Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G048301 Manihot esculenta HOM05D006684 ORTHO05D008443 1.5e-76 290.0 217 100.0
Manes.12G053501 Manihot esculenta HOM05D006684 ORTHO05D008443 1.5e-73 280.0 217 98.2
Manes.12G048300 Manihot esculenta HOM05D006684 ORTHO05D008443 9.8e-73 277.3 221 77.4
Manes.05G043400 Manihot esculenta HOM05D006684 ORTHO05D008443 7.3e-68 261.2 239 66.9
Cpa.g.sc18.149 Carica papaya HOM05D006684 ORTHO05D008443 1.3e-40 170.6 229 47.2
COL.COLO4_12585 Corchorus olitorius HOM05D006684 ORTHO05D008443 2.1e-38 163.3 214 47.7
Ciclev10022036m.g Citrus clementina HOM05D006684 ORTHO05D008443 1.1e-36 157.5 233 45.5
Cfa010232 Carpinus fangiana HOM05D006684 ORTHO05D008443 1.9e-36 156.8 237 47.3
TWI59G0969 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 1.9e-36 156.8 236 42.8
GSVIVG01027546001 Vitis vinifera HOM05D006684 ORTHO05D008443 1.3e-35 154.1 247 42.1
CiPaw.01G260000 Carya illinoinensis HOM05D006684 ORTHO05D008443 6.2e-35 151.8 233 43.3
CSS0020305 Camellia sinensis var. sinensis HOM05D006684 ORTHO05D008443 8.1e-35 151.4 237 41.4
Prupe.2G148900 Prunus persica HOM05D006684 ORTHO05D008443 8.1e-35 151.4 233 43.3
TAR636G0929 Trochodendron aralioides HOM05D006684 ORTHO05D008443 1.1e-34 151.0 236 41.1
Sed0022399 Sechium edule HOM05D006684 ORTHO05D008443 4.0e-34 149.1 233 39.9
MELO3C022508.2 Cucumis melo HOM05D006684 ORTHO05D008443 5.3e-34 148.7 233 40.3
Thecc.01G373000 Theobroma cacao HOM05D006684 ORTHO05D008443 9.0e-34 147.9 231 47.6
Atru.chr5.338 Acer truncatum HOM05D006684 ORTHO05D008443 2.6e-33 146.4 233 41.6
QL08p051764 Quercus lobata HOM05D006684 ORTHO05D008443 2.6e-33 146.4 234 49.1
CsaV3_6G006090 Cucumis sativus L. HOM05D006684 ORTHO05D008443 1.0e-32 144.4 233 47.6
Nn6g34351 Nelumbo nucifera HOM05D006684 ORTHO05D008443 1.0e-32 144.4 240 42.1
THA.LOC104801995 Tarenaya hassleriana HOM05D006684 ORTHO05D008443 4.9e-32 142.1 233 41.6
Gohir.A11G082800 Gossypium hirsutum HOM05D006684 ORTHO05D008443 6.5e-32 141.7 234 40.6
Dinv32395 Davidia involucrata HOM05D006684 ORTHO05D008443 8.4e-32 141.4 235 40.4
Gohir.D11G086900 Gossypium hirsutum HOM05D006684 ORTHO05D008443 1.1e-31 141.0 242 40.1
Nitab4.5_0010110g0010 Nicotiana tabacum HOM05D006684 ORTHO05D008443 1.4e-31 140.6 229 40.2
Gorai.007G092800 Gossypium raimondii HOM05D006684 ORTHO05D008443 1.9e-31 140.2 242 39.7
arahy.Tifrunner.gnm1.ann1.3Z62KU Arachis hypogaea HOM05D006684 ORTHO05D008443 7.1e-31 138.3 231 39.8
Hund17005 Selenicereus undatus HOM05D006684 ORTHO05D008443 9.3e-31 137.9 240 49.2
Sopen05g028070 Solanum pennellii HOM05D006684 ORTHO05D008443 9.3e-31 137.9 235 38.7
arahy.Tifrunner.gnm1.ann1.CFQ18P Arachis hypogaea HOM05D006684 ORTHO05D008443 1.6e-30 137.1 231 40.3
BcaC02g07085 Brassica carinata HOM05D006684 ORTHO05D008443 1.6e-30 137.1 237 49.8
PGR042G1390 Punica granatum HOM05D006684 ORTHO05D008443 1.6e-30 137.1 236 37.7
Sp4g27550 Schrenkiella parvula HOM05D006684 ORTHO05D008443 1.6e-30 137.1 234 39.7
Lalb_Chr03g0039091 Lupinus albus HOM05D006684 ORTHO05D008443 2.1e-30 136.7 230 45.7
Phvul.008G074700 Phaseolus vulgaris HOM05D006684 ORTHO05D008443 2.1e-30 136.7 230 41.7
Thhalv10001611m.g Eutrema salsugineum HOM05D006684 ORTHO05D008443 2.7e-30 136.3 233 48.1
PGSC0003DMG400021635 Solanum tuberosum HOM05D006684 ORTHO05D008443 2.7e-30 136.3 235 39.1
VMungo1383G3715 Vigna mungo HOM05D006684 ORTHO05D008443 2.7e-30 136.3 231 39.8
Glyma.09G267200 Glycine max HOM05D006684 ORTHO05D008443 3.5e-30 136.0 231 40.7
LjContig00136g0018410 Lotus japonicus HOM05D006684 ORTHO05D008443 7.9e-30 134.8 214 40.7
CDE04G1869 Ceratophyllum demersum HOM05D006684 ORTHO05D008443 1.3e-29 134.0 236 37.7
C04p71620 Brassica napus HOM05D000147 ORTHO05D007841 2.3e-29 133.3 241 40.2
CANSAT94G0012 Cannabis sativa HOM05D006684 ORTHO05D008443 3.9e-29 132.5 232 44.0
Duzib133G0994 Durio zibethinus HOM05D006684 ORTHO05D008443 5.1e-29 132.1 214 42.1
BcaB06g29418 Brassica carinata HOM05D006684 ORTHO05D008443 8.7e-29 131.3 235 47.2
BraA04t18849Z Brassica rapa HOM05D000147 ORTHO05D007841 8.7e-29 131.3 232 47.0
MD02G1199700 Malus domestica HOM05D006684 ORTHO05D008443 1.5e-28 130.6 233 44.6
Aqoxy7G00540 Aquilegia oxysepala HOM05D006684 ORTHO05D008443 3.3e-28 129.4 237 40.9
BolC4t28667H Brassica oleracea HOM05D000147 ORTHO05D007841 4.3e-28 129.0 232 47.4
FvH4_7g12340 Fragaria vesca HOM05D006684 ORTHO05D008443 4.3e-28 129.0 232 41.4
FAN06G2821 Fragaria x ananassa HOM05D006684 ORTHO05D008443 4.3e-28 129.0 232 41.4
FAN06G3889 Fragaria x ananassa HOM05D006684 ORTHO05D008443 4.3e-28 129.0 232 41.4
Cc02_g36430 Coffea canephora HOM05D006684 ORTHO05D008443 5.7e-28 128.6 231 36.8
Aa31LG1G27020 Aethionema arabicum HOM05D006684 ORTHO05D008443 7.4e-28 128.3 233 43.3
RcHm_v2.0_Chr1g0351131 Rosa chinensis HOM05D006684 ORTHO05D008443 7.4e-28 128.3 232 38.8
TPR.G37765 Trifolium pratense HOM05D006684 ORTHO05D008443 9.6e-28 127.9 208 43.3
FAN10G0264 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.3e-27 127.5 232 46.1
FAN10G2097 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.3e-27 127.5 232 55.6
MSTRG.4882 Avicennia marina HOM05D006684 ORTHO05D008443 2.1e-27 126.7 238 39.9
Nitab4.5_0001702g0200 Nicotiana tabacum HOM05D006684 ORTHO05D008443 2.1e-27 126.7 220 58.6
Carub.0004s2814 Capsella rubella HOM05D006684 ORTHO05D008443 2.8e-27 126.3 212 49.5
CARHR140710 Cardamine hirsuta HOM05D006684 ORTHO05D008443 2.8e-27 126.3 235 45.1
FAN01G2432 Fragaria x ananassa HOM05D006684 ORTHO05D008443 2.8e-27 126.3 232 40.5
AL4G44700 Arabidopsis lyrata HOM05D006684 ORTHO05D008443 1.1e-26 124.4 212 40.6
Medtr7g075640 Medicago truncatula HOM05D006684 ORTHO05D008443 1.4e-26 124.0 208 42.8
ClCG06G000300 Citrullus lanatus HOM05D006684 ORTHO05D008443 1.8e-26 123.6 276 38.0
AT2G45520 Arabidopsis thaliana HOM05D006684 ORTHO05D008443 2.4e-26 123.2 212 46.7
SGA_v2.0_scaffold11G05605 Striga asiatica HOM05D006684 ORTHO05D008443 3.1e-26 122.9 230 47.8
Potri.014G072400 Populus trichocarpa HOM05D006684 ORTHO05D008443 4.1e-26 122.5 229 41.9
EL10Ac1g00926 Beta vulgaris HOM05D006684 ORTHO05D008443 1.2e-25 120.9 234 36.3
SalBow5G5079 Salvia bowleyana HOM05D006684 ORTHO05D008443 1.2e-25 120.9 225 40.0
FAN03G1779 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.5e-25 120.6 242 42.6
ECA240G0119 Erigeron canadensis HOM05D006684 ORTHO05D008443 2.0e-25 120.2 237 40.1
Lsat_1_v5_gn_3_135520 Lactuca sativa HOM05D006684 ORTHO05D008443 4.5e-25 119.0 235 39.1
SalBow5G0966 Salvia bowleyana HOM05D006684 ORTHO05D008443 4.5e-25 119.0 225 39.6
HanXRQChr03g0093671 Helianthus annuus HOM05D006684 ORTHO05D008443 5.9e-25 118.6 235 39.6
A04p33890 Brassica napus HOM05D000147 ORTHO05D007841 1.3e-24 117.5 240 44.2
Os06g0129800 Oryza sativa ssp. japonica HOM05D006684 ORTHO05D008443 2.5e-23 113.2 237 34.6
Eucgr.E01357 Eucalyptus grandis HOM05D006684 ORTHO05D008443 1.2e-22 110.9 235 36.2
CAN.G333.1 Capsicum annuum HOM05D006684 ORTHO05D008443 2.7e-22 109.8 236 48.7
Peaxi162Scf00207g00165 Petunia axillaris HOM05D006684 ORTHO05D008443 2.7e-22 109.8 228 40.4
AUR62004244 Chenopodium quinoa HOM05D006684 ORTHO05D008443 4.6e-22 109.0 209 37.8
BolC4t22271H Brassica oleracea HOM05D006684 ORTHO05D008443 2.3e-21 106.7 234 34.6
Zm00001eb378390 Zea mays HOM05D006684 ORTHO05D008443 3.9e-21 105.9 233 34.3
Hma1.2p1_0053F.1_g030880 Hydrangea macrophylla HOM05D006684 ORTHO05D008443 5.1e-21 105.5 244 39.3
PSO478G1842 Papaver somniferum HOM05D006684 ORTHO05D008443 8.7e-21 104.8 247 43.7
Haze_16739 Corylus avellana HOM05D006684 ORTHO05D008443 1.3e-19 100.9 73 67.1
Duzib138G0092 Durio zibethinus HOM05D006684 ORTHO05D008443 4.8e-19 99.0 111 51.4
Oeu036610.1 Olea europaea HOM05D006684 ORTHO05D008443 3.1e-18 96.3 85 51.8
Solyc05g048750.3 Solanum lycopersicum HOM05D006684 ORTHO05D008443 3.1e-18 96.3 113 48.7
TWI23G1019 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 3.1e-18 96.3 110 49.1
Migut.N01586 Erythranthe guttata HOM05D006684 ORTHO05D008443 3.4e-17 92.8 69 63.8
Sc02g0002410 Simmondsia chinensis HOM05D006684 ORTHO05D008443 3.4e-17 92.8 113 43.4
AUR62013604 Chenopodium quinoa HOM05D006684 ORTHO05D008443 1.7e-16 90.5 223 34.1
Ca_07836_v3 Cicer arietinum L. HOM05D006684 ORTHO05D008443 1.7e-16 90.5 76 57.9
Psat3g104080 Pisum sativum HOM05D006684 ORTHO05D008443 1.7e-16 90.5 77 62.3
unitig_578.g16483 Utricularia gibba HOM05D006684 ORTHO05D008443 6.5e-16 88.6 74 56.8
BraA05t19524Z Brassica rapa HOM05D006684 ORTHO05D008443 1.4e-15 87.4 226 31.9
Rhsim01G0161500 Rhododendron simsii HOM05D006684 ORTHO05D008443 1.4e-15 87.4 79 54.4
Ah.07g198740 Amaranthus hybridus HOM05D006684 ORTHO05D008443 2.5e-15 86.7 193 33.2
Duzib138G0657 Durio zibethinus HOM05D006684 ORTHO05D008443 4.2e-15 85.9 139 41.0
vmacro20994 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 4.2e-15 85.9 350 25.4
Actinidia33456 Actinidia chinensis HOM05D006684 ORTHO05D008443 5.5e-15 85.5 47 83.0
PSO782G3084 Papaver somniferum HOM05D006684 ORTHO05D008443 7.2e-15 85.1 78 57.7
vmacro20995 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 1.6e-14 84.0 85 55.3
ATR0757G101 Amborella trichopoda HOM05D006684 ORTHO05D008443 2.7e-14 83.2 71 57.7
Haze_16738 Corylus avellana HOM05D006684 ORTHO05D008443 3.6e-14 82.8 59 72.9
SEGI_35511 Sequoiadendron giganteum HOM05D006684 ORTHO05D008443 4.6e-14 82.4 236 33.9
C04p06480 Brassica napus HOM05D000921 ORTHO05D002852 2.0e-12 77.0 112 42.9
Zm00001eb269540 Zea mays HOM05D006684 ORTHO05D008443 2.2e-11 73.6 83 51.8
MBI12_g38018_MAGBIO Magnolia biondii HOM05D006684 ORTHO05D008443 3.7e-11 72.8 61 60.7
SGA_v2.0_scaffold43G16466 Striga asiatica HOM05D006684 ORTHO05D008443 7.7e-09 65.1 67 44.8
Pp3c22_10350 Physcomitrium patens HOM05D006684 ORTHO05D008443 1.7e-08 63.9 232 28.0
SMO347G0023 Selaginella moellendorffii HOM05D006684 ORTHO05D008443 2.9e-08 63.2 206 28.2
Mapoly0084s0081 Marchantia polymorpha HOM05D006684 ORTHO05D008443 1.4e-07 60.8 66 50.0


User provided reference genes

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