Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G044501 Manihot esculenta HOM05D007042 ORTHO05D008441 2.5e-104 382.1 191 100.0
Potri.002G256700 Populus trichocarpa HOM05D007042 ORTHO05D008441 3.1e-78 295.4 193 76.2
Thecc.01G250400 Theobroma cacao HOM05D007042 ORTHO05D008441 8.4e-76 287.3 186 76.3
Gorai.001G181700 Gossypium raimondii HOM05D007042 ORTHO05D008441 1.9e-75 286.2 192 74.0
Gohir.A07G152300 Gossypium hirsutum HOM05D007042 ORTHO05D008441 4.2e-75 285.0 192 73.4
Gohir.D07G158500 Gossypium hirsutum HOM05D007042 ORTHO05D008441 2.7e-74 282.3 192 72.9
Dinv16402 Davidia involucrata HOM05D007042 ORTHO05D008441 6.0e-74 281.2 180 76.1
CiPaw.04G190700 Carya illinoinensis HOM05D007042 ORTHO05D008441 1.9e-72 276.2 193 72.0
Ciclev10022455m.g Citrus clementina HOM05D007042 ORTHO05D008441 3.3e-72 275.4 180 73.9
Haze_24706 Corylus avellana HOM05D007042 ORTHO05D008441 3.3e-72 275.4 192 71.4
Hma1.2p1_2139F.1_g314960 Hydrangea macrophylla HOM05D007042 ORTHO05D008441 3.3e-72 275.4 190 71.1
Dinv43069 Davidia involucrata HOM05D007042 ORTHO05D008441 7.3e-72 274.2 187 73.3
Duzib133G0775 Durio zibethinus HOM05D007042 ORTHO05D008441 9.6e-72 273.9 191 72.8
TWI18G1052 Tripterygium wilfordii HOM05D007042 ORTHO05D008441 2.8e-71 272.3 192 69.3
Prupe.8G215500 Prunus persica HOM05D007042 ORTHO05D008441 4.8e-71 271.6 193 73.6
Eucgr.H04779 Eucalyptus grandis HOM05D007042 ORTHO05D008441 1.4e-70 270.0 185 71.4
arahy.Tifrunner.gnm1.ann1.T4WIMW Arachis hypogaea HOM05D007042 ORTHO05D008441 3.1e-70 268.9 192 70.8
arahy.Tifrunner.gnm1.ann1.UI445S Arachis hypogaea HOM05D007042 ORTHO05D008441 3.1e-70 268.9 192 70.8
TAR633G0993 Trochodendron aralioides HOM05D007042 ORTHO05D008441 9.0e-70 267.3 190 70.5
CiPaw.03G270900 Carya illinoinensis HOM05D007042 ORTHO05D008441 1.2e-69 266.9 186 70.4
MD10G1176500 Malus domestica HOM05D007042 ORTHO05D008441 1.5e-69 266.5 193 69.4
Atru.chr5.1857 Acer truncatum HOM05D007042 ORTHO05D008441 2.6e-69 265.8 192 70.3
MD05G1188900 Malus domestica HOM05D007042 ORTHO05D008441 3.4e-69 265.4 192 70.3
Glyma.19G168400 Glycine max HOM05D007042 ORTHO05D008441 9.9e-69 263.8 191 68.1
GSVIVG01028431001 Vitis vinifera HOM05D007042 ORTHO05D008441 1.3e-68 263.5 192 69.3
MELO3C022392.2 Cucumis melo HOM05D007042 ORTHO05D008441 4.9e-68 261.5 191 67.5
CSS0015019 Camellia sinensis var. sinensis HOM05D007042 ORTHO05D008441 1.4e-67 260.0 181 72.9
Sed0010391 Sechium edule HOM05D007042 ORTHO05D008441 1.4e-67 260.0 185 69.2
Glyma.03G167300 Glycine max HOM05D007042 ORTHO05D008441 3.2e-67 258.8 191 68.6
Cpa.g.sc87.28 Carica papaya HOM05D007042 ORTHO05D008441 5.4e-67 258.1 180 70.6
CsaV3_6G007350 Cucumis sativus L. HOM05D007042 ORTHO05D008441 7.1e-67 257.7 191 66.5
Nn1g02976 Nelumbo nucifera HOM05D007042 ORTHO05D008441 1.6e-66 256.5 181 70.2
Actinidia09516 Actinidia chinensis HOM05D007042 ORTHO05D008441 2.1e-66 256.1 181 71.8
Cc02_g07760 Coffea canephora HOM05D007042 ORTHO05D008441 2.7e-66 255.8 200 68.0
vmacro14796 Vaccinium macrocarpon HOM05D007042 ORTHO05D008441 4.6e-66 255.0 190 66.3
Lj1g0019034 Lotus japonicus HOM05D007042 ORTHO05D008441 7.9e-66 254.2 190 65.3
Medtr7g098470 Medicago truncatula HOM05D007042 ORTHO05D008441 3.9e-65 251.9 191 69.1
EL10Ac7g17687 Beta vulgaris HOM05D007042 ORTHO05D008441 5.1e-65 251.5 187 65.8
Phvul.001G164800 Phaseolus vulgaris HOM05D007042 ORTHO05D008441 6.7e-65 251.1 187 66.8
Psat3g054000 Pisum sativum HOM05D007042 ORTHO05D008441 8.7e-65 250.8 182 69.2
VMungo1383G0900 Vigna mungo HOM05D007042 ORTHO05D008441 8.7e-65 250.8 187 66.8
HanXRQChr15g0468211 Helianthus annuus HOM05D007042 ORTHO05D008441 3.3e-64 248.8 197 66.0
AUR62025440 Chenopodium quinoa HOM05D007042 ORTHO05D008441 4.3e-64 248.4 182 64.8
Oeu048243.1 Olea europaea HOM05D007042 ORTHO05D008441 5.6e-64 248.1 186 68.3
Cfa002484 Carpinus fangiana HOM05D007042 ORTHO05D008441 7.4e-64 247.7 173 69.4
Lalb_Chr20g0113621 Lupinus albus HOM05D007042 ORTHO05D008441 9.6e-64 247.3 181 66.9
Lsat_1_v5_gn_9_11480 Lactuca sativa HOM05D007042 ORTHO05D008441 1.3e-63 246.9 192 66.7
RcHm_v2.0_Chr6g0286631 Rosa chinensis HOM05D007042 ORTHO05D008441 2.1e-63 246.1 199 63.8
Aqoxy5G00144 Aquilegia oxysepala HOM05D007042 ORTHO05D008441 8.1e-63 244.2 194 62.9
CAN.G786.8 Capsicum annuum HOM05D007042 ORTHO05D008441 1.1e-62 243.8 181 66.9
Ca_08743_v3 Cicer arietinum L. HOM05D007042 ORTHO05D008441 1.1e-62 243.8 190 65.8
PGR031G2106 Punica granatum HOM05D007042 ORTHO05D008441 1.4e-62 243.4 165 70.3
ECA247G0849 Erigeron canadensis HOM05D007042 ORTHO05D008441 5.3e-62 241.5 193 64.2
ClCG06G001410 Citrullus lanatus HOM05D007042 ORTHO05D008441 9.0e-62 240.7 173 68.2
Lj1A74G98 Lonicera japonica HOM05D007042 ORTHO05D008441 2.0e-61 239.6 191 64.9
QL09p041460 Quercus lobata HOM05D007042 ORTHO05D008441 2.0e-61 239.6 297 48.5
FvH4_2g20510 Fragaria vesca HOM05D007042 ORTHO05D008441 2.6e-61 239.2 202 60.4
Migut.F00782 Erythranthe guttata HOM05D007042 ORTHO05D008441 3.4e-61 238.8 185 64.9
Nitab4.5_0010166g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 1.3e-60 236.9 179 67.0
Solyc04g011530.3 Solanum lycopersicum HOM05D007042 ORTHO05D008441 1.3e-60 236.9 192 64.6
Sopen04g005710 Solanum pennellii HOM05D007042 ORTHO05D008441 1.9e-59 233.0 192 63.5
PGSC0003DMG400027743 Solanum tuberosum HOM05D007042 ORTHO05D008441 2.4e-59 232.6 181 66.3
AUR62008799 Chenopodium quinoa HOM05D007042 ORTHO05D008441 7.1e-59 231.1 162 63.6
Nitab4.5_0013552g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 9.3e-59 230.7 192 62.5
Rhsim01G0260600 Rhododendron simsii HOM05D007042 ORTHO05D008441 2.1e-58 229.6 159 67.3
SalBow3G0444 Salvia bowleyana HOM05D007042 ORTHO05D008441 1.3e-57 226.9 193 59.1
Hund05486 Selenicereus undatus HOM05D000914 ORTHO05D000718 1.3e-57 226.9 160 66.9
Peaxi162Scf00760g00324 Petunia axillaris HOM05D007042 ORTHO05D008441 1.8e-57 226.5 155 70.3
FAN24G0975 Fragaria x ananassa HOM05D003075 ORTHO05D003430 3.9e-57 225.3 182 60.4
SGA_v2.0_scaffold94G28473 Striga asiatica HOM05D007042 ORTHO05D008441 3.9e-57 225.3 187 62.0
Aa31LG8G17370 Aethionema arabicum HOM05D007042 ORTHO05D008441 1.9e-56 223.0 177 62.7
FAN15G2210 Fragaria x ananassa HOM05D007042 ORTHO05D008441 3.3e-56 222.2 182 59.9
THA.LOC104814528 Tarenaya hassleriana HOM05D007042 ORTHO05D008441 1.6e-55 219.9 180 62.2
SHI26738 Sapria himalayana HOM05D007042 ORTHO05D008441 2.1e-55 219.5 155 66.5
CDE06G0115 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 2.8e-55 219.2 186 58.1
Actinidia27524 Actinidia chinensis HOM05D007042 ORTHO05D008441 4.8e-55 218.4 191 62.3
BcaB03g16831 Brassica carinata HOM05D007042 ORTHO05D008441 1.4e-54 216.9 172 63.4
CARHR110910 Cardamine hirsuta HOM05D007042 ORTHO05D008441 1.4e-54 216.9 190 59.5
Sc17g0002810 Simmondsia chinensis HOM05D007042 ORTHO05D008441 2.4e-54 216.1 170 60.0
AL3G53360 Arabidopsis lyrata HOM05D007042 ORTHO05D008441 6.9e-54 214.5 171 63.7
FAN27G0500 Fragaria x ananassa HOM05D007042 ORTHO05D008441 1.2e-53 213.8 167 62.9
Carub.0003s3477 Capsella rubella HOM05D007042 ORTHO05D008441 1.5e-53 213.4 191 58.1
ATR0787G115 Amborella trichopoda HOM05D007042 ORTHO05D008441 4.5e-53 211.8 169 60.4
A07p00340 Brassica napus HOM05D007042 ORTHO05D008441 7.6e-53 211.1 192 57.3
Thhalv10002102m.g Eutrema salsugineum HOM05D007042 ORTHO05D008441 7.6e-53 211.1 171 62.0
BcaC06g36726 Brassica carinata HOM05D007042 ORTHO05D008441 1.3e-52 210.3 171 61.4
C07p00700 Brassica napus HOM05D007042 ORTHO05D008441 1.3e-52 210.3 171 61.4
BolC7t40512H Brassica oleracea HOM05D007042 ORTHO05D008441 1.3e-52 210.3 171 61.4
AT2G20390 Arabidopsis thaliana HOM05D007042 ORTHO05D008441 2.2e-52 209.5 171 60.8
Sp3g33630 Schrenkiella parvula HOM05D007042 ORTHO05D008441 3.8e-52 208.8 171 61.4
Sabra02G0195200 Salix brachista HOM05D007042 ORTHO05D008441 4.9e-52 208.4 127 81.1
BraA07t27825Z Brassica rapa HOM05D007042 ORTHO05D008441 1.2e-50 203.8 186 57.5
Actinidia23697 Actinidia chinensis HOM05D007042 ORTHO05D008441 3.0e-49 199.1 192 57.3
PSO063G2627 Papaver somniferum HOM05D007042 ORTHO05D008441 1.9e-48 196.4 190 56.3
PSO170G0149 Papaver somniferum HOM05D007042 ORTHO05D008441 5.7e-48 194.9 192 54.7
TPR.G20062 Trifolium pratense HOM05D007042 ORTHO05D008441 3.7e-47 192.2 127 76.4
HPP92_014817 Vanilla planifolia HOM05D007042 ORTHO05D008441 1.8e-46 189.9 152 58.6
COL.COLO4_03573 Corchorus olitorius HOM05D007042 ORTHO05D008441 7.9e-42 174.5 108 81.5
Zm00001eb088930 Zea mays HOM05D007042 ORTHO05D008441 3.0e-41 172.6 172 47.1
SEGI_30132 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 5.3e-38 161.8 171 48.0
FAN27G0749 Fragaria x ananassa HOM05D003075 ORTHO05D003430 2.0e-37 159.8 110 70.0
Os04g0129600 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 2.2e-36 156.4 119 58.8
CDE04G2760 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 8.5e-36 154.5 92 78.3
Zm00001eb307520 Zea mays HOM05D007042 ORTHO05D008441 3.2e-35 152.5 141 51.1
SHI06358 Sapria himalayana HOM05D007042 ORTHO05D008441 2.1e-34 149.8 112 61.6
Os02g0754800 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 4.8e-31 138.7 117 59.0
AagrBONN_evm.TU.Sc2ySwM_228.1144 Anthoceros agrestis HOM05D007042 ORTHO05D008441 3.0e-25 119.4 131 46.6
SEGI_30900 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 1.8e-22 110.2 98 51.0
TPR.G20307 Trifolium pratense HOM05D007042 ORTHO05D008441 3.1e-22 109.4 82 64.6
SMO116G0088 Selaginella moellendorffii HOM05D001526 ORTHO05D008441 2.5e-19 99.8 131 42.7
Mapoly0078s0039 Marchantia polymorpha HOM05D007042 ORTHO05D008441 1.0e-17 94.4 146 42.5
Potri.014G193150 Populus trichocarpa HOM05D007042 ORTHO05D008441 2.6e-16 89.7 64 71.9
Pp3c18_10950 Physcomitrium patens HOM05D007042 ORTHO05D008441 5.7e-16 88.6 144 36.1
EL10As2g23173 Beta vulgaris HOM05D007042 ORTHO05D008441 3.6e-10 69.3 81 43.2
MCO16G209 Micromonas commoda HOM05D007042 ORTHO05D008441 8.3e-07 58.2 153 25.5
Ah.02g120930 Amaranthus hybridus HOM05D055707 ORTHO05D008441 5.4e-06 55.5 56 50.0
Cre13.g604300 Chlamydomonas reinhardtii HOM05D007042 ORTHO05D008441 9.1e-06 54.7 129 24.0


User provided reference genes

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