Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G054200 Manihot esculenta HOM05D006407 ORTHO05D008079 4.8e-230 800.8 409 100.0
Dinv28811 Davidia involucrata HOM05D006407 ORTHO05D008079 7.1e-165 584.3 407 76.7
CiPaw.14G043600 Carya illinoinensis HOM05D006407 ORTHO05D008079 7.3e-162 574.3 409 76.3
Haze_03500 Corylus avellana HOM05D006407 ORTHO05D008079 1.4e-160 570.1 380 77.9
Cfa010568 Carpinus fangiana HOM05D006407 ORTHO05D008079 2.4e-160 569.3 380 77.6
CSS0036527 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 3.1e-160 568.9 391 77.2
QL09p046404 Quercus lobata HOM05D006407 ORTHO05D008079 2.0e-159 566.2 410 73.7
Cpa.g.sc8.72 Carica papaya HOM05D006407 ORTHO05D008079 2.6e-159 565.8 412 75.5
CSS0030734 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 7.6e-159 564.3 396 76.0
TWI36G1400 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 9.9e-159 563.9 414 73.9
Thecc.01G211000 Theobroma cacao HOM05D006407 ORTHO05D008079 2.9e-158 562.4 410 76.1
Gorai.N003300 Gossypium raimondii HOM05D006407 ORTHO05D008079 3.8e-158 562.0 398 76.9
TWI18G0256 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 3.8e-158 562.0 410 73.7
AL8G21320 Arabidopsis lyrata HOM05D006407 ORTHO05D008079 1.4e-157 560.1 410 74.6
AT5G48470 Arabidopsis thaliana HOM05D006407 ORTHO05D008079 2.4e-157 559.3 410 74.1
Gohir.A07G159200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 3.2e-157 558.9 411 75.4
Aa31sc527G10 Aethionema arabicum HOM05D006407 ORTHO05D008079 5.4e-157 558.1 396 74.5
THA.LOC104802645 Tarenaya hassleriana HOM05D006407 ORTHO05D008079 5.4e-157 558.1 410 74.9
CARHR183610 Cardamine hirsuta HOM05D006407 ORTHO05D008079 1.6e-156 556.6 409 73.8
TAR636G1997 Trochodendron aralioides HOM05D006407 ORTHO05D008079 1.6e-156 556.6 409 72.4
Thhalv10004357m.g Eutrema salsugineum HOM05D006407 ORTHO05D008079 2.1e-156 556.2 408 75.5
Sc17g0001660 Simmondsia chinensis HOM05D006407 ORTHO05D008079 2.1e-156 556.2 408 73.5
C09p04840 Brassica napus HOM05D006407 ORTHO05D008079 2.7e-156 555.8 407 74.2
BcaC04g23774 Brassica carinata HOM05D006407 ORTHO05D008079 3.5e-156 555.4 381 77.2
BolC9t53411H Brassica oleracea HOM05D006407 ORTHO05D008079 3.5e-156 555.4 381 77.2
A09p04530 Brassica napus HOM05D006407 ORTHO05D008079 4.6e-156 555.1 379 77.3
BraA09t36088Z Brassica rapa HOM05D006407 ORTHO05D008079 4.6e-156 555.1 379 77.3
Carub.0008s0805 Capsella rubella HOM05D006407 ORTHO05D008079 4.6e-156 555.1 399 73.9
Ah.11g051020 Amaranthus hybridus HOM05D006407 ORTHO05D008079 2.3e-155 552.7 390 74.1
Actinidia30017 Actinidia chinensis HOM05D006407 ORTHO05D008079 3.0e-155 552.4 396 75.0
CsaV3_7G026830 Cucumis sativus L. HOM05D006407 ORTHO05D008079 3.0e-155 552.4 396 73.5
Prupe.8G190300 Prunus persica HOM05D006407 ORTHO05D008079 3.9e-155 552.0 416 72.6
Eucgr.H00725 Eucalyptus grandis HOM05D006407 ORTHO05D008079 1.1e-154 550.4 366 79.2
Potri.002G251400 Populus trichocarpa HOM05D006407 ORTHO05D008079 1.1e-154 550.4 396 74.0
BcaB04g19579 Brassica carinata HOM05D006407 ORTHO05D008079 1.5e-154 550.1 395 74.4
CANSAT01G1280 Cannabis sativa HOM05D006407 ORTHO05D008079 2.5e-154 549.3 416 71.6
RcHm_v2.0_Chr6g0282821 Rosa chinensis HOM05D006407 ORTHO05D008079 2.5e-154 549.3 407 73.7
PGR083G0415 Punica granatum HOM05D006407 ORTHO05D008079 1.3e-153 547.0 397 75.1
Ciclev10015489m.g Citrus clementina HOM05D006407 ORTHO05D008079 1.6e-153 546.6 407 72.2
GSVIVG01006226001 Vitis vinifera HOM05D006407 ORTHO05D008079 8.1e-153 544.3 335 83.3
FvH4_2g17800 Fragaria vesca HOM05D006407 ORTHO05D008079 1.4e-152 543.5 405 72.6
ClCG09G008210 Citrullus lanatus HOM05D006407 ORTHO05D008079 2.4e-152 542.7 388 73.2
FAN24G2889 Fragaria x ananassa HOM05D006407 ORTHO05D008079 4.0e-152 542.0 405 72.3
Cc01_g16130 Coffea canephora HOM05D006407 ORTHO05D008079 1.5e-151 540.0 399 71.4
Sed0008140 Sechium edule HOM05D006407 ORTHO05D008079 1.5e-151 540.0 399 71.2
Hund02795 Selenicereus undatus HOM05D006407 ORTHO05D008079 2.6e-151 539.3 391 74.4
Aqoxy2G03962 Aquilegia oxysepala HOM05D006407 ORTHO05D008079 3.4e-151 538.9 362 77.6
Sp2g18840 Schrenkiella parvula HOM05D006407 ORTHO05D008079 3.4e-151 538.9 327 85.3
Peaxi162Scf00335g00087 Petunia axillaris HOM05D006407 ORTHO05D008079 4.5e-151 538.5 352 78.7
FAN27G2095 Fragaria x ananassa HOM05D006407 ORTHO05D008079 7.6e-151 537.7 405 71.6
FAN27G3088 Fragaria x ananassa HOM05D006407 ORTHO05D008079 7.6e-151 537.7 405 71.6
FAN15G1719 Fragaria x ananassa HOM05D006407 ORTHO05D008079 9.9e-151 537.3 405 71.6
Rhsim13G0052700 Rhododendron simsii HOM05D006407 ORTHO05D008079 1.7e-150 536.6 380 73.9
vmacro02816 Vaccinium macrocarpon HOM05D006407 ORTHO05D008079 1.9e-149 533.1 440 66.6
EL10Ac5g10625 Beta vulgaris HOM05D006407 ORTHO05D008079 9.3e-149 530.8 379 76.0
Sopen09g019480 Solanum pennellii HOM05D006407 ORTHO05D008079 9.3e-149 530.8 378 73.8
Oeu057833.1 Olea europaea HOM05D006407 ORTHO05D008079 2.1e-148 529.6 395 71.4
AUR62008121 Chenopodium quinoa HOM05D006407 ORTHO05D008079 3.5e-148 528.9 413 69.7
Hma1.2p1_0161F.1_g071410 Hydrangea macrophylla HOM05D006407 ORTHO05D008079 7.9e-148 527.7 353 76.8
PGSC0003DMG400013943 Solanum tuberosum HOM05D006407 ORTHO05D008079 1.3e-147 526.9 378 73.3
Solyc09g056160.4 Solanum lycopersicum HOM05D006407 ORTHO05D008079 3.9e-147 525.4 352 77.0
MSTRG.18495 Avicennia marina HOM05D006407 ORTHO05D008079 7.4e-146 521.2 392 71.7
MD10G1151900 Malus domestica HOM05D006407 ORTHO05D008079 1.8e-144 516.5 383 72.8
PSO017G7241 Papaver somniferum HOM05D006407 ORTHO05D008079 4.0e-144 515.4 401 71.1
Psat6g036520 Pisum sativum HOM05D006407 ORTHO05D008079 5.3e-144 515.0 376 73.7
COL.COLO4_26571 Corchorus olitorius HOM05D006407 ORTHO05D008079 1.2e-143 513.8 412 71.4
Gohir.D07G167200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 2.0e-143 513.1 398 72.6
PSO675G1275 Papaver somniferum HOM05D006407 ORTHO05D008079 1.3e-142 510.4 402 69.7
ECA247G2281 Erigeron canadensis HOM05D006407 ORTHO05D008079 1.9e-141 506.5 391 70.3
HanXRQChr08g0231421 Helianthus annuus HOM05D006407 ORTHO05D008079 7.1e-141 504.6 389 71.2
Medtr1g007490 Medicago truncatula HOM05D006407 ORTHO05D008079 9.3e-141 504.2 393 70.5
Lj1g0005258 Lotus japonicus HOM05D006407 ORTHO05D008079 1.2e-140 503.8 398 69.6
Lsat_1_v5_gn_9_16300 Lactuca sativa HOM05D006407 ORTHO05D008079 8.7e-139 497.7 394 70.1
Glyma.16G083300 Glycine max HOM05D006407 ORTHO05D008079 1.5e-138 496.9 378 70.4
Migut.D00736 Erythranthe guttata HOM05D006407 ORTHO05D008079 1.9e-138 496.5 376 72.3
Glyma.03G089700 Glycine max HOM05D006407 ORTHO05D008079 3.3e-138 495.7 375 70.1
Lalb_Chr07g0194511 Lupinus albus HOM05D006407 ORTHO05D008079 5.7e-138 495.0 387 70.0
Lj1C101T0 Lonicera japonica HOM05D006407 ORTHO05D008079 2.8e-137 492.7 352 73.9
arahy.Tifrunner.gnm1.ann1.FHDW0K Arachis hypogaea HOM05D006407 ORTHO05D008079 5.3e-136 488.4 366 72.1
arahy.Tifrunner.gnm1.ann1.Q8L9VW Arachis hypogaea HOM05D006407 ORTHO05D008079 6.9e-136 488.0 374 71.1
Nitab4.5_0000038g0130 Nicotiana tabacum HOM05D006407 ORTHO05D008079 5.9e-135 485.0 404 66.3
Nitab4.5_0003859g0020 Nicotiana tabacum HOM05D001236 ORTHO05D001090 3.8e-134 482.3 343 73.8
Ca_12772_v3 Cicer arietinum L. HOM05D006407 ORTHO05D008079 1.9e-133 479.9 296 82.8
HPP92_024258 Vanilla planifolia HOM05D006407 ORTHO05D008079 7.2e-133 478.0 398 65.6
ATR0686G167 Amborella trichopoda HOM05D006407 ORTHO05D008079 2.1e-132 476.5 345 70.7
Phvul.008G108300 Phaseolus vulgaris HOM05D006407 ORTHO05D008079 2.7e-132 476.1 372 68.3
Sabra02G0191100 Salix brachista HOM05D006407 ORTHO05D008079 2.8e-129 466.1 327 74.6
unitig_64.g29771 Utricularia gibba HOM05D006407 ORTHO05D008079 1.1e-128 464.2 323 73.7
SalBow6G2639 Salvia bowleyana HOM05D006407 ORTHO05D008079 1.8e-128 463.4 377 68.4
Zm00001eb169280 Zea mays HOM05D006407 ORTHO05D008079 1.2e-127 460.7 318 72.6
Atru.chr6.3545 Acer truncatum HOM05D006407 ORTHO05D008079 6.5e-126 454.9 305 78.4
SGA_v2.0_scaffold29G12072 Striga asiatica HOM05D006407 ORTHO05D008079 1.8e-123 446.8 453 58.9
VMungo1383G2551 Vigna mungo HOM05D006407 ORTHO05D008079 2.4e-112 409.8 385 60.3
Os11g0425300 Oryza sativa ssp. japonica HOM05D006407 ORTHO05D008079 7.7e-111 404.8 286 73.4
SEGI_39839 Sequoiadendron giganteum HOM05D006407 ORTHO05D008079 1.4e-104 384.0 318 64.2
CDE09G0438 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 2.3e-99 366.7 240 76.7
Duzib138G1048 Durio zibethinus HOM05D006407 ORTHO05D008079 8.6e-86 321.6 395 50.9
Nn1g08257 Nelumbo nucifera HOM05D006407 ORTHO05D008079 4.9e-81 305.8 241 68.0
BolC7t44437H Brassica oleracea HOM05D006407 ORTHO05D008079 2.4e-80 303.5 295 63.4
Mapoly0125s0038 Marchantia polymorpha HOM05D006407 ORTHO05D008079 9.2e-80 301.6 325 47.1
SMO367G1011 Selaginella moellendorffii HOM05D006407 ORTHO05D008079 2.0e-79 300.4 316 50.6
unitig_62.g23866 Utricularia gibba HOM05D006407 ORTHO05D008079 2.0e-79 300.4 295 58.3
HPP92_024262 Vanilla planifolia HOM05D006407 ORTHO05D008079 4.6e-79 299.3 201 74.6
C07p39170 Brassica napus HOM05D006407 ORTHO05D008079 9.5e-77 291.6 282 62.4
Pp3c19_21450 Physcomitrium patens HOM05D006407 ORTHO05D008079 2.3e-75 287.0 330 47.0
BcaC06g30794 Brassica carinata HOM05D006407 ORTHO05D008079 1.1e-72 278.1 486 41.6
MBI11_g07407_MAGBIO Magnolia biondii HOM05D006407 ORTHO05D003073 1.7e-70 270.8 905 29.0
AagrBONN_evm.TU.Sc2ySwM_368.2294 Anthoceros agrestis HOM05D006407 ORTHO05D008079 2.5e-69 266.9 256 53.5
Nn1g08232 Nelumbo nucifera HOM05D006407 ORTHO05D008079 3.7e-65 253.1 158 81.0
AUR62028699 Chenopodium quinoa HOM05D006407 ORTHO05D008079 6.0e-55 219.2 143 78.3
DCAR_004768 Daucus carota HOM05D006407 ORTHO05D008079 2.0e-50 204.1 157 72.6
BraA06t26831Z Brassica rapa HOM05D006407 ORTHO05D008079 2.8e-44 183.7 124 75.8
Migut.D00733 Erythranthe guttata HOM05D006407 ORTHO05D008079 1.9e-40 171.0 118 78.8
A06p39160 Brassica napus HOM05D006407 ORTHO05D008079 4.6e-39 166.4 177 55.9
CBR_g12604 Chara braunii HOM05D001724 ORTHO05D007284 1.5e-34 151.4 328 32.3
CDE02G0544 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 1.2e-23 115.2 82 70.7
arahy.Tifrunner.gnm1.ann1.91BFZF Arachis hypogaea HOM05D006407 ORTHO05D008079 3.6e-15 87.0 81 60.5
MCO11G451 Micromonas commoda HOM05D006407 ORTHO05D008079 3.0e-14 84.0 260 28.8
Lsat_1_v5_gn_9_60420 Lactuca sativa HOM05D001780 ORTHO05D008079 5.7e-13 79.7 46 82.6
Oeu032606.1 Olea europaea HOM05D006407 ORTHO05D008079 5.7e-13 79.7 48 79.2
Cre09.g393800 Chlamydomonas reinhardtii HOM05D006407 ORTHO05D008079 1.3e-12 78.6 276 29.7
MD05G1159200 Malus domestica HOM05D006407 ORTHO05D008079 2.4e-11 74.3 48 72.9
arahy.Tifrunner.gnm1.ann1.6HQ4SR Arachis hypogaea HOM05D006407 ORTHO05D008079 1.5e-10 71.6 74 58.1
arahy.Tifrunner.gnm1.ann1.63F50L Arachis hypogaea HOM05D000300 ORTHO05D000383 3.9e-06 57.0 47 68.1


User provided reference genes

Program Settings