Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G052500 Manihot esculenta HOM05D006940 ORTHO05D008626 2.0e-58 228.8 110 100.0
QL09p045850 Quercus lobata HOM05D006940 ORTHO05D008626 2.3e-33 145.6 112 67.0
Thecc.01G212400 Theobroma cacao HOM05D006940 ORTHO05D008626 2.5e-32 142.1 109 67.9
Manes.13G053500 Manihot esculenta HOM05D006940 ORTHO05D008626 1.6e-31 139.4 87 79.3
Potri.002G249901 Populus trichocarpa HOM05D006940 ORTHO05D008626 4.7e-31 137.9 110 64.5
TWI36G1176 Tripterygium wilfordii HOM05D006940 ORTHO05D008626 8.1e-31 137.1 111 63.1
Gorai.N003800 Gossypium raimondii HOM05D006940 ORTHO05D008626 1.1e-30 136.7 109 64.2
CiPaw.13G054100 Carya illinoinensis HOM05D006940 ORTHO05D008626 3.1e-30 135.2 116 61.2
Gohir.D07G166700 Gossypium hirsutum HOM05D006940 ORTHO05D008626 3.1e-30 135.2 109 64.2
Ciclev10033128m.g Citrus clementina HOM05D006940 ORTHO05D008626 5.2e-30 134.4 114 66.7
Duzib211G0506 Durio zibethinus HOM05D006940 ORTHO05D008626 5.2e-30 134.4 111 64.9
Gohir.A07G159700 Gossypium hirsutum HOM05D006940 ORTHO05D008626 6.8e-30 134.0 109 64.2
RcHm_v2.0_Chr6g0283181 Rosa chinensis HOM05D006940 ORTHO05D008626 1.2e-29 133.3 105 69.5
FvH4_2g17950 Fragaria vesca HOM05D006940 ORTHO05D008626 4.4e-29 131.3 105 68.6
FAN15G1530 Fragaria x ananassa HOM05D006940 ORTHO05D008626 4.4e-29 131.3 105 68.6
FAN24G1170 Fragaria x ananassa HOM05D006940 ORTHO05D008626 7.5e-29 130.6 103 64.1
Dinv28817 Davidia involucrata HOM05D006940 ORTHO05D008626 9.9e-29 130.2 118 58.5
MD05G1163400 Malus domestica HOM05D006940 ORTHO05D008626 1.3e-28 129.8 103 63.1
Psat0s1437g0080 Pisum sativum HOM05D006940 ORTHO05D008626 1.3e-28 129.8 110 61.8
Duzib133G0939 Durio zibethinus HOM05D006940 ORTHO05D008626 1.7e-28 129.4 110 66.4
Duzib138G0498 Durio zibethinus HOM05D006940 ORTHO05D008626 2.2e-28 129.0 110 65.5
Gorai.007G158800 Gossypium raimondii HOM05D006940 ORTHO05D008626 2.9e-28 128.6 110 62.7
CiPaw.14G043100 Carya illinoinensis HOM05D006940 ORTHO05D008626 3.7e-28 128.3 114 59.6
FAN27G2163 Fragaria x ananassa HOM05D006940 ORTHO05D008626 3.7e-28 128.3 104 66.3
Glyma.08G345100 Glycine max HOM05D006940 ORTHO05D008626 4.9e-28 127.9 107 63.6
Gohir.D11G148100 Gossypium hirsutum HOM05D006940 ORTHO05D008626 4.9e-28 127.9 110 61.8
Gohir.A11G141800 Gossypium hirsutum HOM05D006940 ORTHO05D008626 6.4e-28 127.5 110 61.8
Glyma.18G152800 Glycine max HOM05D006940 ORTHO05D008626 8.3e-28 127.1 106 66.0
TWI75G1309 Tripterygium wilfordii HOM05D006940 ORTHO05D008626 1.1e-27 126.7 112 58.9
TAR365G0827 Trochodendron aralioides HOM05D006940 ORTHO05D008626 1.1e-27 126.7 107 61.7
Phvul.008G137700 Phaseolus vulgaris HOM05D006940 ORTHO05D008626 1.9e-27 125.9 110 63.6
Atru.chr6.1604 Acer truncatum HOM05D006940 ORTHO05D008626 2.4e-27 125.6 117 61.5
Prupe.8G192000 Prunus persica HOM05D006940 ORTHO05D008626 2.4e-27 125.6 104 62.5
CSS0043498 Camellia sinensis var. sinensis HOM05D006940 ORTHO05D008626 5.4e-27 124.4 110 60.9
Gohir.D07G203400 Gossypium hirsutum HOM05D006940 ORTHO05D008626 7.1e-27 124.0 112 64.3
TPR.G26809 Trifolium pratense HOM05D006940 ORTHO05D008626 7.1e-27 124.0 110 60.9
Eucgr.K02098 Eucalyptus grandis HOM05D006940 ORTHO05D008626 1.2e-26 123.2 111 58.6
Gohir.A07G197033 Gossypium hirsutum HOM05D006940 ORTHO05D008626 2.7e-26 122.1 114 59.6
Gorai.001G228900 Gossypium raimondii HOM05D006940 ORTHO05D008626 2.7e-26 122.1 112 63.4
Cpa.g.sc8.85 Carica papaya HOM05D006940 ORTHO05D008626 6.0e-26 120.9 108 60.2
Lj1g0019270 Lotus japonicus HOM05D006940 ORTHO05D008626 6.0e-26 120.9 115 56.5
Medtr7g052120 Medicago truncatula HOM05D006940 ORTHO05D008626 7.8e-26 120.6 110 60.9
CSS0001884 Camellia sinensis var. sinensis HOM05D006940 ORTHO05D008626 1.0e-25 120.2 107 59.8
Haze_03308 Corylus avellana HOM05D006940 ORTHO05D008626 1.0e-25 120.2 64 81.2
MD10G1153200 Malus domestica HOM05D006940 ORTHO05D008626 1.3e-25 119.8 101 59.4
CARHR218280 Cardamine hirsuta HOM05D006940 ORTHO05D008626 3.0e-25 118.6 103 60.2
Hma1.2p1_0781F.1_g216880 Hydrangea macrophylla HOM05D006940 ORTHO05D008626 3.9e-25 118.2 53 94.3
Lalb_Chr21g0315011 Lupinus albus HOM05D006940 ORTHO05D008626 3.9e-25 118.2 110 57.3
MELO3C021111.2 Cucumis melo HOM05D006940 ORTHO05D008626 5.1e-25 117.9 110 58.2
PSO675G0779 Papaver somniferum HOM05D006940 ORTHO05D008626 5.1e-25 117.9 111 53.2
PGR044G1150 Punica granatum HOM05D006940 ORTHO05D008626 5.1e-25 117.9 110 57.3
COL.COLO4_06154 Corchorus olitorius HOM05D006940 ORTHO05D008626 6.6e-25 117.5 65 81.5
PSO017G0530 Papaver somniferum HOM05D006940 ORTHO05D008626 8.6e-25 117.1 111 54.1
Sabra02G0190300 Salix brachista HOM05D006940 ORTHO05D008626 1.5e-24 116.3 65 81.5
AL9U11560 Arabidopsis lyrata HOM05D006940 ORTHO05D008626 1.9e-24 115.9 107 57.9
Carub.0007s2980 Capsella rubella HOM05D006940 ORTHO05D008626 1.9e-24 115.9 107 57.9
Lalb_Chr03g0041181 Lupinus albus HOM05D006940 ORTHO05D008626 2.5e-24 115.5 105 58.1
Sopen09g020450 Solanum pennellii HOM05D006940 ORTHO05D008626 2.5e-24 115.5 105 57.1
arahy.Tifrunner.gnm1.ann1.ZA5GY6 Arachis hypogaea HOM05D006940 ORTHO05D008626 3.3e-24 115.2 117 53.0
Nitab4.5_0000038g0040 Nicotiana tabacum HOM05D006940 ORTHO05D008626 3.3e-24 115.2 111 56.8
vmacro02811 Vaccinium macrocarpon HOM05D006940 ORTHO05D008626 4.3e-24 114.8 57 84.2
Nitab4.5_0003186g0010 Nicotiana tabacum HOM05D006940 ORTHO05D008626 5.6e-24 114.4 110 55.5
Thhalv10026516m.g Eutrema salsugineum HOM05D006940 ORTHO05D008626 9.5e-24 113.6 52 92.3
Phvul.010G031000 Phaseolus vulgaris HOM05D006940 ORTHO05D008626 9.5e-24 113.6 106 53.8
Sed0013755 Sechium edule HOM05D006940 ORTHO05D008626 9.5e-24 113.6 98 57.1
Sed0027137 Sechium edule HOM05D006940 ORTHO05D008626 9.5e-24 113.6 51 94.1
Migut.D02467 Erythranthe guttata HOM05D006940 ORTHO05D008626 1.2e-23 113.2 115 54.8
Nn1g08072 Nelumbo nucifera HOM05D006940 ORTHO05D008626 1.2e-23 113.2 119 50.4
Rhsim13G0052100 Rhododendron simsii HOM05D006940 ORTHO05D008626 1.2e-23 113.2 118 54.2
AT4G12970 Arabidopsis thaliana HOM05D006940 ORTHO05D008626 2.1e-23 112.5 102 59.8
Solyc08g066610.3 Solanum lycopersicum HOM05D006940 ORTHO05D008626 2.1e-23 112.5 102 54.9
Sopen08g020450 Solanum pennellii HOM05D006940 ORTHO05D008626 2.8e-23 112.1 102 53.9
TPR.G2024 Trifolium pratense HOM05D006940 ORTHO05D008626 2.8e-23 112.1 78 66.7
DCAR_012690 Daucus carota HOM05D000328 ORTHO05D008626 3.6e-23 111.7 52 88.5
MBI07_g41210_MAGBIO Magnolia biondii HOM05D006940 ORTHO05D008626 3.6e-23 111.7 105 56.2
CsaV3_7G026610 Cucumis sativus L. HOM05D006940 ORTHO05D008626 4.7e-23 111.3 98 56.1
Sp7g09835 Schrenkiella parvula HOM05D006940 ORTHO05D008626 6.2e-23 110.9 103 58.3
Aa31sc38G90 Aethionema arabicum HOM05D006940 ORTHO05D008626 1.1e-22 110.2 103 55.3
SalBow7G1139 Salvia bowleyana HOM05D006940 ORTHO05D008626 1.1e-22 110.2 55 85.5
MSTRG.20995 Avicennia marina HOM05D006940 ORTHO05D008626 1.4e-22 109.8 113 56.6
Psat0s4060g0200 Pisum sativum HOM05D006940 ORTHO05D008626 1.8e-22 109.4 109 56.0
SalBow6G3514 Salvia bowleyana HOM05D006940 ORTHO05D008626 2.4e-22 109.0 57 78.9
PGSC0003DMG400007740 Solanum tuberosum HOM05D006940 ORTHO05D008626 2.4e-22 109.0 106 56.6
VMungo0331G0069 Vigna mungo HOM05D006940 ORTHO05D008626 2.4e-22 109.0 106 54.7
Nn7g37664 Nelumbo nucifera HOM05D006940 ORTHO05D008626 3.1e-22 108.6 53 83.0
BcaB04g17733 Brassica carinata HOM05D006940 ORTHO05D008626 6.8e-22 107.5 107 55.1
TAR636G0441 Trochodendron aralioides HOM05D006940 ORTHO05D008626 6.8e-22 107.5 86 58.1
A08p07220 Brassica napus HOM05D006940 ORTHO05D008626 8.9e-22 107.1 107 54.2
C08p08940 Brassica napus HOM05D006940 ORTHO05D008626 8.9e-22 107.1 107 54.2
BolC8t47738H Brassica oleracea HOM05D006940 ORTHO05D008626 8.9e-22 107.1 107 54.2
BraA08t32735Z Brassica rapa HOM05D006940 ORTHO05D008626 8.9e-22 107.1 107 54.2
Os01g0914400 Oryza sativa ssp. japonica HOM05D006940 ORTHO05D008626 8.9e-22 107.1 110 50.0
CANSAT01G0416 Cannabis sativa HOM05D006940 ORTHO05D008626 1.2e-21 106.7 110 50.0
CANSAT01G0831 Cannabis sativa HOM05D006940 ORTHO05D008626 1.2e-21 106.7 110 50.0
CANSAT01G1056 Cannabis sativa HOM05D006940 ORTHO05D008626 1.2e-21 106.7 110 50.0
MSTRG.18810 Avicennia marina HOM05D006940 ORTHO05D008626 2.0e-21 105.9 102 53.9
HanXRQChr08g0231211 Helianthus annuus HOM05D006940 ORTHO05D008626 2.0e-21 105.9 98 55.1
Oeu064661.1 Olea europaea HOM05D006940 ORTHO05D008626 2.0e-21 105.9 105 54.3
GSVIVG01031691001 Vitis vinifera HOM05D006940 ORTHO05D008626 2.0e-21 105.9 47 89.4
arahy.Tifrunner.gnm1.ann1.7YS827 Arachis hypogaea HOM05D006940 ORTHO05D008626 9.9e-21 103.6 107 56.1
Sc01g0005680 Simmondsia chinensis HOM05D006940 ORTHO05D008626 1.7e-20 102.8 111 51.4
EL10Ac5g11605 Beta vulgaris HOM05D006940 ORTHO05D008626 2.2e-20 102.4 104 49.0
THA.LOC104818992 Tarenaya hassleriana HOM05D006940 ORTHO05D008626 2.9e-20 102.1 110 50.0
Lsat_1_v5_gn_9_16040 Lactuca sativa HOM05D006940 ORTHO05D008626 4.9e-20 101.3 50 84.0
Lsat_1_v5_gn_8_97920 Lactuca sativa HOM05D006940 ORTHO05D008626 6.4e-20 100.9 52 78.8
MSTRG.12756 Avicennia marina HOM05D006940 ORTHO05D008626 1.4e-19 99.8 102 51.0
Zm00001eb143570 Zea mays HOM05D006940 ORTHO05D008626 1.9e-19 99.4 51 78.4
Zm00001eb364920 Zea mays HOM05D006940 ORTHO05D008626 2.4e-19 99.0 112 47.3
ATR0609G114 Amborella trichopoda HOM05D006940 ORTHO05D008626 9.2e-19 97.1 50 82.0
HanXRQChr16g0507861 Helianthus annuus HOM05D006940 ORTHO05D008626 7.8e-18 94.0 58 69.0
PGSC0003DMG400020111 Solanum tuberosum HOM05D006940 ORTHO05D008626 7.8e-18 94.0 70 65.7
AUR62042875 Chenopodium quinoa HOM05D006940 ORTHO05D008626 3.9e-17 91.7 103 43.7
SEGI_36325 Sequoiadendron giganteum HOM05D006940 ORTHO05D008626 6.6e-17 90.9 51 74.5
HPP92_011792 Vanilla planifolia HOM05D006940 ORTHO05D008626 9.6e-16 87.0 105 47.6
Zm00001eb174960 Zea mays HOM05D006940 ORTHO05D008626 1.1e-14 83.6 49 63.3
SMO351G0191 Selaginella moellendorffii HOM05D006940 ORTHO05D008626 4.0e-14 81.6 49 67.3


User provided reference genes

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