Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G054100 Manihot esculenta HOM05D004226 ORTHO05D004842 1.6e-83 312.8 165 100.0
Duzib138G1045 Durio zibethinus HOM05D004226 ORTHO05D004842 1.0e-58 230.3 157 77.1
Gohir.A11G142500 Gossypium hirsutum HOM05D004226 ORTHO05D004842 1.5e-57 226.5 165 73.3
Gohir.D11G148800 Gossypium hirsutum HOM05D004226 ORTHO05D004842 2.0e-57 226.1 165 73.3
Gorai.007G159600 Gossypium raimondii HOM05D004226 ORTHO05D004842 4.9e-56 221.5 166 72.9
Duzib133G0243 Durio zibethinus HOM05D004226 ORTHO05D004842 8.3e-56 220.7 165 73.9
Haze_03501 Corylus avellana HOM05D004226 ORTHO05D004842 6.6e-53 211.1 161 71.4
Eucgr.H00726 Eucalyptus grandis HOM05D004226 ORTHO05D004842 8.6e-53 210.7 158 70.9
Cfa010569 Carpinus fangiana HOM05D004226 ORTHO05D004842 1.9e-52 209.5 161 72.0
Potri.002G251200 Populus trichocarpa HOM05D004226 ORTHO05D004842 1.1e-50 203.8 165 64.8
Thecc.01G211100 Theobroma cacao HOM05D004226 ORTHO05D004842 1.4e-50 203.4 159 69.2
CiPaw.13G055300 Carya illinoinensis HOM05D004226 ORTHO05D004842 1.8e-50 203.0 161 70.8
Phvul.008G136900 Phaseolus vulgaris HOM05D004226 ORTHO05D004842 2.3e-50 202.6 160 66.2
VMungo1383G2422 Vigna mungo HOM05D004226 ORTHO05D004842 8.9e-50 200.7 160 66.2
Glyma.18G152900 Glycine max HOM05D004226 ORTHO05D004842 1.3e-48 196.8 158 67.1
Lalb_Chr03g0041091 Lupinus albus HOM05D004226 ORTHO05D004842 1.7e-48 196.4 166 62.7
Dinv28812 Davidia involucrata HOM05D004226 ORTHO05D004842 1.1e-47 193.7 158 66.5
Lalb_Chr01g0021991 Lupinus albus HOM05D004226 ORTHO05D004842 1.9e-47 193.0 169 61.5
QL09p046251 Quercus lobata HOM05D004226 ORTHO05D004842 4.1e-47 191.8 168 63.1
TWI36G1598 Tripterygium wilfordii HOM05D004226 ORTHO05D004842 5.4e-47 191.4 161 66.5
Actinidia23795 Actinidia chinensis HOM05D004226 ORTHO05D004842 7.1e-47 191.0 156 66.0
Dinv10439 Davidia involucrata HOM05D004226 ORTHO05D004842 1.2e-46 190.3 164 64.6
ECA236G1737 Erigeron canadensis HOM05D004226 ORTHO05D004842 1.2e-46 190.3 158 66.5
PGR083G1064 Punica granatum HOM05D004226 ORTHO05D004842 1.6e-46 189.9 157 68.2
COL.COLO4_26572 Corchorus olitorius HOM05D004226 ORTHO05D004842 3.5e-46 188.7 157 65.6
vmacro02815 Vaccinium macrocarpon HOM05D004226 ORTHO05D004842 1.7e-45 186.4 155 65.2
Lsat_1_v5_gn_8_98041 Lactuca sativa HOM05D004226 ORTHO05D004842 8.6e-45 184.1 147 65.3
Sabra02G0191000 Salix brachista HOM05D004226 ORTHO05D004842 1.9e-44 183.0 191 54.5
Cpa.g.sc8.73 Carica papaya HOM05D004226 ORTHO05D004842 5.6e-44 181.4 156 63.5
HanXRQChr08g0231431 Helianthus annuus HOM05D004226 ORTHO05D004842 5.6e-44 181.4 152 63.2
Hund02794 Selenicereus undatus HOM05D004226 ORTHO05D004842 5.6e-44 181.4 166 60.2
Lj2A1117T18 Lonicera japonica HOM05D004226 ORTHO05D004842 7.3e-44 181.0 163 58.9
DCAR_018624 Daucus carota HOM05D004226 ORTHO05D004842 1.2e-43 180.3 156 60.3
Glyma.08G344200 Glycine max HOM05D004226 ORTHO05D004842 1.2e-43 180.3 160 61.9
THA.LOC104802646 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 1.2e-43 180.3 162 62.3
TWI18G1341 Tripterygium wilfordii HOM05D004226 ORTHO05D004842 1.2e-43 180.3 161 62.7
MSTRG.18494 Avicennia marina HOM05D004226 ORTHO05D004842 3.6e-43 178.7 153 63.4
Nitab4.5_0000038g0150 Nicotiana tabacum HOM05D004226 ORTHO05D004842 3.6e-43 178.7 160 63.8
CANSAT01G0104 Cannabis sativa HOM05D004226 ORTHO05D004842 4.7e-43 178.3 168 61.9
Hma1.2p1_0781F.1_g216920 Hydrangea macrophylla HOM05D004226 ORTHO05D004842 1.4e-42 176.8 175 58.3
Nitab4.5_0009151g0020 Nicotiana tabacum HOM05D004226 ORTHO05D004842 1.8e-42 176.4 160 63.1
Lj1g0015941 Lotus japonicus HOM05D004226 ORTHO05D004842 3.1e-42 175.6 162 60.5
HanXRQChr09g0257641 Helianthus annuus HOM05D004226 ORTHO05D004842 6.8e-42 174.5 164 58.5
Actinidia30018 Actinidia chinensis HOM05D004226 ORTHO05D004842 8.9e-42 174.1 155 62.6
Ciclev10016998m.g Citrus clementina HOM05D004226 ORTHO05D004842 8.9e-42 174.1 156 62.8
Oeu003656.1 Olea europaea HOM05D004226 ORTHO05D004842 1.2e-41 173.7 154 60.4
Rhsim13G0052600 Rhododendron simsii HOM05D004226 ORTHO05D004842 1.5e-41 173.3 162 61.1
HanXRQChr16g0507911 Helianthus annuus HOM05D004226 ORTHO05D004842 2.0e-41 172.9 169 57.4
Hund09468 Selenicereus undatus HOM05D004226 ORTHO05D004842 2.0e-41 172.9 168 54.8
EL10Ac5g10626 Beta vulgaris HOM05D004226 ORTHO05D004842 3.4e-41 172.2 156 60.3
Migut.N00664 Erythranthe guttata HOM05D004226 ORTHO05D004842 3.4e-41 172.2 141 63.1
Psat3g151000 Pisum sativum HOM05D004226 ORTHO05D004842 4.4e-41 171.8 158 57.6
vmacro14692 Vaccinium macrocarpon HOM05D004226 ORTHO05D004842 5.8e-41 171.4 166 58.4
TAR362G0792 Trochodendron aralioides HOM05D004226 ORTHO05D004842 4.9e-40 168.3 173 57.2
DCAR_012646 Daucus carota HOM05D004226 ORTHO05D004842 6.4e-40 167.9 168 58.3
Ah.11g051030 Amaranthus hybridus HOM05D004226 ORTHO05D004842 1.1e-39 167.2 162 57.4
Gohir.D07G094900 Gossypium hirsutum HOM05D004226 ORTHO05D004842 1.1e-39 167.2 147 63.3
TAR365G1191 Trochodendron aralioides HOM05D004226 ORTHO05D004842 1.4e-39 166.8 164 57.9
Actinidia34543 Actinidia chinensis HOM05D004226 ORTHO05D004842 2.4e-39 166.0 156 60.3
TPR.G26804 Trifolium pratense HOM05D004226 ORTHO05D004842 4.1e-39 165.2 165 57.0
THA.LOC104822467 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 5.4e-39 164.9 162 59.3
Gohir.A07G090200 Gossypium hirsutum HOM05D004226 ORTHO05D004842 7.1e-39 164.5 147 61.9
Gorai.001G102200 Gossypium raimondii HOM05D004226 ORTHO05D004842 7.1e-39 164.5 147 62.6
ClCG05G015470 Citrullus lanatus HOM05D004226 ORTHO05D004842 1.6e-38 163.3 159 56.6
Nitab4.5_0002311g0050 Nicotiana tabacum HOM05D004226 ORTHO05D004842 1.6e-38 163.3 166 55.4
Rhsim01G0248500 Rhododendron simsii HOM05D004226 ORTHO05D004842 3.5e-38 162.2 159 54.7
Aa31sc186G10 Aethionema arabicum HOM05D004226 ORTHO05D004842 4.6e-38 161.8 158 56.3
Aqoxy2G03959 Aquilegia oxysepala HOM05D004226 ORTHO05D004842 1.0e-37 160.6 163 55.8
Peaxi162Scf00372g00004 Petunia axillaris HOM05D004226 ORTHO05D004842 1.3e-37 160.2 164 54.9
Cc01_g16140 Coffea canephora HOM05D004226 ORTHO05D004842 2.3e-37 159.5 160 55.6
Nitab4.5_0002167g0150 Nicotiana tabacum HOM05D004226 ORTHO05D004842 3.9e-37 158.7 166 54.8
SGA_v2.0_scaffold8G04494 Striga asiatica HOM05D004226 ORTHO05D004842 3.9e-37 158.7 157 58.0
MELO3C003732.2 Cucumis melo HOM05D004226 ORTHO05D004842 6.6e-37 157.9 159 55.3
CSS0019192 Camellia sinensis var. sinensis HOM05D004226 ORTHO05D004842 8.6e-37 157.5 121 68.6
Medtr7g052690 Medicago truncatula HOM05D004226 ORTHO05D004842 1.5e-36 156.8 167 53.9
THA.LOC104818997 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 1.5e-36 156.8 161 57.8
SGA_v2.0_scaffold624G53238 Striga asiatica HOM05D004226 ORTHO05D004842 2.5e-36 156.0 155 56.1
TAR633G1997 Trochodendron aralioides HOM05D004226 ORTHO05D004842 4.3e-36 155.2 163 52.8
CsaV3_3G046080 Cucumis sativus L. HOM05D004226 ORTHO05D004842 5.6e-36 154.8 159 54.1
Thhalv10005050m.g Eutrema salsugineum HOM05D004226 ORTHO05D004842 5.6e-36 154.8 162 51.9
C09p04850 Brassica napus HOM05D004226 ORTHO05D004842 7.3e-36 154.5 164 52.4
DCAR_004767 Daucus carota HOM05D004226 ORTHO05D004842 7.3e-36 154.5 155 54.2
Oeu057834.2 Olea europaea HOM05D000039 ORTHO05D005440 9.6e-36 154.1 145 59.3
MSTRG.21303 Avicennia marina HOM05D004226 ORTHO05D004842 1.6e-35 153.3 159 54.1
ECA247G2547 Erigeron canadensis HOM05D004226 ORTHO05D004842 2.1e-35 152.9 150 52.7
Sp2g18850 Schrenkiella parvula HOM05D004226 ORTHO05D004842 4.7e-35 151.8 168 52.4
A09p04540 Brassica napus HOM05D004226 ORTHO05D004842 6.2e-35 151.4 161 52.2
BraA09t36089Z Brassica rapa HOM05D004226 ORTHO05D004842 6.2e-35 151.4 161 52.2
AUR62028700 Chenopodium quinoa HOM05D004226 ORTHO05D004842 6.2e-35 151.4 159 55.3
AUR62008122 Chenopodium quinoa HOM05D004226 ORTHO05D004842 1.4e-34 150.2 152 57.9
Nn1g08255 Nelumbo nucifera HOM05D004226 ORTHO05D004842 4.0e-34 148.7 174 49.4
PGSC0003DMG400020653 Solanum tuberosum HOM05D004226 ORTHO05D004842 1.2e-33 147.1 161 54.0
SGA_v2.0_scaffold29G12070 Striga asiatica HOM05D004226 ORTHO05D004842 1.5e-33 146.7 186 48.4
Prupe.8G190400 Prunus persica HOM05D004226 ORTHO05D004842 2.0e-33 146.4 166 55.4
BcaC03g17654 Brassica carinata HOM05D004226 ORTHO05D004842 2.6e-33 146.0 161 51.6
Sopen06g002500 Solanum pennellii HOM05D004226 ORTHO05D004842 2.6e-33 146.0 161 50.9
BcaC06g30793 Brassica carinata HOM05D004226 ORTHO05D004842 5.8e-33 144.8 160 51.2
BolC2t11714H Brassica oleracea HOM05D004226 ORTHO05D004842 5.8e-33 144.8 161 50.9
C02p56560 Brassica napus HOM05D004226 ORTHO05D004842 7.6e-33 144.4 161 50.9
PGSC0003DMG400027348 Solanum tuberosum HOM05D004226 ORTHO05D004842 1.7e-32 143.3 160 50.6
Solyc06g007610.2 Solanum lycopersicum HOM05D004226 ORTHO05D004842 2.2e-32 142.9 161 50.3
BcaC04g23773 Brassica carinata HOM05D004226 ORTHO05D004842 2.9e-32 142.5 162 50.0
BolC7t44438H Brassica oleracea HOM05D004226 ORTHO05D004842 2.9e-32 142.5 160 50.6
BolC9t53412H Brassica oleracea HOM05D004226 ORTHO05D004842 2.9e-32 142.5 162 50.0
Duzib168G0485 Durio zibethinus HOM05D004226 ORTHO05D004842 3.8e-32 142.1 143 57.3
SHI10249 Sapria himalayana HOM05D004226 ORTHO05D004842 3.8e-32 142.1 138 52.9
Sc17g0001670 Simmondsia chinensis HOM05D004226 ORTHO05D004842 3.8e-32 142.1 157 51.0
Sed0006210 Sechium edule HOM05D004226 ORTHO05D004842 4.9e-32 141.7 168 50.6
A02p37490 Brassica napus HOM05D004226 ORTHO05D004842 8.4e-32 141.0 162 50.0
BraA06t26830Z Brassica rapa HOM05D004226 ORTHO05D004842 8.4e-32 141.0 161 52.2
A06p39150 Brassica napus HOM05D004226 ORTHO05D004842 1.1e-31 140.6 161 52.2
BraA02t08736Z Brassica rapa HOM05D004226 ORTHO05D004842 1.1e-31 140.6 161 50.3
HPP92_024259 Vanilla planifolia HOM05D004226 ORTHO05D004842 1.9e-31 139.8 154 51.9
Sopen11g003480 Solanum pennellii HOM05D004226 ORTHO05D004842 3.2e-31 139.0 161 50.3
Migut.D00735 Erythranthe guttata HOM05D004226 ORTHO05D004842 5.4e-31 138.3 149 50.3
C07p39180 Brassica napus HOM05D004226 ORTHO05D004842 7.1e-31 137.9 162 50.0
Lj3g0001126 Lotus japonicus HOM05D004226 ORTHO05D004842 7.1e-31 137.9 136 52.9
Lj3g0009756 Lotus japonicus HOM05D004226 ORTHO05D004842 3.5e-30 135.6 155 52.3
PSO017G4362 Papaver somniferum HOM05D004226 ORTHO05D004842 7.8e-30 134.4 149 48.3
PSO675G4654 Papaver somniferum HOM05D004226 ORTHO05D004842 1.0e-29 134.0 148 48.6
Migut.D00732 Erythranthe guttata HOM05D004226 ORTHO05D004842 8.7e-29 131.0 153 47.1
Duzib170G0075 Durio zibethinus HOM05D004226 ORTHO05D004842 1.9e-28 129.8 136 55.1
Carub.0008s0806 Capsella rubella HOM05D004226 ORTHO05D004842 5.6e-28 128.3 170 43.5
Duzib138G0271 Durio zibethinus HOM05D004226 ORTHO05D004842 5.6e-28 128.3 139 52.5
Duzib205G0826 Durio zibethinus HOM05D004226 ORTHO05D004842 1.3e-27 127.1 150 48.0
CAN.G181.39 Capsicum annuum HOM05D004226 ORTHO05D004842 6.2e-27 124.8 144 50.7
Duzib211G0475 Durio zibethinus HOM05D004226 ORTHO05D004842 3.1e-26 122.5 134 52.2
ATR0686G035 Amborella trichopoda HOM05D004226 ORTHO05D004842 5.3e-26 121.7 161 47.2
SEGI_00481 Sequoiadendron giganteum HOM05D004226 ORTHO05D004842 1.2e-25 120.6 163 44.8
AT5G48480 Arabidopsis thaliana HOM05D004226 ORTHO05D004842 1.5e-25 120.2 166 42.8
CDE05G1161 Ceratophyllum demersum HOM05D004226 ORTHO05D004842 2.9e-24 115.9 162 44.4
AL8G21330 Arabidopsis lyrata HOM05D004226 ORTHO05D004842 4.9e-24 115.2 166 38.6
CARHR183600 Cardamine hirsuta HOM05D004226 ORTHO05D004842 1.1e-23 114.0 159 45.9
Duzib147G0221 Durio zibethinus HOM05D004226 ORTHO05D004842 2.4e-23 112.8 124 51.6
Mapoly0001s0501 Marchantia polymorpha HOM05D004226 ORTHO05D004842 3.2e-23 112.5 157 43.3
BcaB07g30025 Brassica carinata HOM05D004226 ORTHO05D004842 5.4e-23 111.7 157 44.6
FAN27G2858 Fragaria x ananassa HOM05D004226 ORTHO05D004842 9.3e-23 110.9 165 44.2
FAN27G3147 Fragaria x ananassa HOM05D004226 ORTHO05D004842 9.3e-23 110.9 165 44.2
FAN15G3314 Fragaria x ananassa HOM05D004226 ORTHO05D004842 1.2e-22 110.5 165 44.2
RcHm_v2.0_Chr6g0282841 Rosa chinensis HOM05D004226 ORTHO05D004842 1.6e-22 110.2 164 45.1
FvH4_2g17810 Fragaria vesca HOM05D004226 ORTHO05D004842 4.6e-22 108.6 154 44.2
FAN24G0678 Fragaria x ananassa HOM05D004226 ORTHO05D004842 6.0e-22 108.2 154 44.2
MD05G1159600 Malus domestica HOM05D004226 ORTHO05D004842 6.0e-22 108.2 168 42.3
Atru.chr6.3547 Acer truncatum HOM05D004226 ORTHO05D004842 1.3e-21 107.1 121 52.9
MD10G1152100 Malus domestica HOM05D004226 ORTHO05D004842 2.3e-21 106.3 171 42.1
Ca_07469_v3 Cicer arietinum L. HOM05D004226 ORTHO05D004842 5.1e-21 105.1 88 61.4
Ca_30573_v3 Cicer arietinum L. HOM05D004226 ORTHO05D004842 5.1e-21 105.1 88 61.4
CDE05G0628 Ceratophyllum demersum HOM05D004226 ORTHO05D004842 2.8e-19 99.4 118 48.3
SMO146G0354 Selaginella moellendorffii HOM05D004226 ORTHO05D004842 1.1e-18 97.4 130 43.1
Cfa011865 Carpinus fangiana HOM05D004226 ORTHO05D004842 1.8e-18 96.7 90 63.3
BcaB07g30020 Brassica carinata HOM05D004226 ORTHO05D004842 1.3e-16 90.5 107 48.6
BcaC06g31007 Brassica carinata HOM05D004226 ORTHO05D004842 1.3e-16 90.5 159 41.5
Lj2P1154T27 Lonicera japonica HOM05D004226 ORTHO05D004842 1.3e-16 90.5 75 60.0
Glyma.14G148600 Glycine max HOM05D004226 ORTHO05D004842 7.1e-15 84.7 72 62.5
Psat0s337g0040 Pisum sativum HOM05D004226 ORTHO05D004842 3.5e-14 82.4 91 49.5
unitig_0.g1219 Utricularia gibba HOM05D004226 ORTHO05D004842 2.4e-10 69.7 68 48.5
Sc19g0005500 Simmondsia chinensis HOM05D004226 ORTHO05D004842 9.0e-10 67.8 82 46.3
Pp3c13_5750 Physcomitrium patens HOM05D004226 ORTHO05D004842 5.8e-09 65.1 144 31.2
SGA_v2.0_scaffold85G26613 Striga asiatica HOM05D005727 ORTHO05D007324 1.7e-08 63.5 88 40.9
Ciclev10023033m.g Citrus clementina HOM05D004226 ORTHO05D004842 1.1e-07 60.8 51 62.7
Peaxi162Scf00585g01023 Petunia axillaris HOM05D004226 ORTHO05D004842 2.5e-07 59.7 55 60.0
Medtr8g011510 Medicago truncatula HOM05D004226 ORTHO05D004842 5.5e-07 58.5 131 35.1
SEGI_39221 Sequoiadendron giganteum HOM05D004226 ORTHO05D004842 5.5e-07 58.5 79 41.8
Nn4g25974 Nelumbo nucifera HOM05D066638 ORTHO05D004842 9.3e-07 57.8 62 46.8
Nn7g37465 Nelumbo nucifera HOM05D004226 ORTHO05D004842 9.3e-07 57.8 62 46.8
DCAR_023429 Daucus carota HOM05D057861 ORTHO05D004842 1.2e-06 57.4 144 27.8
Nn7g37876 Nelumbo nucifera HOM05D001231 ORTHO05D001012 2.1e-06 56.6 61 47.5


User provided reference genes

Program Settings