Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 7.5e-98 360.5 183 100.0
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 2.0e-95 352.4 183 98.4
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 3.2e-93 345.1 183 97.3
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 3.0e-91 338.6 179 97.2
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 4.8e-89 331.3 181 93.9
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 4.8e-89 331.3 181 93.9
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 4.1e-88 328.2 181 92.8
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 9.1e-88 327.0 181 93.4
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 9.1e-88 327.0 181 93.4
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 2.0e-87 325.9 181 92.8
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 2.0e-87 325.9 181 92.8
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 5.6e-61 238.0 182 70.9
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 2.8e-52 209.1 186 66.7
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 4.7e-52 208.4 191 64.4
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 1.8e-51 206.5 192 65.1
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 1.2e-47 193.7 187 62.0
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 7.8e-47 191.0 198 58.6
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 1.0e-46 190.7 186 61.8
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 1.7e-46 189.9 194 58.8
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 3.3e-45 185.7 181 59.7
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 4.7e-44 181.8 183 59.6
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 1.4e-43 180.3 195 56.4
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 2.0e-42 176.4 186 58.1
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 3.4e-42 175.6 196 54.1
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 7.6e-42 174.5 205 53.7
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 6.4e-41 171.4 197 55.8
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 1.1e-40 170.6 193 55.4
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.1e-40 170.6 190 54.2
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 5.4e-40 168.3 198 54.5
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 7.1e-40 167.9 191 56.5
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 1.2e-39 167.2 191 53.9
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.0e-38 164.1 190 53.2
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 5.1e-38 161.8 203 48.3
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 1.1e-37 160.6 194 50.5
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 1.5e-37 160.2 207 47.8
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 1.9e-37 159.8 195 51.8
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 9.6e-37 157.5 184 54.3
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 9.6e-37 157.5 184 54.3
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 9.6e-37 157.5 184 54.3
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.8e-35 153.3 172 52.3
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 3.1e-35 152.5 200 52.5
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 4.0e-35 152.1 184 50.5
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 2.0e-34 149.8 197 47.7
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 3.4e-34 149.1 200 48.0
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 5.8e-34 148.3 202 45.5
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.3e-33 147.1 195 48.2
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 2.2e-33 146.4 189 49.7
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 3.8e-33 145.6 186 46.2
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 4.9e-33 145.2 206 47.1
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 8.4e-33 144.4 184 51.6
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 8.4e-33 144.4 184 51.6
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 5.4e-32 141.7 190 46.3
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 3.5e-31 139.0 191 47.6
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 3.5e-31 139.0 185 48.6
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 4.6e-31 138.7 194 46.9
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 6.0e-31 138.3 200 49.0
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 7.9e-31 137.9 187 47.6
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 1.0e-30 137.5 207 44.0
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 3.0e-30 136.0 196 45.9
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 3.9e-30 135.6 206 49.5
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 5.1e-30 135.2 186 48.4
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 6.7e-30 134.8 195 43.6
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 1.1e-29 134.0 198 46.5
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 1.5e-29 133.7 192 49.0
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.9e-29 133.3 199 44.7
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 2.5e-29 132.9 199 44.2
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 3.3e-29 132.5 201 44.3
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 3.3e-29 132.5 185 48.6
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 4.3e-29 132.1 161 50.3
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 7.4e-29 131.3 197 49.7
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 2.1e-28 129.8 196 46.4
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 6.2e-28 128.3 84 81.0
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 6.2e-28 128.3 188 43.6
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 8.1e-28 127.9 242 42.1
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 1.8e-27 126.7 195 48.2
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 1.2e-26 124.0 184 45.7
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 1.5e-26 123.6 198 43.9
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 2.6e-26 122.9 186 46.8
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 4.5e-26 122.1 213 39.4
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 7.6e-26 121.3 198 42.4
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 7.6e-26 121.3 166 47.6
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 9.9e-26 120.9 182 46.2
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 9.9e-26 120.9 185 45.4
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 2.9e-25 119.4 206 41.3
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 2.9e-25 119.4 206 41.3
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 3.8e-25 119.0 212 44.8
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 6.4e-25 118.2 202 45.0
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 8.4e-25 117.9 216 40.7
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 8.4e-25 117.9 216 40.7
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 1.4e-24 117.1 198 43.9
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 1.4e-24 117.1 184 44.0
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 3.2e-24 115.9 200 43.5
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 5.5e-24 115.2 213 40.8
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 9.3e-24 114.4 183 47.0
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 1.2e-23 114.0 185 46.5
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 2.1e-23 113.2 184 42.9
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 2.1e-23 113.2 194 40.7
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 2.1e-23 113.2 199 45.2
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 4.6e-23 112.1 187 43.3
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 4.6e-23 112.1 204 40.7
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 7.9e-23 111.3 215 40.5
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 7.9e-23 111.3 206 39.8
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 1.0e-22 110.9 198 40.9
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 1.0e-22 110.9 202 43.1
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 1.3e-22 110.5 198 40.4
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 1.3e-22 110.5 198 40.4
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 1.8e-22 110.2 230 40.4
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 8.7e-22 107.8 198 39.9
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 8.7e-22 107.8 185 43.8
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 1.1e-21 107.5 187 41.2
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 1.5e-21 107.1 203 43.3
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 1.9e-21 106.7 213 39.9
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 1.9e-21 106.7 190 45.3
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 1.9e-21 106.7 197 43.7
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 2.5e-21 106.3 198 39.9
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 2.5e-21 106.3 198 40.9
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 3.3e-21 105.9 211 38.4
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 4.3e-21 105.5 202 39.6
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 9.6e-21 104.4 200 39.0
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 1.3e-20 104.0 198 39.9
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 1.3e-20 104.0 199 42.2
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 2.8e-20 102.8 203 39.9
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 3.7e-20 102.4 122 54.1
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.4e-19 100.5 207 41.5
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 1.8e-19 100.1 191 41.9
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 9.0e-19 97.8 159 48.4
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 1.5e-18 97.1 183 41.5
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 4.5e-18 95.5 207 38.6
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 5.8e-18 95.1 192 39.1
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 2.2e-17 93.2 70 71.4
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 1.9e-16 90.1 79 64.6
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 2.5e-16 89.7 192 40.1
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 3.2e-16 89.4 70 71.4
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 7.1e-16 88.2 195 39.0
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 9.3e-16 87.8 189 37.0
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 1.6e-15 87.0 196 39.3
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 1.0e-14 84.3 198 35.9
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 1.8e-14 83.6 78 59.0
Nn4g25115 Nelumbo nucifera HOM05D004499 ORTHO05D004928 3.9e-14 82.4 123 39.0
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 1.9e-13 80.1 194 38.7
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 2.5e-13 79.7 192 36.5
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 3.3e-13 79.3 199 34.2
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 3.3e-13 79.3 183 39.9
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 4.8e-12 75.5 184 39.1
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 2.0e-10 70.1 109 39.4
PSO339G0805 Papaver somniferum HOM05D004499 ORTHO05D004928 1.0e-09 67.8 210 34.8
HPP92_001043 Vanilla planifolia HOM05D004499 ORTHO05D004928 1.7e-09 67.0 217 32.3
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 2.9e-09 66.2 93 50.5
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 1.4e-08 63.9 91 48.4
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 9.4e-08 61.2 85 47.1
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 2.7e-07 59.7 89 43.8
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 6.1e-07 58.5 195 32.3
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 6.1e-07 58.5 88 45.5
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 7.9e-07 58.2 88 46.6
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 7.9e-07 58.2 93 44.1
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 7.9e-07 58.2 89 42.7
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 7.9e-07 58.2 59 55.9
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.0e-06 57.8 80 50.0
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 1.0e-06 57.8 84 47.6
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.0e-06 57.8 84 47.6
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 1.0e-06 57.8 81 51.9
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 1.4e-06 57.4 73 54.8
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 1.4e-06 57.4 160 33.1
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 1.8e-06 57.0 81 50.6
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 1.8e-06 57.0 93 45.2
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.8e-06 57.0 85 47.1
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 1.8e-06 57.0 87 47.1
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 2.3e-06 56.6 88 45.5
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 2.3e-06 56.6 91 46.2
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 2.3e-06 56.6 91 46.2
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 2.3e-06 56.6 91 46.2
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 3.0e-06 56.2 80 46.2
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 3.9e-06 55.8 81 48.1
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 3.9e-06 55.8 128 35.9
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 5.1e-06 55.5 79 55.7
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 5.1e-06 55.5 88 45.5
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 5.1e-06 55.5 81 49.4
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 5.1e-06 55.5 81 49.4
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 5.1e-06 55.5 87 47.1
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 6.7e-06 55.1 92 44.6
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 6.7e-06 55.1 81 46.9
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 8.8e-06 54.7 37 73.0
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 8.8e-06 54.7 82 47.6
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 8.8e-06 54.7 85 45.9


User provided reference genes

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