05D007476 8.6e-32 141.0 148 54.1
EL10Ac9g23025 Beta vulgaris HOM05D005992 ORTHO05D007476 1.1e-31 140.6 140 52.1
ECA247G1400 Erigeron canadensis HOM05D005992 ORTHO05D007476 1.1e-31 140.6 162 52.5
VMungo1309G0397 Vigna mungo HOM05D005992 ORTHO05D007476 1.5e-31 140.2 171 54.4
Eucgr.K02345 Eucalyptus grandis HOM05D005992 ORTHO05D007476 5.6e-31 138.3 173 50.9
Phvul.009G118300 Phaseolus vulgaris HOM05D005992 ORTHO05D007476 9.5e-31 137.5 169 52.7
CDE04G1688 Ceratophyllum demersum HOM05D005992 ORTHO05D007476 2.1e-30 136.3 156 50.0
Ciclev10016954m.g Citrus clementina HOM05D005992 ORTHO05D007476 2.8e-30 136.0 177 50.8
Lj1C108T9 Lonicera japonica HOM05D005992 ORTHO05D007476 6.2e-30 134.8 112 58.9
Glyma.04G002700 Glycine max HOM05D005992 ORTHO05D007476 8.1e-30 134.4 170 52.9
HPP92_004514 Vanilla planifolia HOM05D005992 ORTHO05D007476 8.1e-30 134.4 167 48.5
MBI07_g44661_MAGBIO Magnolia biondii HOM05D005992 ORTHO05D007476 1.1e-29 134.0 143 52.4
Glyma.06G002700 Glycine max HOM05D005992 ORTHO05D007476 1.4e-29 133.7 169 52.7
Ca_15291_v3 Cicer arietinum L. HOM05D005992 ORTHO05D007476 1.8e-29 133.3 187 47.6
SalBow6G0883 Salvia bowleyana HOM05D005992 ORTHO05D007476 1.8e-29 133.3 185 47.6
CAN.G874.50 Capsicum annuum HOM05D005992 ORTHO05D007476 5.2e-29 131.7 171 49.1
Oeu058218.1 Olea europaea HOM05D005992 ORTHO05D007476 6.8e-29 131.3 171 46.2
PGSC0003DMG400027679 Solanum tuberosum HOM05D005992 ORTHO05D007476 1.5e-28 130.2 172 48.8
AUR62032915 Chenopodium quinoa HOM05D005992 ORTHO05D007476 2.6e-28 129.4 138 48.6
Solyc06g082830.3 Solanum lycopersicum HOM05D005992 ORTHO05D007476 2.6e-28 129.4 173 48.6
Sopen06g034190 Solanum pennellii HOM05D005992 ORTHO05D007476 2.6e-28 129.4 174 48.3
SGA_v2.0_scaffold8G04484 Striga asiatica HOM05D005992 ORTHO05D007476 2.6e-28 129.4 171 49.1
PSO357G0365 Papaver somniferum HOM05D005992 ORTHO05D007476 1.3e-27 127.1 166 50.0
Peaxi162Scf00390g00125 Petunia axillaris HOM05D005992 ORTHO05D007476 1.7e-27 126.7 171 49.7
TWI18G0378 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 1.7e-27 126.7 139 51.1
arahy.Tifrunner.gnm1.ann1.B4TR6Y Arachis hypogaea HOM05D005992 ORTHO05D007476 2.2e-27 126.3 173 45.7
PSO170G4201 Papaver somniferum HOM05D005992 ORTHO05D007476 2.2e-27 126.3 166 49.4
DCAR_018600 Daucus carota HOM05D005992 ORTHO05D007476 3.8e-27 125.6 205 42.4
Nitab4.5_0009028g0010 Nicotiana tabacum HOM05D005992 ORTHO05D007476 3.8e-27 125.6 177 48.6
vmacro14669 Vaccinium macrocarpon HOM05D005992 ORTHO05D007476 3.8e-27 125.6 223 36.8
Nitab4.5_0001348g0200 Nicotiana tabacum HOM05D005992 ORTHO05D007476 1.1e-26 124.0 174 48.9
THA.LOC104819021 Tarenaya hassleriana HOM05D005992 ORTHO05D007476 1.1e-26 124.0 152 46.7
Nitab4.5_0008751g0010 Nicotiana tabacum HOM05D005992 ORTHO05D007476 1.4e-26 123.6 174 48.9
SalBow2G0316 Salvia bowleyana HOM05D005992 ORTHO05D007476 2.4e-26 122.9 215 40.9
Zm00001eb246760 Zea mays HOM05D005992 ORTHO05D007476 2.4e-26 122.9 136 50.7
THA.LOC104822452 Tarenaya hassleriana HOM05D005992 ORTHO05D007476 3.2e-26 122.5 161 46.0
Lalb_Chr11g0061201 Lupinus albus HOM05D005992 ORTHO05D007476 5.4e-26 121.7 146 53.4
Rhsim01G0246100 Rhododendron simsii HOM05D005992 ORTHO05D007476 1.2e-25 120.6 129 49.6
Os02g0609400 Oryza sativa ssp. japonica HOM05D005992 ORTHO05D007476 1.6e-25 120.2 147 49.0
CiPaw.14G047400 Carya illinoinensis HOM05D005992 ORTHO05D007476 6.0e-25 118.2 130 55.4
Nitab4.5_0005967g0050 Nicotiana tabacum HOM05D005992 ORTHO05D007476 7.8e-25 117.9 176 45.5
MSTRG.18519 Avicennia marina HOM05D005992 ORTHO05D007476 1.9e-23 113.2 142 50.7
TAR362G0776 Trochodendron aralioides HOM05D005992 ORTHO05D007476 2.5e-23 112.8 102 59.8
TPR.G38510 Trifolium pratense HOM05D005992 ORTHO05D007476 1.2e-22 110.5 138 50.7
Aqoxy2G04184 Aquilegia oxysepala HOM05D001906 ORTHO05D002083 2.8e-22 109.4 151 43.7
ATR0743G072 Amborella trichopoda HOM05D005992 ORTHO05D007476 6.2e-22 108.2 144 43.8
CARHR183920 Cardamine hirsuta HOM05D005992 ORTHO05D007476 7.6e-20 101.3 171 39.8
Os02g0599500 Oryza sativa ssp. japonica HOM05D005992 ORTHO05D007476 9.9e-20 100.9 126 46.0
unitig_60.g25570 Utricularia gibba HOM05D005992 ORTHO05D007476 1.7e-19 100.1 159 44.7
AL8G21060 Arabidopsis lyrata HOM05D005992 ORTHO05D007476 8.4e-19 97.8 138 44.2
AT5G48335 Arabidopsis thaliana HOM05D005992 ORTHO05D007476 4.2e-18 95.5 138 42.0
BraA05t22792Z Brassica rapa HOM05D005992 ORTHO05D007476 9.3e-18 94.4 165 41.2
Hma1.2p1_1756F.1_g301045 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 1.6e-17 93.6 105 49.5
Thhalv10021713m.g Eutrema salsugineum HOM05D005992 ORTHO05D007476 3.9e-16 89.0 155 38.7
Sp3g06520 Schrenkiella parvula HOM05D005992 ORTHO05D007476 8.7e-16 87.8 163 38.0
Carub.0008s0791 Capsella rubella HOM05D005992 ORTHO05D007476 3.3e-15 85.9 137 43.1
Oeu064700.1 Olea europaea HOM05D005992 ORTHO05D007476 2.1e-14 83.2 103 44.7
A05p40610 Brassica napus HOM05D005992 ORTHO05D007476 8.1e-14 81.3 165 37.0
C05p59720 Brassica napus HOM05D005992 ORTHO05D007476 3.1e-13 79.3 162 37.0
BolC5t34626H Brassica oleracea HOM05D005992 ORTHO05D007476 3.1e-13 79.3 162 37.0
Carub.0003s0715 Capsella rubella HOM05D005992 ORTHO05D007476 5.3e-13 78.6 98 45.9
AL3G18940 Arabidopsis lyrata HOM05D005992 ORTHO05D007476 1.5e-12 77.0 90 44.4
Actinidia23817 Actinidia chinensis HOM05D005992 ORTHO05D007476 1.1e-10 70.9 80 47.5
CARHR082280 Cardamine hirsuta HOM05D005992 ORTHO05D007476 3.2e-10 69.3 163 32.5
Sopen09g012660 Solanum pennellii HOM05D005992 ORTHO05D007476 2.1e-09 66.6 70 47.1
Aa31LG5G18140 Aethionema arabicum HOM05D005992 ORTHO05D007476 4.6e-09 65.5 90 42.2
BcaC05g29553 Brassica carinata HOM05D005992 ORTHO05D007476 1.0e-08 64.3 116 37.9
Aqoxy4G02934 Aquilegia oxysepala HOM05D001961 ORTHO05D002286 1.3e-08 63.9 120 33.3
Gorai.009G395900 Gossypium raimondii HOM05D005992 ORTHO05D007476 1.1e-07 60.8 56 53.6
AT3G07580 Arabidopsis thaliana HOM05D005992 ORTHO05D007476 1.5e-07 60.5 135 32.6
CDE06G0073 Ceratophyllum demersum HOM05D001961 ORTHO05D002286 1.9e-07 60.1 75 45.3
Gohir.D11G007175 Gossypium hirsutum HOM05D005992 ORTHO05D007476 4.3e-07 58.9 56 53.6
PGSC0003DMG400020300 Solanum tuberosum HOM05D005992 ORTHO05D007476 7.4e-07 58.2 105 41.0
CiPaw.10G142500 Carya illinoinensis HOM05D005992 ORTHO05D007476 1.3e-06 57.4 64 50.0
Gohir.D09G141833 Gossypium hirsutum HOM05D005992 ORTHO05D007476 1.3e-06 57.4 56 51.8
Gohir.D11G304103 Gossypium hirsutum HOM05D005992 ORTHO05D007476 1.3e-06 57.4 56 51.8
Gohir.D07G124900 Gossypium hirsutum HOM05D005992 ORTHO05D007476 1.6e-06 57.0 56 51.8


User provided reference genes

Program Settings