Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G052100 Manihot esculenta HOM05D006091 ORTHO05D006421 0.0e+00 1824.7 943 100.0
Potri.002G249400 Populus trichocarpa HOM05D006091 ORTHO05D006421 0.0e+00 1352.0 916 77.7
QL09p045696 Quercus lobata HOM05D006091 ORTHO05D006421 0.0e+00 1282.7 914 74.1
Thecc.01G213100 Theobroma cacao HOM05D006091 ORTHO05D006421 0.0e+00 1276.9 915 73.1
Atru.chr6.1598 Acer truncatum HOM05D006091 ORTHO05D006421 0.0e+00 1275.0 918 74.0
COL.COLO4_04501 Corchorus olitorius HOM05D006091 ORTHO05D006421 0.0e+00 1262.3 935 71.9
Dinv12805 Davidia involucrata HOM05D006091 ORTHO05D006421 0.0e+00 1248.8 915 71.4
TWI75G0482 Tripterygium wilfordii HOM05D006091 ORTHO05D006421 0.0e+00 1248.4 915 71.0
Ciclev10030603m.g Citrus clementina HOM05D006091 ORTHO05D006421 0.0e+00 1227.2 917 72.6
Gohir.A11G141600 Gossypium hirsutum HOM05D006091 ORTHO05D006421 0.0e+00 1214.5 918 70.6
Gorai.007G158500 Gossypium raimondii HOM05D006091 ORTHO05D006421 0.0e+00 1214.5 918 70.7
CiPaw.13G053400 Carya illinoinensis HOM05D006091 ORTHO05D006421 0.0e+00 1211.8 845 73.3
Gohir.D11G147900 Gossypium hirsutum HOM05D006091 ORTHO05D006421 0.0e+00 1206.8 918 70.3
Gorai.001G102700 Gossypium raimondii HOM05D006091 ORTHO05D006421 0.0e+00 1192.6 915 69.5
Gohir.D07G095400 Gossypium hirsutum HOM05D006091 ORTHO05D006421 0.0e+00 1189.1 915 69.4
RcHm_v2.0_Chr6g0283291 Rosa chinensis HOM05D006091 ORTHO05D006421 0.0e+00 1185.6 916 67.8
MD05G1163900 Malus domestica HOM05D006091 ORTHO05D006421 0.0e+00 1185.2 916 68.8
CSS0012975 Camellia sinensis var. sinensis HOM05D006091 ORTHO05D006421 0.0e+00 1180.6 916 70.0
Actinidia23366 Actinidia chinensis HOM05D006091 ORTHO05D006421 0.0e+00 1176.0 919 68.3
Gohir.A07G090700 Gossypium hirsutum HOM05D006091 ORTHO05D006421 0.0e+00 1175.6 915 68.9
FvH4_2g17990 Fragaria vesca HOM05D006091 ORTHO05D006421 0.0e+00 1172.5 913 67.5
MELO3C021115.2 Cucumis melo HOM05D006091 ORTHO05D006421 0.0e+00 1162.9 914 67.6
CANSAT01G2939 Cannabis sativa HOM05D006091 ORTHO05D006421 0.0e+00 1162.1 922 68.5
Ca_23191_v3 Cicer arietinum L. HOM05D006091 ORTHO05D006421 0.0e+00 1160.6 913 66.8
CiPaw.14G042600 Carya illinoinensis HOM05D006091 ORTHO05D006421 0.0e+00 1151.0 915 67.5
Rhsim13G0051700 Rhododendron simsii HOM05D006091 ORTHO05D006421 0.0e+00 1150.2 909 68.0
Nn1g08059 Nelumbo nucifera HOM05D006091 ORTHO05D006421 0.0e+00 1149.4 945 66.0
CsaV3_7G026640 Cucumis sativus L. HOM05D006091 ORTHO05D006421 0.0e+00 1148.7 914 66.7
FAN24G1597 Fragaria x ananassa HOM05D006091 ORTHO05D006421 0.0e+00 1147.5 913 66.7
arahy.Tifrunner.gnm1.ann1.ZLM6RM Arachis hypogaea HOM05D006091 ORTHO05D006421 0.0e+00 1137.1 914 66.4
Lalb_Chr13g0291021 Lupinus albus HOM05D006091 ORTHO05D006421 0.0e+00 1136.3 913 66.3
Psat0s4060g0040 Pisum sativum HOM05D006091 ORTHO05D006421 0.0e+00 1134.8 913 65.8
Glyma.03G089000 Glycine max HOM05D006091 ORTHO05D006421 0.0e+00 1134.0 913 66.3
FAN27G2037 Fragaria x ananassa HOM05D006091 ORTHO05D006421 0.0e+00 1131.7 935 64.8
Lj2C1118G19 Lonicera japonica HOM05D006091 ORTHO05D006421 0.0e+00 1127.5 942 64.8
PGR083G0226 Punica granatum HOM05D006091 ORTHO05D006421 0.0e+00 1126.7 917 66.6
vmacro02807 Vaccinium macrocarpon HOM05D006091 ORTHO05D006421 0.0e+00 1126.7 935 65.6
Eucgr.H00733 Eucalyptus grandis HOM05D006091 ORTHO05D006421 0.0e+00 1124.4 917 66.6
Medtr8g011610 Medicago truncatula HOM05D006091 ORTHO05D006421 0.0e+00 1117.8 914 65.0
Carub.0003s0694 Capsella rubella HOM05D006091 ORTHO05D006421 0.0e+00 1113.6 917 65.1
PSO017G2440 Papaver somniferum HOM05D006091 ORTHO05D006421 0.0e+00 1112.4 913 64.7
FAN15G2626 Fragaria x ananassa HOM05D006091 ORTHO05D006421 0.0e+00 1110.9 935 64.4
BraA05t22809Z Brassica rapa HOM05D006091 ORTHO05D006421 0.0e+00 1110.5 916 64.6
Aa31LG5G17970 Aethionema arabicum HOM05D006091 ORTHO05D006421 0.0e+00 1110.1 914 64.1
Cpa.g.sc8.88 Carica papaya HOM05D006091 ORTHO05D006421 0.0e+00 1110.1 994 62.6
THA.LOC104802652 Tarenaya hassleriana HOM05D006091 ORTHO05D006421 0.0e+00 1109.7 915 65.7
Oeu003643.1 Olea europaea HOM05D006091 ORTHO05D006421 0.0e+00 1109.0 938 64.0
AL3G18700 Arabidopsis lyrata HOM05D006091 ORTHO05D006421 0.0e+00 1107.0 917 65.2
BolC5t34643H Brassica oleracea HOM05D006091 ORTHO05D006421 0.0e+00 1104.7 915 64.0
A05p40780 Brassica napus HOM05D006091 ORTHO05D006421 0.0e+00 1104.4 916 64.3
PSO675G5723 Papaver somniferum HOM05D006091 ORTHO05D006421 0.0e+00 1102.8 911 64.3
Sp3g06320 Schrenkiella parvula HOM05D006091 ORTHO05D006421 0.0e+00 1101.3 919 64.6
Sc05g0001800 Simmondsia chinensis HOM05D006091 ORTHO05D006421 0.0e+00 1101.3 846 66.1
Aqoxy2G03964 Aquilegia oxysepala HOM05D006091 ORTHO05D006421 0.0e+00 1100.1 911 65.5
arahy.Tifrunner.gnm1.ann1.23KP9R Arachis hypogaea HOM05D006091 ORTHO05D006421 0.0e+00 1097.0 914 65.2
AT3G07400 Arabidopsis thaliana HOM05D006091 ORTHO05D006421 0.0e+00 1094.7 917 64.6
Cc01_g16310 Coffea canephora HOM05D006091 ORTHO05D006421 0.0e+00 1091.6 916 63.5
MSTRG.17976 Avicennia marina HOM05D006091 ORTHO05D006421 0.0e+00 1090.1 916 63.0
C05p59890 Brassica napus HOM05D006091 ORTHO05D006421 0.0e+00 1089.3 915 63.7
Migut.N00655 Erythranthe guttata HOM05D006091 ORTHO05D006421 0.0e+00 1088.2 916 63.4
Sed0015233 Sechium edule HOM05D006091 ORTHO05D006421 0.0e+00 1087.4 916 63.2
Sopen09g020500 Solanum pennellii HOM05D006091 ORTHO05D006421 0.0e+00 1086.6 916 63.2
DCAR_004762 Daucus carota HOM05D006091 ORTHO05D006421 0.0e+00 1082.0 929 62.0
ECA236G3389 Erigeron canadensis HOM05D006091 ORTHO05D006421 0.0e+00 1080.1 916 62.7
Glyma.16G084200 Glycine max HOM05D006091 ORTHO05D006421 3.2e-311 1071.6 873 65.5
HanXRQChr04g0107951 Helianthus annuus HOM05D006091 ORTHO05D006421 2.2e-310 1068.9 916 62.6
Lj3g0004892 Lotus japonicus HOM05D006091 ORTHO05D006421 2.8e-310 1068.5 913 64.2
Nitab4.5_0000038g0010 Nicotiana tabacum HOM05D006091 ORTHO05D006421 4.9e-310 1067.8 918 63.3
MD10G1153600 Malus domestica HOM05D006091 ORTHO05D006421 3.5e-308 1061.6 932 63.0
SGA_v2.0_scaffold77G25288 Striga asiatica HOM05D006091 ORTHO05D006421 4.3e-306 1054.7 912 62.7
Solyc09g056350.4 Solanum lycopersicum HOM05D006091 ORTHO05D006421 9.5e-306 1053.5 916 62.0
AUR62001194 Chenopodium quinoa HOM05D006091 ORTHO05D006421 6.8e-304 1047.3 918 61.5
Thhalv10019992m.g Eutrema salsugineum HOM05D006091 ORTHO05D006421 1.5e-303 1046.2 915 62.6
Lsat_1_v5_gn_8_88561 Lactuca sativa HOM05D006091 ORTHO05D006421 1.3e-302 1043.1 918 61.8
Hund18485 Selenicereus undatus HOM05D006091 ORTHO05D006421 3.7e-302 1041.6 948 60.2
AUR62022134 Chenopodium quinoa HOM05D006091 ORTHO05D006421 4.1e-301 1038.1 922 61.6
Peaxi162Scf00054g00172 Petunia axillaris HOM05D006091 ORTHO05D006421 1.4e-296 1023.1 892 61.7
Nitab4.5_0009574g0010 Nicotiana tabacum HOM05D006091 ORTHO05D006421 6.9e-288 994.2 1148 50.3
Phvul.010G030600 Phaseolus vulgaris HOM05D006091 ORTHO05D006421 4.2e-285 984.9 802 65.2
ATR0609G072 Amborella trichopoda HOM05D006091 ORTHO05D006421 3.8e-270 935.3 917 58.7
Zm00001eb202960 Zea mays HOM05D006091 ORTHO05D006421 3.8e-262 908.7 918 56.5
TPR.G1980 Trifolium pratense HOM05D006091 ORTHO05D006421 4.8e-257 891.7 699 66.7
HPP92_009934 Vanilla planifolia HOM05D006091 ORTHO05D006421 3.8e-254 882.1 908 55.8
Ah.08g218720 Amaranthus hybridus HOM05D006091 ORTHO05D006421 2.4e-248 862.8 897 55.5
unitig_699.g19751 Utricularia gibba HOM05D006091 ORTHO05D006421 2.0e-234 816.6 891 52.1
CAN.G99.2 Capsicum annuum HOM05D006091 ORTHO05D006421 1.0e-227 794.3 684 60.4
SEGI_05193 Sequoiadendron giganteum HOM05D006091 ORTHO05D006421 2.3e-219 766.5 938 47.8
Prupe.8G192400 Prunus persica HOM05D006091 ORTHO05D006421 8.9e-211 738.0 855 50.6
Haze_03314 Corylus avellana HOM05D006091 ORTHO05D006421 7.3e-205 718.4 514 74.1
SMO117G0101 Selaginella moellendorffii HOM05D006091 ORTHO05D006421 1.9e-200 703.7 914 47.5
Mapoly0057s0040 Marchantia polymorpha HOM05D006091 ORTHO05D006421 3.0e-198 696.4 950 44.8
TAR362G0288 Trochodendron aralioides HOM05D006091 ORTHO05D006421 3.5e-191 672.9 511 70.1
Pp3c23_8470 Physcomitrium patens HOM05D006091 ORTHO05D006421 3.3e-189 666.4 929 44.0
ClCG09G008430 Citrullus lanatus HOM05D006091 ORTHO05D006421 3.7e-185 652.9 510 66.7
CARHR082040 Cardamine hirsuta HOM05D006091 ORTHO05D006421 2.5e-181 640.2 526 64.3
Hma1.2p1_0405F.1_g145830 Hydrangea macrophylla HOM05D006091 ORTHO05D006421 1.9e-176 624.0 504 65.1
Hma1.2p1_2126F.1_g314575 Hydrangea macrophylla HOM05D006091 ORTHO05D006421 1.9e-176 624.0 504 65.1
GSVIVG01005280001 Vitis vinifera HOM05D006091 ORTHO05D006421 5.1e-174 615.9 437 70.5
Hma1.2p1_0405F.1_g145840 Hydrangea macrophylla HOM05D006091 ORTHO05D006421 2.1e-172 610.5 497 65.0
Hma1.2p1_2126F.1_g314577 Hydrangea macrophylla HOM05D006091 ORTHO05D006421 2.1e-172 610.5 497 65.0
Haze_03313 Corylus avellana HOM05D006091 ORTHO05D006421 7.6e-154 548.9 407 72.7
GSVIVG01002194001 Vitis vinifera HOM05D006091 ORTHO05D006421 3.9e-150 536.6 421 70.5
Hma1.2p1_2027F.1_g311640 Hydrangea macrophylla HOM05D006091 ORTHO05D006421 3.3e-149 533.5 414 70.0
TAR362G0363 Trochodendron aralioides HOM05D006091 ORTHO05D006421 2.8e-148 530.4 382 72.8
Os02g0481700 Oryza sativa ssp. japonica HOM05D006091 ORTHO05D006421 1.3e-137 495.0 520 53.8
EL10Ac7g17981 Beta vulgaris HOM05D006091 ORTHO05D006421 8.3e-108 396.0 367 58.3
CDE05G1549 Ceratophyllum demersum HOM05D006091 ORTHO05D006421 3.8e-105 387.1 484 47.5
SEGI_30787 Sequoiadendron giganteum HOM05D006091 ORTHO05D006421 1.5e-104 385.2 404 55.0
CBR_g37499 Chara braunii HOM05D006091 ORTHO05D000002 9.9e-53 213.0 383 37.1
SEGI_39275 Sequoiadendron giganteum HOM05D006091 ORTHO05D006421 1.6e-39 169.1 251 43.0
Sp7g12380 Schrenkiella parvula HOM05D002557 ORTHO05D002563 6.5e-36 157.1 125 60.0
BcaC05g29533 Brassica carinata HOM05D006091 ORTHO05D006421 2.5e-27 128.6 126 60.3
Cre06.g275150 Chlamydomonas reinhardtii HOM05D006091 ORTHO05D006421 4.3e-24 117.9 190 37.9
MCO04G344 Micromonas commoda HOM05D006091 ORTHO05D006421 1.4e-17 96.3 112 46.4
CBR_g37496 Chara braunii HOM05D000019 ORTHO05D000048 6.7e-17 94.0 316 26.3
CDE05G0609 Ceratophyllum demersum HOM05D006091 ORTHO05D006421 4.3e-16 91.3 82 65.9
SMO364G0811 Selaginella moellendorffii HOM05D011999 ORTHO05D006421 2.2e-12 79.0 151 36.4
ECA246G1360 Erigeron canadensis HOM05D006091 ORTHO05D006421 3.8e-12 78.2 54 70.4
RcHm_v2.0_Chr6g0283341 Rosa chinensis HOM05D006091 ORTHO05D006421 2.5e-11 75.5 49 77.6
Cc08_g04910 Coffea canephora HOM05D006091 ORTHO05D006421 9.4e-11 73.6 62 58.1
PRCOL_00000494 Prasinoderma coloniale HOM05D006091 ORTHO05D006421 1.2e-10 73.2 188 32.4
Mapoly0081s0074 Marchantia polymorpha HOM05D018154 ORTHO05D015856 3.9e-09 68.2 112 39.3
MBI16_g37173_MAGBIO Magnolia biondii HOM05D006091 ORTHO05D006421 5.1e-09 67.8 47 70.2
BraA05t22811Z Brassica rapa HOM05D000328 ORTHO05D000191 1.1e-08 66.6 67 56.7
SEGI_40198 Sequoiadendron giganteum HOM05D018154 ORTHO05D015856 3.3e-08 65.1 112 35.7
Glyma.06G187200 Glycine max HOM05D000938 ORTHO05D001451 5.7e-08 64.3 111 37.8
HanXRQChr05g0154431 Helianthus annuus HOM05D000938 ORTHO05D001451 7.4e-08 63.9 87 35.6
Pp3c7_7930 Physcomitrium patens HOM05D018154 ORTHO05D015856 7.4e-08 63.9 112 38.4
AagrBONN_evm.TU.Sc2ySwM_117.1853 Anthoceros agrestis HOM05D018154 ORTHO05D015856 1.7e-07 62.8 112 38.4
SEGI_02757 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 1.7e-07 62.8 114 36.8
AUR62040616 Chenopodium quinoa HOM05D006091 ORTHO05D006421 2.2e-07 62.4 54 64.8
VMungo1309G1144 Vigna mungo HOM05D000938 ORTHO05D001451 2.2e-07 62.4 109 38.5
SMO118G0542 Selaginella moellendorffii HOM05D000938 ORTHO05D001451 2.8e-07 62.0 80 38.8
Pp3c11_21990 Physcomitrium patens HOM05D018154 ORTHO05D015856 3.7e-07 61.6 112 35.7
Pp3c11_21996 Physcomitrium patens HOM05D018154 ORTHO05D015856 3.7e-07 61.6 112 35.7
SMO263G0014 Selaginella moellendorffii HOM05D000938 ORTHO05D001451 3.7e-07 61.6 78 38.5
SEGI_01095 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 3.7e-07 61.6 129 33.3
TWI39G0860 Tripterygium wilfordii HOM05D000938 ORTHO05D001451 3.7e-07 61.6 89 38.2
Lj5A120T55 Lonicera japonica HOM05D000938 ORTHO05D001451 4.8e-07 61.2 150 28.7
SEGI_20099 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 4.8e-07 61.2 129 33.3
Dinv12778 Davidia involucrata HOM05D000938 ORTHO05D001451 6.3e-07 60.8 86 38.4
HanXRQChr05g0151531 Helianthus annuus HOM05D000938 ORTHO05D001451 6.3e-07 60.8 87 39.1
CBR_g54770 Chara braunii HOM05D006091 ORTHO05D006421 8.2e-07 60.5 113 40.7
SEGI_35292 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 8.2e-07 60.5 88 38.6
arahy.Tifrunner.gnm1.ann1.R5RNX8 Arachis hypogaea HOM05D000938 ORTHO05D001451 1.4e-06 59.7 100 35.0
arahy.Tifrunner.gnm1.ann1.XF1RPZ Arachis hypogaea HOM05D000938 ORTHO05D001451 1.4e-06 59.7 100 35.0
EL10Ac4g09634 Beta vulgaris HOM05D000938 ORTHO05D001451 1.4e-06 59.7 138 31.2
Haze_07425 Corylus avellana HOM05D000938 ORTHO05D001451 1.4e-06 59.7 83 37.3
Lalb_Chr08g0236121 Lupinus albus HOM05D000938 ORTHO05D001451 1.4e-06 59.7 121 32.2
Nn5g28429 Nelumbo nucifera HOM05D000938 ORTHO05D001451 1.4e-06 59.7 150 30.7
SalBow7G0977 Salvia bowleyana HOM05D000938 ORTHO05D001451 1.4e-06 59.7 86 37.2
SEGI_27768 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 1.4e-06 59.7 120 35.0
SEGI_35196 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 1.4e-06 59.7 120 35.0
PSO478G3557 Papaver somniferum HOM05D003218 ORTHO05D003702 1.8e-06 59.3 37 70.3
SMO118G0083 Selaginella moellendorffii HOM05D018154 ORTHO05D015856 1.8e-06 59.3 112 35.7
SEGI_41501 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 1.8e-06 59.3 113 37.2
TPR.G14289 Trifolium pratense HOM05D000938 ORTHO05D001451 1.8e-06 59.3 87 39.1
arahy.Tifrunner.gnm1.ann1.A2IS88 Arachis hypogaea HOM05D000938 ORTHO05D001451 2.4e-06 58.9 171 29.2
ECA246G4314 Erigeron canadensis HOM05D000938 ORTHO05D001451 2.4e-06 58.9 142 28.9
Hund07231 Selenicereus undatus HOM05D000938 ORTHO05D001451 2.4e-06 58.9 178 28.1
SEGI_33350 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 2.4e-06 58.9 89 39.3
SEGI_39989 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 2.4e-06 58.9 104 35.6
AagrBONN_evm.TU.Sc2ySwM_344.2493 Anthoceros agrestis HOM05D041500 ORTHO05D015856 3.1e-06 58.5 108 35.2
SEGI_22398 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 3.1e-06 58.5 120 35.0
arahy.Tifrunner.gnm1.ann1.A0TJ2P Arachis hypogaea HOM05D000938 ORTHO05D001451 4.1e-06 58.2 87 35.6
Cfa019057 Carpinus fangiana HOM05D000938 ORTHO05D001451 4.1e-06 58.2 87 36.8
Haze_07424 Corylus avellana HOM05D000938 ORTHO05D001451 4.1e-06 58.2 92 34.8
DCAR_026099 Daucus carota HOM05D000938 ORTHO05D001451 4.1e-06 58.2 85 35.3
SGA_v2.0_scaffold273G46466 Striga asiatica HOM05D000938 ORTHO05D001451 4.1e-06 58.2 82 37.8
Cfa019054 Carpinus fangiana HOM05D000938 ORTHO05D001451 5.3e-06 57.8 92 34.8
Actinidia06582 Actinidia chinensis HOM05D000938 ORTHO05D001451 7.0e-06 57.4 85 34.1
Cfa019056 Carpinus fangiana HOM05D000938 ORTHO05D001451 7.0e-06 57.4 87 35.6
AUR62006871 Chenopodium quinoa HOM05D000938 ORTHO05D001451 7.0e-06 57.4 117 31.6
Migut.H00821 Erythranthe guttata HOM05D000938 ORTHO05D001451 7.0e-06 57.4 96 36.5
Gohir.A12G199900 Gossypium hirsutum HOM05D000938 ORTHO05D001451 7.0e-06 57.4 115 33.0
Medtr3g078633 Medicago truncatula HOM05D000938 ORTHO05D001451 7.0e-06 57.4 107 38.3
DCAR_019991 Daucus carota HOM05D000938 ORTHO05D001451 9.1e-06 57.0 85 37.6
TPR.G37429 Trifolium pratense HOM05D000938 ORTHO05D001451 9.1e-06 57.0 101 32.7


User provided reference genes

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