Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 3.1e-173 611.7 308 100.0
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 3.1e-136 488.8 304 84.9
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 6.4e-126 454.5 310 73.9
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 2.7e-124 449.1 246 86.6
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 6.6e-123 444.5 320 72.5
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 8.6e-123 444.1 244 87.3
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 8.6e-123 444.1 244 87.3
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 1.1e-122 443.7 318 71.4
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 4.3e-122 441.8 285 75.4
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 5.6e-122 441.4 248 85.5
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 9.5e-122 440.7 317 72.9
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 2.1e-121 439.5 317 71.9
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 2.1e-121 439.5 246 85.4
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 2.8e-121 439.1 333 69.1
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.1e-120 437.2 246 86.6
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.1e-120 437.2 246 86.6
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 1.4e-120 436.8 295 73.9
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 1.4e-120 436.8 307 71.7
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 1.8e-120 436.4 242 85.1
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 2.4e-120 436.0 290 76.2
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 2.4e-120 436.0 282 75.9
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 3.1e-120 435.6 244 85.2
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.1e-120 435.6 246 86.2
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 8.9e-120 434.1 306 72.2
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 8.9e-120 434.1 283 76.0
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 1.5e-119 433.3 269 80.3
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 3.4e-119 432.2 305 71.1
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 4.4e-119 431.8 278 77.3
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 4.4e-119 431.8 280 76.4
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 5.8e-119 431.4 295 74.2
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 9.9e-119 430.6 258 81.0
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.3e-118 430.3 279 74.9
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.3e-118 430.3 285 74.0
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 1.7e-118 429.9 321 68.5
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 1.7e-118 429.9 244 83.2
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 2.2e-118 429.5 260 78.5
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 4.9e-118 428.3 257 80.5
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 6.4e-118 427.9 327 68.8
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 8.4e-118 427.6 246 81.3
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 1.4e-117 426.8 255 80.0
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 1.9e-117 426.4 249 80.7
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 2.4e-117 426.0 245 81.2
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 2.4e-117 426.0 247 82.2
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 2.4e-117 426.0 308 71.8
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 2.4e-117 426.0 255 80.0
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 3.2e-117 425.6 307 70.0
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 3.2e-117 425.6 243 82.3
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 3.2e-117 425.6 284 73.2
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 5.4e-117 424.9 269 75.1
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 1.6e-116 423.3 245 81.2
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 2.7e-116 422.5 293 71.3
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 2.7e-116 422.5 242 81.8
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 2.7e-116 422.5 243 83.5
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 4.6e-116 421.8 255 79.2
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 4.6e-116 421.8 250 79.6
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 4.6e-116 421.8 245 81.2
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 7.8e-116 421.0 250 79.6
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 7.8e-116 421.0 317 68.1
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 7.8e-116 421.0 246 82.9
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 7.8e-116 421.0 246 81.7
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 3.0e-115 419.1 279 72.8
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 3.0e-115 419.1 268 74.6
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 6.6e-115 417.9 242 81.4
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 8.7e-115 417.5 243 80.7
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 1.1e-114 417.2 246 80.5
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 7.3e-114 414.5 251 78.1
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 7.3e-114 414.5 257 75.1
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 7.3e-114 414.5 287 70.7
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 7.3e-114 414.5 311 67.8
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 1.6e-113 413.3 333 66.7
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 2.8e-113 412.5 282 72.0
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 1.8e-112 409.8 276 71.4
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 3.1e-112 409.1 243 77.8
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 4.0e-112 408.7 255 74.9
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 5.2e-112 408.3 245 77.6
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 9.0e-112 407.5 407 56.3
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 2.6e-111 406.0 261 75.5
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 3.4e-111 405.6 267 71.9
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 4.4e-111 405.2 255 75.3
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 4.4e-111 405.2 246 75.2
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 5.8e-111 404.8 265 72.5
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 7.6e-111 404.4 318 63.2
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 1.3e-110 403.7 244 75.4
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 6.4e-110 401.4 246 74.8
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 1.9e-109 399.8 248 75.4
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 1.9e-109 399.8 250 77.2
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 3.2e-109 399.1 289 68.5
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 5.4e-109 398.3 245 75.5
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 1.2e-108 397.1 255 73.3
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 2.7e-108 396.0 251 74.5
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 2.7e-108 396.0 242 76.4
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 1.7e-107 393.3 267 71.2
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 1.7e-107 393.3 248 73.8
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 2.0e-103 379.8 271 73.1
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 1.7e-102 376.7 260 71.5
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 3.8e-102 375.6 246 77.2
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 2.4e-101 372.9 275 70.2
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 1.2e-100 370.5 258 70.9
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 1.6e-100 370.2 213 81.7
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 7.9e-100 367.9 453 49.9
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 1.0e-99 367.5 238 73.9
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 8.1e-97 357.8 241 73.0
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 7.6e-95 351.3 255 70.6
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.9e-93 346.7 215 73.0
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 2.4e-93 346.3 251 69.7
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 9.3e-93 344.4 216 78.2
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.8e-91 340.1 309 55.0
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 8.7e-91 337.8 244 63.9
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 1.0e-86 324.3 263 58.2
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.3e-82 309.3 231 68.0
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 5.3e-80 302.0 186 76.3
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 8.5e-78 294.7 167 85.6
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 1.0e-75 287.7 216 63.9
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 1.8e-72 276.9 245 54.7
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 4.5e-71 272.3 179 73.7
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 2.5e-69 266.5 167 74.9
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 5.1e-67 258.8 224 62.1
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 9.7e-66 254.6 237 51.5
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 2.2e-65 253.4 251 53.0
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 1.1e-64 251.1 159 74.8
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 5.3e-64 248.8 145 83.4
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 2.6e-63 246.5 252 56.3
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 4.2e-61 239.2 206 63.1
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 1.6e-60 237.3 191 64.9
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 3.6e-60 236.1 283 42.4
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 8.8e-59 231.5 137 83.9
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 8.2e-57 224.9 137 78.1
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 1.3e-54 217.6 133 76.7
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 2.3e-51 206.8 130 81.5
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 1.3e-49 201.1 238 43.3
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 4.8e-49 199.1 116 78.4
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 1.1e-48 198.0 112 82.1
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.2e-47 194.5 149 60.4
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 3.8e-46 189.5 110 80.9
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 3.8e-46 189.5 100 85.0
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 8.5e-46 188.3 111 77.5
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 1.6e-44 184.1 136 68.4
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 1.6e-44 184.1 136 68.4
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 4.0e-43 179.5 101 78.2
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 7.5e-42 175.3 232 39.7
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.1e-40 171.4 92 88.0
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 5.4e-40 169.1 164 56.7
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 5.9e-39 165.6 80 100.0
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 3.8e-38 162.9 223 39.9
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 3.0e-35 153.3 82 80.5
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 5.2e-35 152.5 213 40.4
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 6.8e-35 152.1 99 65.7
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 1.7e-33 147.5 75 86.7
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 2.8e-33 146.7 76 90.8
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 2.1e-28 130.6 67 88.1
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 2.1e-28 130.6 75 72.0
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 1.1e-24 118.2 134 48.5
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 4.1e-24 116.3 63 85.7
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 5.4e-24 115.9 56 89.3
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 9.2e-24 115.2 246 30.9
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 5.0e-22 109.4 82 63.4
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 4.4e-18 96.3 59 72.9
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 5.8e-18 95.9 99 51.5
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 3.7e-17 93.2 115 50.4
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 3.5e-15 86.7 48 77.1
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 6.0e-15 85.9 114 42.1
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 6.6e-14 82.4 59 57.6
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 7.5e-10 68.9 102 37.3
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 3.5e-07 60.1 45 60.0


User provided reference genes

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