Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 1.1e-226 789.6 397 100.0
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 2.7e-209 731.9 397 90.7
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 8.6e-200 700.3 400 86.5
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 5.2e-197 691.0 400 85.8
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 2.2e-195 685.6 400 84.2
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 2.9e-195 685.3 400 86.2
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 1.4e-194 682.9 400 85.0
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 1.0e-192 676.8 390 85.9
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 1.7e-192 676.0 401 84.5
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 2.3e-192 675.6 401 84.8
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 6.6e-192 674.1 401 83.3
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 8.6e-192 673.7 403 82.9
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 5.6e-191 671.0 400 83.0
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 1.2e-190 669.8 403 82.6
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 2.1e-190 669.1 401 81.8
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 2.8e-190 668.7 401 84.5
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 4.7e-190 667.9 400 81.5
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 6.2e-190 667.5 401 81.8
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 1.1e-189 666.8 400 81.5
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 1.4e-189 666.4 400 82.2
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 1.4e-189 666.4 401 83.3
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 1.8e-189 666.0 401 83.3
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 6.8e-189 664.1 397 82.1
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 8.9e-189 663.7 400 81.2
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 1.2e-188 663.3 400 80.2
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 3.4e-188 661.8 396 81.3
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 4.4e-188 661.4 405 80.7
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 7.6e-188 660.6 400 81.5
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 9.9e-188 660.2 400 81.5
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 1.3e-187 659.8 400 81.5
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 1.3e-187 659.8 400 82.5
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 2.2e-187 659.1 400 80.8
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 2.2e-187 659.1 424 76.9
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 2.9e-187 658.7 401 82.5
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 2.9e-187 658.7 398 83.4
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 6.4e-187 657.5 400 79.2
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 1.9e-186 656.0 400 80.0
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 2.4e-186 655.6 396 81.6
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 2.7e-185 652.1 402 80.8
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 2.7e-185 652.1 398 80.4
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 4.6e-185 651.4 396 82.1
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 2.3e-184 649.0 401 79.6
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 3.9e-184 648.3 400 80.8
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 5.1e-184 647.9 400 81.2
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 8.7e-184 647.1 397 78.8
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 8.7e-184 647.1 397 78.8
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 7.3e-183 644.0 395 80.8
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 1.2e-182 643.3 419 77.3
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 1.2e-182 643.3 400 79.5
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 1.6e-182 642.9 401 79.8
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 2.8e-182 642.1 401 78.8
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 2.8e-182 642.1 399 79.9
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 3.6e-182 641.7 393 81.7
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 6.2e-182 641.0 398 80.9
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 1.1e-181 640.2 400 77.8
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 1.8e-181 639.4 401 81.0
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 2.4e-181 639.0 391 80.8
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 6.9e-181 637.5 432 75.5
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 3.4e-180 635.2 402 78.4
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 5.8e-180 634.4 400 78.0
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 5.8e-180 634.4 404 79.2
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 9.9e-180 633.6 401 77.8
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 1.7e-179 632.9 393 79.9
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 1.7e-179 632.9 400 77.2
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 2.2e-179 632.5 401 77.6
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 8.4e-179 630.6 403 77.9
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 1.9e-178 629.4 400 77.2
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 5.4e-178 627.9 396 78.5
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 1.0e-176 623.6 403 78.4
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 3.0e-176 622.1 403 77.4
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 5.1e-176 621.3 398 76.6
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 5.1e-176 621.3 403 77.4
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 1.1e-175 620.2 403 77.2
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 2.5e-175 619.0 496 66.5
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 3.3e-175 618.6 398 78.4
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 3.3e-175 618.6 403 76.7
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 4.3e-175 618.2 401 77.8
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 5.6e-175 617.8 401 77.6
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 1.3e-174 616.7 401 77.6
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 1.3e-174 616.7 402 77.9
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 2.1e-174 615.9 401 77.3
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 2.1e-174 615.9 403 76.7
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 2.8e-174 615.5 402 76.4
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 3.6e-174 615.1 401 77.1
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 3.6e-174 615.1 401 77.1
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 4.8e-174 614.8 401 77.8
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 8.1e-174 614.0 400 77.2
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 1.1e-173 613.6 410 76.1
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 1.4e-173 613.2 402 76.1
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 2.4e-173 612.5 401 77.3
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 1.5e-172 609.8 401 76.8
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 2.0e-172 609.4 399 76.9
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 2.6e-172 609.0 364 82.1
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 2.6e-172 609.0 399 77.2
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 3.4e-172 608.6 387 78.0
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 4.5e-172 608.2 400 76.5
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 5.8e-172 607.8 400 76.8
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 6.4e-171 604.4 402 75.6
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 1.1e-170 603.6 387 77.5
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 1.1e-170 603.6 391 77.7
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 3.5e-169 598.6 417 72.4
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 7.9e-169 597.4 361 81.7
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 2.3e-168 595.9 553 59.1
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 5.1e-168 594.7 452 69.9
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 5.1e-168 594.7 392 75.3
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 2.5e-167 592.4 395 74.9
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 3.7e-166 588.6 400 75.2
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 4.5e-164 581.6 443 67.7
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 7.6e-164 580.9 437 68.4
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 5.5e-162 574.7 401 74.1
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 1.9e-159 566.2 402 69.2
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 5.8e-156 554.7 352 79.0
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 1.8e-149 533.1 326 81.9
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 1.4e-144 516.9 309 80.3
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 9.7e-143 510.8 292 83.9
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 1.4e-136 490.3 315 79.7
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 1.1e-130 470.7 315 75.9
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 7.2e-122 441.4 342 70.2
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 2.1e-121 439.9 391 58.3
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 3.7e-118 429.1 382 56.3
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 1.8e-117 426.8 370 54.9
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 6.5e-115 418.3 292 75.0
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 2.4e-109 399.8 340 55.6
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 1.5e-95 354.0 349 51.9
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 2.6e-95 353.2 236 77.5
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 4.4e-87 325.9 226 72.6
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 2.2e-86 323.6 289 53.3
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 6.0e-76 288.9 334 45.5
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 3.0e-67 260.0 390 38.2
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 1.1e-61 241.5 229 59.0
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 2.4e-61 240.4 205 65.4
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 2.3e-59 233.8 335 40.9
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 4.0e-56 223.0 268 50.4
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 7.6e-55 218.8 171 66.7
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 4.6e-44 183.0 98 91.8
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 2.4e-32 144.1 80 86.2
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 4.1e-32 143.3 82 85.4
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 4.2e-29 133.3 79 78.5
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 7.2e-29 132.5 132 56.8
SHI26740 Sapria himalayana HOM05D000834 ORTHO05D006956 2.6e-23 114.0 104 55.8
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 1.1e-21 108.6 65 76.9
BcaB02g11316 Brassica carinata HOM05D000834 ORTHO05D000693 4.4e-18 96.7 91 58.2
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 1.4e-11 75.1 53 67.9
Lsat_1_v5_gn_7_90061 Lactuca sativa HOM05D000834 ORTHO05D001119 7.0e-08 62.8 37 81.1
CiPaw.05G147100 Carya illinoinensis HOM05D000834 ORTHO05D006956 4.5e-07 60.1 42 73.8
Dinv43063 Davidia involucrata HOM05D000834 ORTHO05D183077 7.7e-07 59.3 32 87.5
C09p57810 Brassica napus HOM05D006883 ORTHO05D008624 6.5e-06 56.2 257 25.3


User provided reference genes

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