Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G041000 Manihot esculenta HOM05D006020 ORTHO05D007665 2.1e-299 1031.6 516 100.0
Manes.13G045000 Manihot esculenta HOM05D006020 ORTHO05D007665 1.3e-216 756.5 522 75.9
Potri.002G241200 Populus trichocarpa HOM05D006020 ORTHO05D007665 1.2e-188 663.7 519 67.2
Sabra02G0183800 Salix brachista HOM05D006020 ORTHO05D007665 5.0e-184 648.3 525 65.9
Duzib133G0822 Durio zibethinus HOM05D006020 ORTHO05D007665 1.7e-171 606.7 519 61.8
Dinv04657 Davidia involucrata HOM05D006020 ORTHO05D007665 9.2e-170 600.9 519 61.1
GSVIVG01028621001 Vitis vinifera HOM05D006020 ORTHO05D007665 1.2e-169 600.5 519 62.2
Thecc.01G227300 Theobroma cacao HOM05D006020 ORTHO05D007665 2.8e-166 589.3 519 60.3
Atru.chr5.2019 Acer truncatum HOM05D006020 ORTHO05D007665 1.4e-165 587.0 522 60.7
Gorai.007G153400 Gossypium raimondii HOM05D006020 ORTHO05D007665 1.5e-164 583.6 519 59.2
Dinv19209 Davidia involucrata HOM05D006020 ORTHO05D007665 2.6e-164 582.8 521 58.9
Gohir.A11G136800 Gossypium hirsutum HOM05D006020 ORTHO05D007665 2.9e-163 579.3 519 58.6
Gohir.D11G143100 Gossypium hirsutum HOM05D006020 ORTHO05D007665 2.9e-163 579.3 528 58.3
TWI75G0236 Tripterygium wilfordii HOM05D006020 ORTHO05D007665 3.8e-163 578.9 521 59.9
CiPaw.04G106000 Carya illinoinensis HOM05D006020 ORTHO05D007665 1.0e-160 570.9 520 59.0
Ciclev10019729m.g Citrus clementina HOM05D006020 ORTHO05D007665 2.3e-160 569.7 524 58.2
COL.COLO4_09005 Corchorus olitorius HOM05D006020 ORTHO05D007665 7.1e-154 548.1 574 54.0
TAR365G0939 Trochodendron aralioides HOM05D006020 ORTHO05D007665 3.0e-152 542.7 520 54.6
Prupe.8G204200 Prunus persica HOM05D006020 ORTHO05D007665 3.3e-151 539.3 519 56.5
MD05G1177200 Malus domestica HOM05D006020 ORTHO05D007665 1.6e-150 537.0 519 56.5
CANSAT01G2399 Cannabis sativa HOM05D006020 ORTHO05D007665 2.0e-148 530.0 520 56.0
RcHm_v2.0_Chr6g0285011 Rosa chinensis HOM05D006020 ORTHO05D007665 6.4e-147 525.0 517 56.7
Lalb_Chr19g0125561 Lupinus albus HOM05D006020 ORTHO05D007665 1.0e-144 517.7 519 53.6
QL04p091507 Quercus lobata HOM05D006020 ORTHO05D007665 6.7e-144 515.0 599 51.1
Lj1C84T12 Lonicera japonica HOM05D006020 ORTHO05D007665 1.1e-143 514.2 481 56.1
FvH4_2g19230 Fragaria vesca HOM05D006020 ORTHO05D007665 2.1e-142 510.0 519 54.9
FAN27G2268 Fragaria x ananassa HOM05D006020 ORTHO05D007665 1.0e-139 501.1 519 54.1
Lj1g0020866 Lotus japonicus HOM05D006020 ORTHO05D007665 1.0e-139 501.1 519 51.4
MBI10_g05712_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.0e-139 501.1 486 53.7
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 1.0e-139 501.1 526 53.0
Glyma.18G171900 Glycine max HOM05D006020 ORTHO05D007665 3.8e-139 499.2 519 52.6
Actinidia37585 Actinidia chinensis HOM05D006020 ORTHO05D007665 1.9e-138 496.9 509 52.8
Migut.N02265 Erythranthe guttata HOM05D006020 ORTHO05D007665 5.5e-138 495.4 517 52.2
FAN24G1617 Fragaria x ananassa HOM05D006020 ORTHO05D007665 5.5e-138 495.4 514 54.3
Nn1g07811 Nelumbo nucifera HOM05D006020 ORTHO05D007665 3.5e-137 492.7 523 52.6
MSTRG.17550 Avicennia marina HOM05D006020 ORTHO05D007665 5.1e-136 488.8 517 52.0
Oeu042519.1 Olea europaea HOM05D006020 ORTHO05D007665 4.3e-135 485.7 521 50.7
Medtr7g058760 Medicago truncatula HOM05D006020 ORTHO05D007665 7.4e-135 485.0 520 49.2
TPR.G15290 Trifolium pratense HOM05D006020 ORTHO05D007665 2.8e-134 483.0 519 50.1
Haze_24783 Corylus avellana HOM05D006020 ORTHO05D007665 3.7e-134 482.6 521 52.4
Eucgr.K03608 Eucalyptus grandis HOM05D006020 ORTHO05D007665 6.3e-134 481.9 517 52.8
FAN15G0009 Fragaria x ananassa HOM05D006020 ORTHO05D007665 9.0e-133 478.0 572 49.1
Sc05g0002440 Simmondsia chinensis HOM05D006020 ORTHO05D007665 1.3e-131 474.2 520 49.0
THA.LOC104818953 Tarenaya hassleriana HOM05D006020 ORTHO05D007665 5.5e-130 468.8 522 51.0
Sed0023867 Sechium edule HOM05D006020 ORTHO05D007665 7.2e-130 468.4 523 50.9
VMungo1383G1607 Vigna mungo HOM05D006020 ORTHO05D007665 9.4e-130 468.0 516 49.8
Phvul.008G124000 Phaseolus vulgaris HOM05D006020 ORTHO05D007665 2.1e-129 466.8 516 50.8
CsaV3_7G025840 Cucumis sativus L. HOM05D006020 ORTHO05D007665 2.5e-127 459.9 526 50.4
Solyc09g061420.3 Solanum lycopersicum HOM05D006020 ORTHO05D007665 4.3e-127 459.1 520 50.2
vmacro02750 Vaccinium macrocarpon HOM05D006020 ORTHO05D007665 7.4e-127 458.4 542 48.5
Nitab4.5_0002085g0020 Nicotiana tabacum HOM05D006020 ORTHO05D007665 2.2e-126 456.8 487 52.2
PGR044G0586 Punica granatum HOM05D006020 ORTHO05D007665 3.7e-126 456.1 518 50.8
MELO3C012759.2 Cucumis melo HOM05D006020 ORTHO05D007665 6.3e-126 455.3 523 49.7
Aa31sc866G30 Aethionema arabicum HOM05D006020 ORTHO05D007665 1.1e-125 454.5 533 49.0
ECA236G4144 Erigeron canadensis HOM05D006020 ORTHO05D007665 1.1e-125 454.5 465 52.9
AT5G48830 Arabidopsis thaliana HOM05D006020 ORTHO05D007665 3.1e-125 453.0 490 50.6
Thhalv10004024m.g Eutrema salsugineum HOM05D006020 ORTHO05D007665 1.2e-124 451.1 509 49.9
Sp2g19230 Schrenkiella parvula HOM05D006020 ORTHO05D007665 3.4e-124 449.5 515 49.9
Nitab4.5_0004922g0030 Nicotiana tabacum HOM05D006020 ORTHO05D007665 5.9e-124 448.7 487 51.7
arahy.Tifrunner.gnm1.ann1.PQ4NGV Arachis hypogaea HOM05D006020 ORTHO05D007665 6.5e-123 445.3 516 48.4
Carub.0008s0856 Capsella rubella HOM05D006020 ORTHO05D007665 6.5e-123 445.3 509 48.7
C07p39450 Brassica napus HOM05D006020 ORTHO05D007665 1.1e-122 444.5 523 48.2
BolC7t44464H Brassica oleracea HOM05D006020 ORTHO05D007665 1.1e-122 444.5 523 48.2
PSO674G0123 Papaver somniferum HOM05D006020 ORTHO05D007665 1.1e-122 444.5 517 48.7
HanXRQChr10g0287321 Helianthus annuus HOM05D006020 ORTHO05D007665 1.9e-122 443.7 466 51.7
Nitab4.5_0000045g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 1.9e-122 443.7 490 51.0
CAN.G771.64 Capsicum annuum HOM05D006020 ORTHO05D007665 2.5e-122 443.4 486 51.6
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 1.6e-121 440.7 524 48.7
BcaC06g30754 Brassica carinata HOM05D006020 ORTHO05D007665 2.1e-121 440.3 523 48.0
Cc01_g17190 Coffea canephora HOM05D006020 ORTHO05D007665 3.6e-121 439.5 516 48.1
Nitab4.5_0001872g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 3.6e-121 439.5 487 50.7
BcaB07g30043 Brassica carinata HOM05D006020 ORTHO05D007665 7.9e-121 438.3 521 48.6
AL8G22000 Arabidopsis lyrata HOM05D006020 ORTHO05D007665 1.0e-120 438.0 510 49.4
CARHR182910 Cardamine hirsuta HOM05D006020 ORTHO05D007665 5.1e-120 435.6 516 48.4
BolC2t11751H Brassica oleracea HOM05D006020 ORTHO05D007665 8.8e-120 434.9 513 49.3
BraA06t26802Z Brassica rapa HOM05D006020 ORTHO05D007665 2.2e-118 430.3 534 47.4
BraA02t08755Z Brassica rapa HOM05D006020 ORTHO05D007665 4.8e-118 429.1 522 48.5
ATR0736G004 Amborella trichopoda HOM05D006020 ORTHO05D007665 1.4e-117 427.6 504 47.2
BcaC03g17676 Brassica carinata HOM05D006020 ORTHO05D007665 1.4e-117 427.6 513 48.9
C02p56820 Brassica napus HOM05D006020 ORTHO05D007665 1.4e-117 427.6 513 48.9
A02p37730 Brassica napus HOM05D006020 ORTHO05D007665 2.4e-117 426.8 515 48.9
Aqoxy5G00068 Aquilegia oxysepala HOM05D006020 ORTHO05D007665 9.1e-117 424.9 520 47.1
Sopen09g024240 Solanum pennellii HOM05D006020 ORTHO05D007665 8.5e-115 418.3 608 42.9
ClCG09G009100 Citrullus lanatus HOM05D006020 ORTHO05D007665 1.6e-113 414.1 521 47.0
Hund05517 Selenicereus undatus HOM05D006020 ORTHO05D007665 1.6e-113 414.1 505 45.5
Lsat_1_v5_gn_8_90041 Lactuca sativa HOM05D006066 ORTHO05D007720 2.7e-113 413.3 520 46.5
TAR362G0890 Trochodendron aralioides HOM05D006020 ORTHO05D007665 3.0e-112 409.8 353 58.6
Glyma.08G355500 Glycine max HOM05D006020 ORTHO05D007665 6.7e-112 408.7 471 48.6
SalBow2G1017 Salvia bowleyana HOM05D006020 ORTHO05D007665 7.0e-109 398.7 525 46.5
EL10Ac7g17782 Beta vulgaris HOM05D006020 ORTHO05D007665 1.6e-108 397.5 523 42.8
AUR62031841 Chenopodium quinoa HOM05D006020 ORTHO05D007665 2.9e-107 393.3 529 40.6
PSO170G4604 Papaver somniferum HOM05D006020 ORTHO05D007665 1.4e-104 384.4 481 46.6
AUR62008869 Chenopodium quinoa HOM05D006020 ORTHO05D007665 1.3e-102 377.9 525 39.4
CDE06G1596 Ceratophyllum demersum HOM05D006020 ORTHO05D007665 1.3e-99 367.9 372 51.6
MBI19_g27116_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 7.0e-93 345.5 307 57.7
Ah.08g213940 Amaranthus hybridus HOM05D006020 ORTHO05D007665 2.3e-91 340.5 375 45.3
HPP92_017884 Vanilla planifolia HOM05D006020 ORTHO05D007665 2.5e-90 337.0 523 38.6
Zm00001eb241910 Zea mays HOM05D006020 ORTHO05D007665 7.2e-90 335.5 453 43.0
DCAR_018556 Daucus carota HOM05D006066 ORTHO05D007720 2.8e-81 307.0 379 43.3
SEGI_37377 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 3.7e-78 296.6 525 37.0
Actinidia30087 Actinidia chinensis HOM05D006020 ORTHO05D007665 1.3e-75 288.1 209 69.4
Peaxi162Scf00107g00133 Petunia axillaris HOM05D006020 ORTHO05D007665 4.9e-70 269.6 485 38.4
SGA_v2.0_scaffold42G16144 Striga asiatica HOM05D006020 ORTHO05D007665 3.1e-64 250.4 318 48.7
MBI01_g07173_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 4.4e-63 246.5 284 47.2
arahy.Tifrunner.gnm1.ann1.3CP2KK Arachis hypogaea HOM05D001055 ORTHO05D000867 2.5e-58 230.7 229 56.3
MBI09_g17752_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.3e-54 218.4 307 43.6
Mapoly0173s0025 Marchantia polymorpha HOM05D006020 ORTHO05D007665 6.4e-54 216.1 472 31.1
HPP92_017879 Vanilla planifolia HOM05D006020 ORTHO05D007665 6.6e-51 206.1 303 39.6
Pp3c24_4300 Physcomitrium patens HOM05D006020 ORTHO05D007665 3.4e-47 193.7 500 29.6
AagrBONN_evm.TU.Sc2ySwM_344.2296 Anthoceros agrestis HOM05D006020 ORTHO05D007665 5.8e-47 193.0 454 32.2
Psat3g144000 Pisum sativum HOM05D006020 ORTHO05D007665 1.9e-45 188.0 142 63.4
SMO115G0313 Selaginella moellendorffii HOM05D006020 ORTHO05D007665 1.6e-44 184.9 419 32.5
SEGI_14686 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 1.6e-44 184.9 226 44.7
FAN15G1634 Fragaria x ananassa HOM05D006020 ORTHO05D007665 3.5e-44 183.7 268 44.4
arahy.Tifrunner.gnm1.ann1.PG1H4F Arachis hypogaea HOM05D006020 ORTHO05D007665 5.6e-42 176.4 297 37.7
Psat3g144040 Pisum sativum HOM05D006020 ORTHO05D007665 6.2e-41 172.9 270 38.9
MBI16_g14987_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 2.7e-36 157.5 125 62.4
unitig_85.g27279 Utricularia gibba HOM05D006020 ORTHO05D007665 6.7e-35 152.9 141 53.2
Cpa.g.sc8.167 Carica papaya HOM05D006020 ORTHO05D007665 6.9e-32 142.9 119 58.8
MBI12_g18650_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.2e-28 132.1 135 51.9
Cpa.g.sc8.168 Carica papaya HOM05D006020 ORTHO05D007665 4.6e-20 103.6 147 42.9
CBR_g31943 Chara braunii HOM05D006020 ORTHO05D007665 6.3e-17 93.2 140 39.3
MBI12_g40856_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 4.5e-15 87.0 91 49.5
MBI16_g14988_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 3.8e-14 84.0 98 43.9
PRCOL_00001532 Prasinoderma coloniale HOM05D006020 ORTHO05D007665 5.0e-14 83.6 188 30.3
TAR362G0264 Trochodendron aralioides HOM05D006020 ORTHO05D007665 1.4e-13 82.0 108 44.4
Haze_05914 Corylus avellana HOM05D006020 ORTHO05D007665 6.7e-11 73.2 102 45.1
Os02g0515000 Oryza sativa ssp. japonica HOM05D006020 ORTHO05D007665 6.7e-11 73.2 154 31.2
BcaB07g30044 Brassica carinata HOM05D006020 ORTHO05D007665 2.0e-07 61.6 130 34.6
MCO16G349 Micromonas commoda HOM05D006020 ORTHO05D007665 2.0e-07 61.6 67 43.3


User provided reference genes

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