Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 0.0e+00 1303.9 614 100.0
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 0.0e+00 1165.2 610 87.7
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 0.0e+00 1157.5 610 87.5
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 0.0e+00 1135.6 602 85.7
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1122.5 604 83.8
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 0.0e+00 1121.7 607 85.3
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 0.0e+00 1118.2 605 84.5
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1114.4 606 84.2
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 0.0e+00 1109.0 603 84.7
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 0.0e+00 1107.4 583 86.1
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 0.0e+00 1105.5 608 82.4
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 0.0e+00 1101.7 579 85.5
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 0.0e+00 1100.5 612 83.3
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 0.0e+00 1100.5 605 84.3
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 0.0e+00 1100.5 612 80.4
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 0.0e+00 1099.0 607 82.4
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 0.0e+00 1097.0 615 82.3
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 0.0e+00 1096.6 605 83.0
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 0.0e+00 1094.0 605 82.6
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 0.0e+00 1091.3 607 83.5
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 0.0e+00 1089.7 605 82.6
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 0.0e+00 1089.7 607 83.4
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 0.0e+00 1089.7 579 84.6
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 0.0e+00 1088.2 600 82.5
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 0.0e+00 1087.8 604 82.6
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 0.0e+00 1086.6 577 84.9
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 0.0e+00 1086.2 605 82.3
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 0.0e+00 1086.2 605 82.3
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1085.1 601 81.7
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 0.0e+00 1084.7 579 84.6
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1084.7 585 84.8
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 0.0e+00 1084.7 604 82.5
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 0.0e+00 1084.3 609 82.3
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 0.0e+00 1080.9 608 81.2
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 0.0e+00 1079.7 617 80.9
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 0.0e+00 1079.3 604 82.5
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 0.0e+00 1079.3 602 81.9
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 0.0e+00 1076.2 610 81.0
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 0.0e+00 1076.2 610 81.1
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 8.4e-312 1073.2 574 84.8
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 8.4e-312 1072.8 585 81.4
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 1.3e-311 1072.4 588 82.1
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 1.7e-311 1072.0 612 80.4
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 2.1e-311 1071.6 613 80.4
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 5.0e-311 1070.5 584 83.4
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 1.4e-310 1068.9 606 80.9
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 2.4e-310 1068.1 608 81.2
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 1.0e-308 1062.8 612 79.6
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 2.3e-308 1061.6 601 80.0
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 8.7e-308 1059.7 583 85.1
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 9.6e-307 1056.2 581 82.1
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 1.2e-306 1055.8 584 81.7
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 3.6e-306 1054.3 626 77.3
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 1.8e-305 1052.0 612 78.6
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 9.0e-305 1049.7 604 78.8
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 1.3e-303 1045.8 749 67.7
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 4.6e-301 1037.3 602 77.6
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 6.0e-301 1036.9 596 78.2
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 7.8e-301 1036.6 602 77.6
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 2.3e-300 1035.0 602 77.4
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 2.3e-300 1035.0 602 77.4
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 8.7e-300 1033.1 585 79.3
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 1.5e-299 1032.3 603 78.4
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 1.9e-299 1031.9 600 77.7
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 2.1e-298 1028.5 586 79.2
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 6.2e-298 1026.9 586 79.0
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 6.2e-298 1026.9 586 79.0
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 6.2e-298 1026.9 601 78.0
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 6.2e-298 1026.9 600 78.3
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 8.1e-298 1026.5 601 77.9
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 8.1e-298 1026.5 714 69.6
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 3.1e-297 1024.6 601 78.0
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 6.9e-297 1023.5 606 77.1
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 1.6e-293 1012.3 814 60.3
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 3.5e-293 1011.1 597 76.5
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 1.3e-292 1009.2 568 79.8
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 2.5e-291 1005.0 660 72.3
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 2.5e-291 1005.0 609 74.9
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 1.8e-289 998.8 612 76.3
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 4.0e-289 997.7 591 78.7
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 1.2e-288 996.1 607 75.3
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 3.2e-286 988.0 531 84.9
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.0e-284 983.0 643 73.1
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 1.9e-283 978.8 541 83.5
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 3.7e-282 974.5 642 72.6
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 6.2e-282 973.8 561 80.2
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 1.1e-281 973.0 542 83.6
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 6.9e-281 970.3 597 74.7
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 2.7e-277 958.4 541 83.2
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 2.7e-277 958.4 612 73.7
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 1.3e-274 949.5 605 73.4
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 4.5e-272 941.0 574 76.7
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 1.6e-269 932.6 553 77.6
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 2.9e-263 911.8 615 72.0
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 4.8e-258 894.4 522 77.8
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 8.5e-255 883.6 607 68.9
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 4.4e-251 871.3 617 67.4
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 1.7e-247 859.4 546 72.5
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 8.5e-247 857.1 615 68.1
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 5.2e-236 821.2 588 62.6
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 6.3e-234 814.3 609 61.9
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 2.0e-224 782.7 491 73.5
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 3.3e-222 775.4 614 59.4
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 2.0e-219 766.1 458 78.6
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 2.5e-214 749.2 604 57.6
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 1.5e-206 723.4 531 62.7
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 8.3e-202 707.6 410 77.3
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 3.9e-191 672.2 448 71.0
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 3.3e-190 669.1 460 68.5
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 5.6e-182 641.7 353 84.1
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 3.5e-176 622.5 356 80.9
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 8.3e-125 451.8 462 52.2
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 1.5e-118 431.0 258 77.5
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 2.4e-116 423.7 219 84.9
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 1.4e-79 301.6 174 81.0
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 3.1e-79 300.4 175 78.9
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 2.8e-72 277.3 207 65.2
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 3.8e-69 266.9 163 71.2
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 4.9e-61 240.0 130 83.8
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 3.9e-50 203.8 141 66.0
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 9.6e-49 199.1 346 36.4
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 1.6e-48 198.4 160 55.6
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 6.2e-48 196.4 97 88.7
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 1.9e-44 184.9 121 70.2
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 3.2e-44 184.1 105 77.1
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 4.3e-41 173.7 83 88.0
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 7.9e-35 152.9 103 72.8
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 1.6e-27 128.6 211 35.1
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 6.1e-27 126.7 111 57.7
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 1.4e-26 125.6 66 83.3
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 9.1e-23 112.8 82 68.3
Lj1C79T15 Lonicera japonica HOM05D004940 ORTHO05D048414 2.6e-22 111.3 79 64.6
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 1.3e-21 109.0 51 88.2
Cre02.g106400 Chlamydomonas reinhardtii HOM05D001762 ORTHO05D001774 3.8e-21 107.5 301 25.9
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 5.0e-21 107.1 205 31.2
CSS0009798 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 8.5e-21 106.3 51 82.4
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.9e-20 105.1 79 63.3
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.2e-19 102.4 56 80.4
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.2e-19 102.4 56 80.4
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 3.6e-19 100.9 79 60.8
CSS0004187 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 2.3e-18 98.2 51 76.5
CSS0032793 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 2.3e-18 98.2 51 76.5
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 8.8e-18 96.3 138 40.6
PRCOL_00006657 Prasinoderma coloniale HOM05D001762 ORTHO05D001774 2.6e-17 94.7 208 26.0
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 9.7e-17 92.8 74 62.2
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 9.7e-17 92.8 74 62.2
SEGI_00315 Sequoiadendron giganteum HOM05D004940 ORTHO05D048414 2.8e-16 91.3 71 60.6
Phvul.008G143913 Phaseolus vulgaris HOM05D004940 ORTHO05D022117 4.5e-14 84.0 52 73.1
CSS0050068 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.0e-13 82.8 41 78.0
MBI13_g29642_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D001085 1.8e-10 72.0 32 78.1
Eucgr.F02231 Eucalyptus grandis HOM05D006117 ORTHO05D007996 3.5e-06 57.8 149 29.5


User provided reference genes

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