Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G045236 Manihot esculenta HOM05D007360 ORTHO05D008235 4.4e-220 767.7 397 100.0
Manes.08G014114 Manihot esculenta HOM05D007360 ORTHO05D008235 1.9e-202 709.1 397 94.0
Manes.08G004107 Manihot esculenta HOM05D007360 ORTHO05D008235 1.7e-163 579.7 429 77.4
Manes.05G197400 Manihot esculenta HOM05D007360 ORTHO05D008235 1.5e-159 566.6 383 83.0
Manes.08G004112 Manihot esculenta HOM05D007360 ORTHO05D008235 2.1e-158 562.8 410 77.8
Manes.08G004125 Manihot esculenta HOM05D007360 ORTHO05D008235 3.1e-157 558.9 390 80.8
Manes.08G004115 Manihot esculenta HOM05D007360 ORTHO05D008235 1.2e-153 547.0 404 76.5
Manes.08G004118 Manihot esculenta HOM05D007360 ORTHO05D008235 6.0e-153 544.7 434 73.5
Manes.08G004130 Manihot esculenta HOM05D007360 ORTHO05D008235 4.3e-151 538.5 365 81.4
Manes.08G004904 Manihot esculenta HOM05D007360 ORTHO05D008235 8.2e-150 534.3 414 73.9
Manes.08G004132 Manihot esculenta HOM05D007360 ORTHO05D008235 7.7e-148 527.7 404 73.8
Manes.08G004103 Manihot esculenta HOM05D007360 ORTHO05D008235 1.7e-142 510.0 404 72.0
Manes.05G196900 Manihot esculenta HOM05D007360 ORTHO05D008235 4.7e-121 438.7 258 88.0
Manes.08G004119 Manihot esculenta HOM05D007360 ORTHO05D008235 6.1e-113 411.8 271 83.8
Potri.006G130600 Populus trichocarpa HOM05D007360 ORTHO05D008235 8.1e-81 305.1 382 53.4
Cpa.g.sc174.13 Carica papaya HOM05D007360 ORTHO05D008235 3.3e-74 283.1 406 47.5
Cfa017520 Carpinus fangiana HOM05D007360 ORTHO05D008235 1.9e-69 267.3 418 45.5
QL07p045105 Quercus lobata HOM05D007360 ORTHO05D008235 4.2e-69 266.2 412 47.6
Atru.chr8.1896 Acer truncatum HOM05D007360 ORTHO05D008235 9.3e-69 265.0 386 48.2
Haze_20630 Corylus avellana HOM05D007360 ORTHO05D008235 5.6e-66 255.8 425 44.9
COL.COLO4_27062 Corchorus olitorius HOM05D007360 ORTHO05D008235 3.1e-64 250.0 403 46.7
CsaV3_3G035660 Cucumis sativus L. HOM05D007360 ORTHO05D008235 6.4e-62 242.3 418 43.1
ClCG10G020460 Citrullus lanatus HOM05D007360 ORTHO05D008235 1.4e-61 241.1 429 42.9
CiPaw.09G179100 Carya illinoinensis HOM05D007360 ORTHO05D008235 1.9e-61 240.7 400 45.2
MELO3C009325.2 Cucumis melo HOM05D007360 ORTHO05D008235 7.1e-61 238.8 396 44.2
Thecc.05G055700 Theobroma cacao HOM05D007360 ORTHO05D008235 2.7e-60 236.9 402 46.3
TWI74G1131 Tripterygium wilfordii HOM05D007360 ORTHO05D008235 1.7e-59 234.2 403 43.2
Duzib128G1437 Durio zibethinus HOM05D007360 ORTHO05D008235 3.3e-58 229.9 386 46.4
Duzib093G0075 Durio zibethinus HOM05D007360 ORTHO05D008235 8.1e-57 225.3 385 44.4
Sabra06G0102600 Salix brachista HOM05D007360 ORTHO05D008235 1.4e-56 224.6 383 43.3
Dinv35727 Davidia involucrata HOM05D007360 ORTHO05D008235 6.9e-56 222.2 411 43.3
Ciclev10011834m.g Citrus clementina HOM05D007360 ORTHO05D008235 3.4e-55 219.9 381 41.2
vmacro20051 Vaccinium macrocarpon HOM05D007360 ORTHO05D008235 3.4e-55 219.9 385 43.1
Prupe.6G240300 Prunus persica HOM05D007360 ORTHO05D008235 1.3e-54 218.0 397 42.6
PGR004G0580 Punica granatum HOM05D007360 ORTHO05D008235 4.2e-53 213.0 388 41.5
Hma1.2p1_0111F.1_g053990 Hydrangea macrophylla HOM05D007360 ORTHO05D008235 4.6e-52 209.5 415 41.4
FvH4_6g15500 Fragaria vesca HOM05D007360 ORTHO05D008235 1.9e-50 204.1 406 40.1
TAR633G0942 Trochodendron aralioides HOM05D007360 ORTHO05D008235 9.6e-50 201.8 468 37.0
Gohir.D04G115000 Gossypium hirsutum HOM05D007360 ORTHO05D008235 2.4e-48 197.2 392 40.8
Actinidia19699 Actinidia chinensis HOM05D007360 ORTHO05D008235 3.1e-48 196.8 430 38.1
Gorai.009G419600 Gossypium raimondii HOM05D007360 ORTHO05D008235 3.1e-48 196.8 392 40.6
FAN14G4542 Fragaria x ananassa HOM05D007360 ORTHO05D008235 1.2e-47 194.9 390 40.5
Solyc09g007460.4 Solanum lycopersicum HOM05D007360 ORTHO05D008235 1.2e-47 194.9 340 40.3
FAN09G4144 Fragaria x ananassa HOM05D007360 ORTHO05D008235 2.0e-47 194.1 316 43.4
Gohir.A04G075900 Gossypium hirsutum HOM05D007360 ORTHO05D008235 2.0e-47 194.1 390 40.8
Sopen09g002350 Solanum pennellii HOM05D007360 ORTHO05D008235 2.0e-47 194.1 319 41.4
Glyma.13G137900 Glycine max HOM05D007360 ORTHO05D008235 3.4e-47 193.4 398 40.5
Sc20g0005120 Simmondsia chinensis HOM05D007360 ORTHO05D008235 6.5e-46 189.1 410 38.5
Nitab4.5_0006156g0020 Nicotiana tabacum HOM05D007360 ORTHO05D008235 1.9e-45 187.6 394 38.1
Oeu060091.1 Olea europaea HOM05D007360 ORTHO05D008235 1.9e-45 187.6 360 41.4
CANSAT80G2624 Cannabis sativa HOM05D007360 ORTHO05D008235 2.5e-45 187.2 412 38.8
Migut.L01667 Erythranthe guttata HOM05D007360 ORTHO05D008235 2.5e-45 187.2 382 40.6
PGSC0003DMG400001741 Solanum tuberosum HOM05D007360 ORTHO05D008235 3.2e-45 186.8 362 39.0
Nitab4.5_0000669g0130 Nicotiana tabacum HOM05D007360 ORTHO05D008235 7.1e-45 185.7 383 38.1
Lalb_Chr02g0156301 Lupinus albus HOM05D007360 ORTHO05D008235 3.0e-43 180.3 394 36.5
Lsat_1_v5_gn_6_30100 Lactuca sativa HOM05D007360 ORTHO05D008235 8.7e-43 178.7 383 39.2
Glyma.10G050400 Glycine max HOM05D007360 ORTHO05D008235 1.5e-42 177.9 397 38.8
FAN02G3036 Fragaria x ananassa HOM05D007360 ORTHO05D008235 2.5e-42 177.2 291 43.0
Phvul.007G164700 Phaseolus vulgaris HOM05D007360 ORTHO05D008235 1.3e-41 174.9 391 37.3
EL10Ac7g16510 Beta vulgaris HOM05D007360 ORTHO05D008235 2.1e-41 174.1 404 37.6
RcHm_v2.0_Chr3g0469001 Rosa chinensis HOM05D007360 ORTHO05D008235 4.1e-40 169.9 381 37.5
Sopen00g009140 Solanum pennellii HOM05D007360 ORTHO05D008235 4.1e-40 169.9 238 43.7
Cc06_g03670 Coffea canephora HOM05D007360 ORTHO05D008235 6.9e-40 169.1 415 35.7
Peaxi162Scf00005g04017 Petunia axillaris HOM05D007360 ORTHO05D008235 2.0e-39 167.5 407 36.1
Nn2g13027 Nelumbo nucifera HOM05D007360 ORTHO05D008235 4.5e-39 166.4 443 35.0
ECA233G0563 Erigeron canadensis HOM05D007360 ORTHO05D008235 1.3e-38 164.9 374 36.9
THA.LOC104816327 Tarenaya hassleriana HOM05D007360 ORTHO05D008235 1.7e-38 164.5 395 36.5
VMungo0720G0507 Vigna mungo HOM05D007360 ORTHO05D008235 3.2e-37 160.2 247 43.3
Thhalv10020860m.g Eutrema salsugineum HOM05D007360 ORTHO05D008235 1.2e-36 158.3 400 35.2
FAN05G5130 Fragaria x ananassa HOM05D007360 ORTHO05D008235 2.7e-36 157.1 388 36.6
Lalb_Chr21g0314721 Lupinus albus HOM05D007360 ORTHO05D008235 2.7e-36 157.1 400 36.8
Ah.08g211880 Amaranthus hybridus HOM05D007360 ORTHO05D008235 7.9e-36 155.6 298 39.6
AL3G20950 Arabidopsis lyrata HOM05D007360 ORTHO05D008235 1.5e-34 151.4 382 37.4
Lj1g0018826 Lotus japonicus HOM05D007360 ORTHO05D008235 1.5e-34 151.4 220 44.1
SGA_v2.0_scaffold126G33907 Striga asiatica HOM05D007360 ORTHO05D008235 1.5e-34 151.4 383 36.0
Carub.0003s0882 Capsella rubella HOM05D007360 ORTHO05D008235 3.3e-34 150.2 392 37.0
DCAR_020845 Daucus carota HOM05D007360 ORTHO05D008235 4.3e-34 149.8 384 37.2
Sed0020725 Sechium edule HOM05D007360 ORTHO05D008235 9.7e-34 148.7 316 38.3
AT3G09730 Arabidopsis thaliana HOM05D007360 ORTHO05D008235 3.7e-33 146.7 394 35.8
Sp3g08070 Schrenkiella parvula HOM05D007360 ORTHO05D008235 3.7e-33 146.7 390 33.8
CARHR084150 Cardamine hirsuta HOM05D007360 ORTHO05D008235 2.4e-32 144.1 396 34.3
Lj5g0015354 Lotus japonicus HOM05D007360 ORTHO05D008235 9.0e-32 142.1 263 41.4
BolC1t05436H Brassica oleracea HOM05D007360 ORTHO05D008235 1.5e-31 141.4 383 35.2
BraA01t04285Z Brassica rapa HOM05D007360 ORTHO05D008235 7.7e-31 139.0 392 35.5
CSS0042376 Camellia sinensis var. sinensis HOM05D007360 ORTHO05D008235 1.4e-29 134.8 466 32.6
A01p42170 Brassica napus HOM05D007360 ORTHO05D008235 2.1e-28 131.0 388 36.3
MSTRG.10303 Avicennia marina HOM05D007360 ORTHO05D008235 1.8e-27 127.9 332 36.1
MD04G1105400 Malus domestica HOM05D007360 ORTHO05D008235 6.3e-25 119.4 239 39.3
Aqoxy4G03227 Aquilegia oxysepala HOM05D007360 ORTHO05D008235 1.5e-23 114.8 314 35.0
Aa31LG3G2160 Aethionema arabicum HOM05D007360 ORTHO05D008235 2.1e-20 104.4 348 33.0
MD12G1122600 Malus domestica HOM05D007360 ORTHO05D008235 4.7e-20 103.2 128 47.7
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 6.1e-20 102.8 75 70.7
HanXRQChr02g0051971 Helianthus annuus HOM05D007360 ORTHO05D008235 1.3e-17 95.1 271 32.8
Phvul.001G175350 Phaseolus vulgaris HOM05D007360 ORTHO05D008235 4.8e-17 93.2 220 34.5
Manes.09G079705 Manihot esculenta HOM05D007360 ORTHO05D008235 1.0e-11 75.5 53 73.6
FAN15G1151 Fragaria x ananassa HOM05D005497 ORTHO05D006733 4.8e-09 66.6 288 28.1
AagrBONN_evm.TU.Sc2ySwM_228.3362 Anthoceros agrestis HOM05D018912 ORTHO05D021275 2.4e-08 64.3 303 27.4
SEGI_31561 Sequoiadendron giganteum HOM05D007360 ORTHO05D008235 2.4e-08 64.3 238 29.4
AUR62008531 Chenopodium quinoa HOM05D003672 ORTHO05D004121 3.1e-08 63.9 255 27.8
AUR62021559 Chenopodium quinoa HOM05D003672 ORTHO05D004121 7.0e-08 62.8 255 27.8
MBI15_g07765_MAGBIO Magnolia biondii HOM05D005497 ORTHO05D006733 7.0e-08 62.8 272 25.0
TAR625G1494 Trochodendron aralioides HOM05D005497 ORTHO05D006733 2.0e-07 61.2 245 28.2
HanXRQChr02g0051981 Helianthus annuus HOM05D007360 ORTHO05D008235 3.5e-07 60.5 120 38.3
Thecc.09G016200 Theobroma cacao HOM05D005497 ORTHO05D006733 3.5e-07 60.5 243 28.0
Nitab4.5_0002964g0010 Nicotiana tabacum HOM05D005497 ORTHO05D006733 1.3e-06 58.5 268 26.1
Hund30561 Selenicereus undatus HOM05D005497 ORTHO05D006733 1.3e-06 58.5 134 33.6
Hund30563 Selenicereus undatus HOM05D005497 ORTHO05D006733 2.2e-06 57.8 134 33.6
ClCG05G016330 Citrullus lanatus HOM05D005497 ORTHO05D006733 3.8e-06 57.0 238 24.4
Hma1.2p1_1284F.1_g272900 Hydrangea macrophylla HOM05D005497 ORTHO05D006733 3.8e-06 57.0 246 26.4
PGR044G0919 Punica granatum HOM05D005497 ORTHO05D006733 3.8e-06 57.0 246 24.8
RcHm_v2.0_Chr6g0299451 Rosa chinensis HOM05D005497 ORTHO05D006733 5.0e-06 56.6 246 26.4
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 6.5e-06 56.2 113 37.2
Ciclev10008815m.g Citrus clementina HOM05D005497 ORTHO05D006733 6.5e-06 56.2 251 25.1
EL10Ac2g04114 Beta vulgaris HOM05D005497 ORTHO05D006733 8.5e-06 55.8 251 27.1
FvH4_2g41090 Fragaria vesca HOM05D005497 ORTHO05D006733 8.5e-06 55.8 233 26.6
SalBow4G2467 Salvia bowleyana HOM05D005497 ORTHO05D006733 8.5e-06 55.8 249 26.5
Hund20189 Selenicereus undatus HOM05D007360 ORTHO05D008235 8.5e-06 55.8 111 36.0


User provided reference genes

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