Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G053501 Manihot esculenta HOM05D006684 ORTHO05D008443 1.0e-77 293.9 217 100.0
Manes.12G048301 Manihot esculenta HOM05D006684 ORTHO05D008443 1.5e-73 280.0 217 98.2
Manes.12G048300 Manihot esculenta HOM05D006684 ORTHO05D008443 4.1e-71 271.9 221 76.5
Manes.05G043400 Manihot esculenta HOM05D006684 ORTHO05D008443 3.1e-66 255.8 239 66.1
Cpa.g.sc18.149 Carica papaya HOM05D006684 ORTHO05D008443 5.5e-39 165.2 229 46.3
COL.COLO4_12585 Corchorus olitorius HOM05D006684 ORTHO05D008443 1.9e-36 156.8 214 46.7
Cfa010232 Carpinus fangiana HOM05D006684 ORTHO05D008443 2.8e-35 152.9 237 46.8
TWI59G0969 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 3.7e-35 152.5 236 42.4
Ciclev10022036m.g Citrus clementina HOM05D006684 ORTHO05D008443 3.1e-34 149.4 233 44.2
GSVIVG01027546001 Vitis vinifera HOM05D006684 ORTHO05D008443 5.3e-34 148.7 247 41.3
CiPaw.01G260000 Carya illinoinensis HOM05D006684 ORTHO05D008443 1.2e-33 147.5 221 44.3
TAR636G0929 Trochodendron aralioides HOM05D006684 ORTHO05D008443 4.5e-33 145.6 236 40.3
Prupe.2G148900 Prunus persica HOM05D006684 ORTHO05D008443 7.6e-33 144.8 233 42.5
CSS0020305 Camellia sinensis var. sinensis HOM05D006684 ORTHO05D008443 1.0e-32 144.4 237 40.5
Thecc.01G373000 Theobroma cacao HOM05D006684 ORTHO05D008443 1.0e-32 144.4 222 47.3
Sed0022399 Sechium edule HOM05D006684 ORTHO05D008443 1.3e-32 144.1 233 39.1
MELO3C022508.2 Cucumis melo HOM05D006684 ORTHO05D008443 2.2e-32 143.3 233 39.5
Atru.chr5.338 Acer truncatum HOM05D006684 ORTHO05D008443 1.1e-31 141.0 233 40.8
CsaV3_6G006090 Cucumis sativus L. HOM05D006684 ORTHO05D008443 4.2e-31 139.0 233 46.8
QL08p051764 Quercus lobata HOM05D006684 ORTHO05D008443 7.1e-31 138.3 234 47.9
THA.LOC104801995 Tarenaya hassleriana HOM05D006684 ORTHO05D008443 7.1e-31 138.3 233 41.2
Nn6g34351 Nelumbo nucifera HOM05D006684 ORTHO05D008443 2.7e-30 136.3 240 40.8
arahy.Tifrunner.gnm1.ann1.3Z62KU Arachis hypogaea HOM05D006684 ORTHO05D008443 1.0e-29 134.4 231 39.4
LjContig00136g0018410 Lotus japonicus HOM05D006684 ORTHO05D008443 1.3e-29 134.0 214 40.2
Gohir.A11G082800 Gossypium hirsutum HOM05D006684 ORTHO05D008443 1.8e-29 133.7 234 39.3
Gorai.007G092800 Gossypium raimondii HOM05D006684 ORTHO05D008443 1.8e-29 133.7 242 38.8
arahy.Tifrunner.gnm1.ann1.CFQ18P Arachis hypogaea HOM05D006684 ORTHO05D008443 2.3e-29 133.3 231 39.8
BcaC02g07085 Brassica carinata HOM05D006684 ORTHO05D008443 2.3e-29 133.3 237 49.4
Dinv32395 Davidia involucrata HOM05D006684 ORTHO05D008443 2.3e-29 133.3 235 39.1
Gohir.D11G086900 Gossypium hirsutum HOM05D006684 ORTHO05D008443 3.0e-29 132.9 242 38.8
Lalb_Chr03g0039091 Lupinus albus HOM05D006684 ORTHO05D008443 3.0e-29 132.9 230 45.2
Sp4g27550 Schrenkiella parvula HOM05D006684 ORTHO05D008443 3.0e-29 132.9 234 39.3
Nitab4.5_0010110g0010 Nicotiana tabacum HOM05D006684 ORTHO05D008443 3.9e-29 132.5 229 38.9
Thhalv10001611m.g Eutrema salsugineum HOM05D006684 ORTHO05D008443 5.1e-29 132.1 233 47.6
PGR042G1390 Punica granatum HOM05D006684 ORTHO05D008443 6.7e-29 131.7 236 36.9
Phvul.008G074700 Phaseolus vulgaris HOM05D006684 ORTHO05D008443 8.7e-29 131.3 230 40.9
VMungo1383G3715 Vigna mungo HOM05D006684 ORTHO05D008443 1.1e-28 131.0 231 39.0
Carub.0004s2814 Capsella rubella HOM05D006684 ORTHO05D008443 1.5e-28 130.6 212 50.0
Duzib133G0994 Durio zibethinus HOM05D006684 ORTHO05D008443 1.5e-28 130.6 214 41.6
Glyma.09G267200 Glycine max HOM05D006684 ORTHO05D008443 2.5e-28 129.8 225 40.0
Hund17005 Selenicereus undatus HOM05D006684 ORTHO05D008443 2.5e-28 129.8 240 47.9
Sopen05g028070 Solanum pennellii HOM05D006684 ORTHO05D008443 2.5e-28 129.8 235 37.4
C04p71620 Brassica napus HOM05D000147 ORTHO05D007841 4.3e-28 129.0 241 39.8
PGSC0003DMG400021635 Solanum tuberosum HOM05D006684 ORTHO05D008443 7.4e-28 128.3 235 37.9
AL4G44700 Arabidopsis lyrata HOM05D006684 ORTHO05D008443 9.6e-28 127.9 212 41.0
CDE04G1869 Ceratophyllum demersum HOM05D006684 ORTHO05D008443 9.6e-28 127.9 236 36.9
BcaB06g29418 Brassica carinata HOM05D006684 ORTHO05D008443 1.3e-27 127.5 235 46.8
MD02G1199700 Malus domestica HOM05D006684 ORTHO05D008443 1.3e-27 127.5 219 47.0
BraA04t18849Z Brassica rapa HOM05D000147 ORTHO05D007841 1.6e-27 127.1 232 46.6
CANSAT94G0012 Cannabis sativa HOM05D006684 ORTHO05D008443 1.6e-27 127.1 232 43.1
RcHm_v2.0_Chr1g0351131 Rosa chinensis HOM05D006684 ORTHO05D008443 2.8e-27 126.3 220 41.4
TPR.G37765 Trifolium pratense HOM05D006684 ORTHO05D008443 3.7e-27 125.9 214 42.5
AT2G45520 Arabidopsis thaliana HOM05D006684 ORTHO05D008443 4.8e-27 125.6 212 46.7
BolC4t28667H Brassica oleracea HOM05D000147 ORTHO05D007841 8.2e-27 124.8 232 47.0
FvH4_7g12340 Fragaria vesca HOM05D006684 ORTHO05D008443 1.8e-26 123.6 223 42.6
FAN06G2821 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.8e-26 123.6 223 42.6
FAN06G3889 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.8e-26 123.6 223 42.6
MSTRG.4882 Avicennia marina HOM05D006684 ORTHO05D008443 3.1e-26 122.9 238 39.5
CARHR140710 Cardamine hirsuta HOM05D006684 ORTHO05D008443 5.3e-26 122.1 235 44.7
Cc02_g36430 Coffea canephora HOM05D006684 ORTHO05D008443 5.3e-26 122.1 231 35.9
Nitab4.5_0001702g0200 Nicotiana tabacum HOM05D006684 ORTHO05D008443 5.3e-26 122.1 220 57.7
FAN10G0264 Fragaria x ananassa HOM05D006684 ORTHO05D008443 6.9e-26 121.7 232 45.3
FAN10G2097 Fragaria x ananassa HOM05D006684 ORTHO05D008443 6.9e-26 121.7 232 54.7
Aqoxy7G00540 Aquilegia oxysepala HOM05D006684 ORTHO05D008443 9.0e-26 121.3 237 39.7
FAN01G2432 Fragaria x ananassa HOM05D006684 ORTHO05D008443 9.0e-26 121.3 222 41.9
Aa31LG1G27020 Aethionema arabicum HOM05D006684 ORTHO05D008443 1.2e-25 120.9 229 43.7
Medtr7g075640 Medicago truncatula HOM05D006684 ORTHO05D008443 1.2e-25 120.9 203 42.9
ClCG06G000300 Citrullus lanatus HOM05D006684 ORTHO05D008443 3.4e-25 119.4 276 37.7
ECA240G0119 Erigeron canadensis HOM05D006684 ORTHO05D008443 1.3e-24 117.5 223 41.3
SalBow5G5079 Salvia bowleyana HOM05D006684 ORTHO05D008443 3.8e-24 115.9 225 39.1
SGA_v2.0_scaffold11G05605 Striga asiatica HOM05D006684 ORTHO05D008443 3.8e-24 115.9 223 46.2
FAN03G1779 Fragaria x ananassa HOM05D006684 ORTHO05D008443 6.5e-24 115.2 233 43.8
Potri.014G072400 Populus trichocarpa HOM05D006684 ORTHO05D008443 1.1e-23 114.4 229 40.6
SalBow5G0966 Salvia bowleyana HOM05D006684 ORTHO05D008443 1.4e-23 114.0 225 38.7
A04p33890 Brassica napus HOM05D000147 ORTHO05D007841 2.5e-23 113.2 240 43.8
EL10Ac1g00926 Beta vulgaris HOM05D006684 ORTHO05D008443 3.2e-23 112.8 234 35.0
Lsat_1_v5_gn_3_135520 Lactuca sativa HOM05D006684 ORTHO05D008443 4.2e-23 112.5 235 38.3
HanXRQChr03g0093671 Helianthus annuus HOM05D006684 ORTHO05D008443 5.5e-23 112.1 235 38.7
Eucgr.E01357 Eucalyptus grandis HOM05D006684 ORTHO05D008443 4.6e-22 109.0 230 33.0
Peaxi162Scf00207g00165 Petunia axillaris HOM05D006684 ORTHO05D008443 1.3e-21 107.5 230 43.0
Os06g0129800 Oryza sativa ssp. japonica HOM05D006684 ORTHO05D008443 3.9e-21 105.9 237 33.8
CAN.G333.1 Capsicum annuum HOM05D006684 ORTHO05D008443 8.7e-21 104.8 229 48.5
BolC4t22271H Brassica oleracea HOM05D006684 ORTHO05D008443 1.9e-20 103.6 212 34.9
AUR62004244 Chenopodium quinoa HOM05D006684 ORTHO05D008443 1.9e-20 103.6 209 36.8
Haze_16739 Corylus avellana HOM05D006684 ORTHO05D008443 2.8e-19 99.8 73 67.1
PSO478G1842 Papaver somniferum HOM05D006684 ORTHO05D008443 3.7e-19 99.4 247 42.9
Zm00001eb378390 Zea mays HOM05D006684 ORTHO05D008443 4.8e-19 99.0 233 33.5
Hma1.2p1_0053F.1_g030880 Hydrangea macrophylla HOM05D006684 ORTHO05D008443 1.4e-18 97.4 244 38.1
Oeu036610.1 Olea europaea HOM05D006684 ORTHO05D008443 5.9e-17 92.0 79 53.2
Duzib138G0092 Durio zibethinus HOM05D006684 ORTHO05D008443 2.9e-16 89.7 73 63.0
TWI23G1019 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 3.8e-16 89.4 75 57.3
BraA05t19524Z Brassica rapa HOM05D006684 ORTHO05D008443 6.5e-16 88.6 205 32.2
Solyc05g048750.3 Solanum lycopersicum HOM05D006684 ORTHO05D008443 8.5e-16 88.2 113 46.0
Migut.N01586 Erythranthe guttata HOM05D006684 ORTHO05D008443 1.1e-15 87.8 69 60.9
Ca_07836_v3 Cicer arietinum L. HOM05D006684 ORTHO05D008443 1.4e-15 87.4 76 56.6
unitig_578.g16483 Utricularia gibba HOM05D006684 ORTHO05D008443 1.4e-15 87.4 74 56.8
Psat3g104080 Pisum sativum HOM05D006684 ORTHO05D008443 1.9e-15 87.0 77 61.0
Rhsim01G0161500 Rhododendron simsii HOM05D006684 ORTHO05D008443 3.2e-15 86.3 79 54.4
Actinidia33456 Actinidia chinensis HOM05D006684 ORTHO05D008443 5.5e-15 85.5 47 83.0
AUR62013604 Chenopodium quinoa HOM05D006684 ORTHO05D008443 7.2e-15 85.1 223 33.2
Sc02g0002410 Simmondsia chinensis HOM05D006684 ORTHO05D008443 9.4e-15 84.7 113 40.7
vmacro20994 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 9.4e-15 84.7 350 25.7
Ah.07g198740 Amaranthus hybridus HOM05D006684 ORTHO05D008443 1.2e-14 84.3 193 32.6
Haze_16738 Corylus avellana HOM05D006684 ORTHO05D008443 3.6e-14 82.8 59 72.9
PSO782G3084 Papaver somniferum HOM05D006684 ORTHO05D008443 4.6e-14 82.4 78 56.4
vmacro20995 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 4.6e-14 82.4 72 56.9
ATR0757G101 Amborella trichopoda HOM05D006684 ORTHO05D008443 1.4e-13 80.9 71 56.3
SEGI_35511 Sequoiadendron giganteum HOM05D006684 ORTHO05D008443 2.3e-13 80.1 236 33.5
Duzib138G0657 Durio zibethinus HOM05D006684 ORTHO05D008443 1.1e-12 77.8 109 44.0
C04p06480 Brassica napus HOM05D000921 ORTHO05D002852 4.4e-12 75.9 82 50.0
MBI12_g38018_MAGBIO Magnolia biondii HOM05D006684 ORTHO05D008443 3.7e-11 72.8 61 60.7
Zm00001eb269540 Zea mays HOM05D006684 ORTHO05D008443 4.1e-10 69.3 72 54.2
SMO347G0023 Selaginella moellendorffii HOM05D006684 ORTHO05D008443 8.5e-08 61.6 205 28.8
SGA_v2.0_scaffold43G16466 Striga asiatica HOM05D006684 ORTHO05D008443 3.2e-07 59.7 67 41.8
Mapoly0084s0081 Marchantia polymorpha HOM05D006684 ORTHO05D008443 9.4e-07 58.2 66 48.5
Pp3c22_10350 Physcomitrium patens HOM05D006684 ORTHO05D008443 2.1e-06 57.0 232 27.2
AagrBONN_evm.TU.Sc2ySwM_344.4110 Anthoceros agrestis HOM05D006684 ORTHO05D008443 7.9e-06 55.1 75 44.0


User provided reference genes

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