Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G033700 Manihot esculenta HOM05D003718 ORTHO05D004402 0.0e+00 1325.8 698 100.0
Manes.13G035300 Manihot esculenta HOM05D003718 ORTHO05D004402 0.0e+00 1115.5 698 82.8
Potri.002G036600 Populus trichocarpa HOM05D003718 ORTHO05D004402 1.5e-300 1035.8 698 77.2
Potri.005G226100 Populus trichocarpa HOM05D003718 ORTHO05D004402 1.4e-298 1029.2 698 76.8
Dinv34637 Davidia involucrata HOM05D003718 ORTHO05D004402 1.3e-296 1022.7 698 74.9
TWI12G1081 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 8.6e-296 1020.0 698 75.4
Sabra05G0174600 Salix brachista HOM05D003718 ORTHO05D004402 3.3e-295 1018.1 721 74.8
TWI75G1389 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 5.6e-295 1017.3 699 75.7
Cfa013046 Carpinus fangiana HOM05D003718 ORTHO05D004402 2.8e-294 1015.0 698 75.5
CiPaw.03G266000 Carya illinoinensis HOM05D003718 ORTHO05D004402 3.6e-294 1014.6 698 75.1
Atru.chr5.1725 Acer truncatum HOM05D003718 ORTHO05D004402 4.7e-294 1014.2 698 75.9
CiPaw.04G187700 Carya illinoinensis HOM05D003718 ORTHO05D004402 4.4e-292 1007.7 698 74.8
QL09p039591 Quercus lobata HOM05D003718 ORTHO05D004402 5.8e-292 1007.3 717 73.1
Thecc.01G255900 Theobroma cacao HOM05D003718 ORTHO05D004402 3.8e-291 1004.6 698 73.5
Sabra02G0029600 Salix brachista HOM05D003718 ORTHO05D004402 3.5e-289 998.0 731 73.3
Duzib211G0290 Durio zibethinus HOM05D003718 ORTHO05D004402 1.0e-288 996.5 698 72.6
CANSAT01G0671 Cannabis sativa HOM05D003718 ORTHO05D004402 1.8e-285 985.7 697 73.2
Duzib133G1085 Durio zibethinus HOM05D003718 ORTHO05D004402 1.2e-284 983.0 698 72.9
TAR633G0796 Trochodendron aralioides HOM05D003718 ORTHO05D004402 7.6e-284 980.3 699 73.2
GSVIVG01028357001 Vitis vinifera HOM05D003718 ORTHO05D004402 2.2e-283 978.8 698 73.4
Ciclev10019124m.g Citrus clementina HOM05D003718 ORTHO05D004402 6.4e-283 977.2 698 72.9
Gohir.D07G156100 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.9e-282 975.7 698 71.8
TAR362G0778 Trochodendron aralioides HOM05D003718 ORTHO05D004402 3.2e-282 974.9 701 73.3
Actinidia07305 Actinidia chinensis HOM05D003718 ORTHO05D004402 5.4e-282 974.2 698 72.3
Duzib138G1036 Durio zibethinus HOM05D003718 ORTHO05D004402 5.4e-282 974.2 698 71.8
Gorai.001G179000 Gossypium raimondii HOM05D003718 ORTHO05D004402 7.1e-282 973.8 698 71.6
CSS0049010 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 1.7e-280 969.1 698 72.3
Gohir.A07G149800 Gossypium hirsutum HOM05D003718 ORTHO05D004402 8.7e-280 966.8 698 71.1
Hma1.2p1_0273F.1_g109540 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 1.6e-278 962.6 699 71.7
CSS0040480 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 2.8e-278 961.8 698 71.9
Prupe.8G221600 Prunus persica HOM05D003718 ORTHO05D004402 8.1e-278 960.3 696 71.6
MD10G1181500 Malus domestica HOM05D003718 ORTHO05D004402 1.9e-274 949.1 701 71.0
Gorai.007G147600 Gossypium raimondii HOM05D003718 ORTHO05D004402 2.7e-273 945.3 698 70.8
CsaV3_1G015830 Cucumis sativus L. HOM05D003718 ORTHO05D004402 3.5e-273 944.9 698 69.9
Gohir.D11G137575 Gossypium hirsutum HOM05D003718 ORTHO05D004402 3.5e-273 944.9 698 70.8
MELO3C025537.2 Cucumis melo HOM05D003718 ORTHO05D004402 4.6e-273 944.5 698 69.5
MD05G1194900 Malus domestica HOM05D003718 ORTHO05D004402 2.5e-271 938.7 700 70.0
Gohir.A11G131600 Gossypium hirsutum HOM05D003718 ORTHO05D004402 3.3e-271 938.3 698 70.6
Nn1g02814 Nelumbo nucifera HOM05D003718 ORTHO05D004402 2.0e-268 929.1 700 68.6
Eucgr.K03255 Eucalyptus grandis HOM05D003718 ORTHO05D004402 8.4e-267 923.7 696 70.0
RcHm_v2.0_Chr6g0287811 Rosa chinensis HOM05D003718 ORTHO05D004402 2.5e-266 922.2 696 71.1
Peaxi162Scf00320g00717 Petunia axillaris HOM05D003718 ORTHO05D004402 9.3e-266 920.2 698 68.8
vmacro14814 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 2.1e-265 919.1 646 72.9
Sopen07g005600 Solanum pennellii HOM05D003718 ORTHO05D004402 3.5e-265 918.3 692 68.6
Sed0001928 Sechium edule HOM05D003718 ORTHO05D004402 4.6e-265 917.9 698 67.5
FvH4_2g21250 Fragaria vesca HOM05D003718 ORTHO05D004402 1.0e-264 916.8 696 70.4
Glyma.03G164400 Glycine max HOM05D003718 ORTHO05D004402 8.7e-264 913.7 698 68.6
Nn3g19693 Nelumbo nucifera HOM05D003718 ORTHO05D004402 9.6e-263 910.2 700 68.0
Glyma.19G165800 Glycine max HOM05D003718 ORTHO05D004402 1.1e-261 906.7 698 68.2
FAN15G3248 Fragaria x ananassa HOM05D003718 ORTHO05D004402 6.9e-261 904.0 718 67.8
Solyc05g046330.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 9.0e-261 903.7 692 67.8
Aqoxy1G01842 Aquilegia oxysepala HOM05D003718 ORTHO05D004402 2.0e-260 902.5 695 66.6
Lj5g0026512 Lotus japonicus HOM05D003718 ORTHO05D004402 4.5e-260 901.4 690 68.4
Phvul.001G162000 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 4.5e-260 901.4 698 67.6
FAN24G2691 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.3e-259 899.8 717 68.3
MSTRG.21485 Avicennia marina HOM05D003718 ORTHO05D004402 1.7e-259 899.4 699 67.4
VMungo1383G2169 Vigna mungo HOM05D003718 ORTHO05D004402 1.7e-259 899.4 698 67.5
Sopen05g027610 Solanum pennellii HOM05D003718 ORTHO05D004402 2.9e-259 898.7 692 67.5
THA.LOC104806254 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 8.4e-259 897.1 698 66.9
Psat6g054080 Pisum sativum HOM05D003718 ORTHO05D004402 1.1e-258 896.7 687 68.1
THA.LOC104812416 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 2.5e-258 895.6 699 66.8
Cc01_g18200 Coffea canephora HOM05D003718 ORTHO05D004402 7.1e-258 894.0 700 66.3
Migut.D00439 Erythranthe guttata HOM05D003718 ORTHO05D004402 1.2e-257 893.3 698 66.8
FAN27G0576 Fragaria x ananassa HOM05D003718 ORTHO05D004402 6.1e-257 891.0 750 65.6
CAN.G106.18 Capsicum annuum HOM05D003718 ORTHO05D004402 7.9e-257 890.6 694 67.3
Medtr1g069780 Medicago truncatula HOM05D003718 ORTHO05D004402 3.3e-255 885.2 686 67.8
Lalb_Chr02g0152551 Lupinus albus HOM05D003718 ORTHO05D004402 4.3e-255 884.8 683 68.1
Lalb_Chr21g0313961 Lupinus albus HOM05D003718 ORTHO05D004402 2.8e-254 882.1 691 67.4
CARHR227730 Cardamine hirsuta HOM05D003718 ORTHO05D004402 8.2e-254 880.6 691 66.6
Ca_09672_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 1.8e-253 879.4 700 66.6
CAN.G54.7 Capsicum annuum HOM05D003718 ORTHO05D004402 2.4e-253 879.0 692 65.9
arahy.Tifrunner.gnm1.ann1.FU7SP6 Arachis hypogaea HOM05D003718 ORTHO05D004402 1.5e-252 876.3 711 65.3
PGR031G0689 Punica granatum HOM05D003718 ORTHO05D004402 4.5e-252 874.8 677 66.8
Oeu052043.2 Olea europaea HOM05D003718 ORTHO05D004402 7.7e-252 874.0 811 60.4
AL7G32970 Arabidopsis lyrata HOM05D003718 ORTHO05D004402 1.3e-251 873.2 691 66.9
Thhalv10024580m.g Eutrema salsugineum HOM05D003718 ORTHO05D004402 2.2e-251 872.5 698 66.2
arahy.Tifrunner.gnm1.ann1.QXN52H Arachis hypogaea HOM05D003718 ORTHO05D004402 2.9e-251 872.1 703 65.4
Carub.0007s2028 Capsella rubella HOM05D003718 ORTHO05D004402 8.5e-251 870.5 698 66.3
Solyc07g014700.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 1.4e-250 869.8 652 68.7
Sp7g19230 Schrenkiella parvula HOM05D003718 ORTHO05D004402 2.5e-250 869.0 698 66.2
Phvul.007G191800 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 3.6e-249 865.1 688 66.9
Glyma.10G038000 Glycine max HOM05D003718 ORTHO05D004402 4.6e-249 864.8 665 68.7
SalBow4G0483 Salvia bowleyana HOM05D003718 ORTHO05D004402 5.1e-248 861.3 717 63.7
Nitab4.5_0001572g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 6.7e-248 860.9 692 65.6
AUR62013766 Chenopodium quinoa HOM05D003718 ORTHO05D004402 1.5e-247 859.8 688 65.3
AT4G21150 Arabidopsis thaliana HOM05D003718 ORTHO05D004402 3.3e-247 858.6 691 66.0
arahy.Tifrunner.gnm1.ann1.EWE7BX Arachis hypogaea HOM05D003718 ORTHO05D004402 7.4e-247 857.4 734 62.7
Lsat_1_v5_gn_8_92540 Lactuca sativa HOM05D003718 ORTHO05D004402 2.8e-246 855.5 681 65.2
ClCG03G002590 Citrullus lanatus HOM05D003718 ORTHO05D004402 3.7e-246 855.1 698 64.6
ECA236G3831 Erigeron canadensis HOM05D003718 ORTHO05D004402 6.3e-246 854.4 690 65.9
PSO210G5136 Papaver somniferum HOM05D003718 ORTHO05D004402 1.8e-245 852.8 699 64.7
DCAR_000921 Daucus carota HOM05D003718 ORTHO05D004402 5.3e-245 851.3 698 64.0
Nitab4.5_0000413g0180 Nicotiana tabacum HOM05D003718 ORTHO05D004402 9.1e-245 850.5 692 65.2
TPR.G5874 Trifolium pratense HOM05D003718 ORTHO05D004402 9.1e-245 850.5 646 68.9
HanXRQChr04g0110491 Helianthus annuus HOM05D003718 ORTHO05D004402 1.5e-244 849.7 645 67.3
Rhsim01G0262400 Rhododendron simsii HOM05D003718 ORTHO05D004402 3.4e-244 848.6 608 72.0
arahy.Tifrunner.gnm1.ann1.B1YDGW Arachis hypogaea HOM05D003718 ORTHO05D004402 4.5e-244 848.2 711 63.9
BcaC09g51252 Brassica carinata HOM05D003718 ORTHO05D004402 4.5e-244 848.2 691 65.1
BolC1t01458H Brassica oleracea HOM05D003718 ORTHO05D004402 5.9e-244 847.8 691 65.1
VMungo0720G0687 Vigna mungo HOM05D003718 ORTHO05D004402 1.3e-243 846.7 685 65.4
PSO832G2930 Papaver somniferum HOM05D003718 ORTHO05D004402 2.9e-243 845.5 699 64.2
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 2.6e-239 832.4 699 65.4
BcaNung03839 Brassica carinata HOM05D003718 ORTHO05D004402 8.2e-238 827.4 698 63.9
SGA_v2.0_scaffold138G35211 Striga asiatica HOM05D003718 ORTHO05D004402 1.1e-237 827.0 784 58.0
COL.COLO4_04023 Corchorus olitorius HOM05D003718 ORTHO05D004402 2.4e-237 825.9 631 68.9
BraA03t14340Z Brassica rapa HOM05D003718 ORTHO05D004402 5.9e-236 821.2 715 62.8
CDE07G1087 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 7.2e-234 814.3 698 61.5
CDE04G2599 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 2.1e-233 812.8 698 61.7
Hund17111 Selenicereus undatus HOM05D003718 ORTHO05D004402 6.1e-233 811.2 670 61.8
EL10Ac1g00739 Beta vulgaris HOM05D003718 ORTHO05D004402 1.4e-232 810.1 715 60.7
BraA01t01195Z Brassica rapa HOM05D003718 ORTHO05D004402 1.4e-232 810.1 660 64.8
Rhsim13G0036100 Rhododendron simsii HOM05D003718 ORTHO05D004402 9.7e-231 803.9 619 68.2
A01p12510 Brassica napus HOM05D003718 ORTHO05D004402 1.3e-230 803.5 660 64.2
C01p15100 Brassica napus HOM05D003718 ORTHO05D004402 1.7e-230 803.1 659 63.9
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 4.1e-229 798.5 644 65.7
ATR0736G006 Amborella trichopoda HOM05D003718 ORTHO05D004402 1.3e-227 793.5 645 62.9
Psat3g056400 Pisum sativum HOM05D003718 ORTHO05D004402 5.0e-227 791.6 698 61.2
Aa31LG6G3160 Aethionema arabicum HOM05D003718 ORTHO05D004402 1.5e-226 790.0 666 63.2
Lsat_1_v5_gn_5_182920 Lactuca sativa HOM05D003718 ORTHO05D004402 1.0e-224 783.9 700 60.0
Zm00001eb143710 Zea mays HOM05D003718 ORTHO05D004402 8.8e-224 780.8 688 58.9
TPR.G9204 Trifolium pratense HOM05D003718 ORTHO05D004402 3.4e-223 778.9 717 59.6
Os01g0911200 Oryza sativa ssp. japonica HOM05D003718 ORTHO05D004402 9.7e-223 777.3 690 58.8
A03p52670 Brassica napus HOM05D003718 ORTHO05D004402 2.2e-222 776.2 668 62.7
C07p51100 Brassica napus HOM05D003718 ORTHO05D004402 6.3e-222 774.6 668 62.6
BolC7t45610H Brassica oleracea HOM05D003718 ORTHO05D004402 6.3e-222 774.6 668 62.6
Zm00001eb365020 Zea mays HOM05D003718 ORTHO05D004402 2.4e-221 772.7 687 59.2
Sc02g0003190 Simmondsia chinensis HOM05D003718 ORTHO05D004402 3.5e-220 768.8 626 64.5
Peaxi162Scf00906g00225 Petunia axillaris HOM05D003718 ORTHO05D004402 2.9e-219 765.8 673 61.1
HPP92_000351 Vanilla planifolia HOM05D003718 ORTHO05D004402 6.8e-216 754.6 690 57.8
unitig_22.g5287 Utricularia gibba HOM05D003718 ORTHO05D004402 8.3e-214 747.7 704 57.1
Ca_08683_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 1.1e-213 747.3 701 59.5
AUR62023389 Chenopodium quinoa HOM05D003718 ORTHO05D004402 1.8e-213 746.5 688 59.7
BolC3t20629H Brassica oleracea HOM05D003718 ORTHO05D004402 1.8e-208 729.9 741 56.8
C03p83480 Brassica napus HOM05D003718 ORTHO05D004402 5.2e-200 701.8 750 54.7
Nitab4.5_0005411g0050 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.4e-197 693.7 657 58.8
unitig_8.g3735 Utricularia gibba HOM05D003718 ORTHO05D004402 8.6e-195 684.5 652 57.1
Cpa.g.sc20.44 Carica papaya HOM05D003718 ORTHO05D004402 3.6e-193 679.1 701 54.9
BcaC01g00710 Brassica carinata HOM05D003718 ORTHO05D004402 7.3e-178 628.2 550 62.5
Ah.05g177770 Amaranthus hybridus HOM05D003718 ORTHO05D004402 2.8e-177 626.3 534 61.4
Nitab4.5_0005095g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 9.6e-162 574.7 503 61.4
Actinidia37517 Actinidia chinensis HOM05D003718 ORTHO05D004402 5.5e-149 532.3 582 53.8
CsaV3_UNG055470 Cucumis sativus L. HOM05D003718 ORTHO05D004402 2.1e-140 503.8 441 61.7
Mapoly0028s0115 Marchantia polymorpha HOM05D003718 ORTHO05D004402 7.2e-133 478.8 695 41.3
AUR62043414 Chenopodium quinoa HOM05D003718 ORTHO05D004402 4.4e-122 443.0 352 64.5
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 8.0e-116 422.2 428 55.6
SEGI_27157 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 4.2e-109 399.8 361 56.0
Haze_21407 Corylus avellana HOM05D003718 ORTHO05D004402 5.2e-107 392.9 313 67.1
vmacro02673 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 9.8e-106 388.7 320 64.1
HanXRQChr11g0336771 Helianthus annuus HOM05D003718 ORTHO05D004402 4.2e-101 373.2 378 55.8
A08p15230 Brassica napus HOM05D003718 ORTHO05D001664 3.0e-99 367.1 515 45.6
FAN20G1425 Fragaria x ananassa HOM05D003718 ORTHO05D004402 3.0e-99 367.1 332 61.7
EL10Ac1g02094 Beta vulgaris HOM05D003718 ORTHO05D004402 6.8e-91 339.3 307 57.7
AagrBONN_evm.TU.Sc2ySwM_340.234 Anthoceros agrestis HOM05D003718 ORTHO05D004402 1.0e-78 298.9 425 44.0
Hma1.2p1_0576F.1_g181950 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 1.1e-67 262.3 309 51.1
CBR_g32152 Chara braunii HOM05D003718 ORTHO05D004402 2.7e-63 247.7 692 31.2
Pp3c7_6480 Physcomitrium patens HOM05D003718 ORTHO05D004402 1.2e-60 238.8 385 41.8
Psat7g093680 Pisum sativum HOM05D003718 ORTHO05D004402 2.1e-60 238.0 299 47.8
Actinidia09538 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.5e-58 231.9 156 76.3
HPP92_000418 Vanilla planifolia HOM05D003718 ORTHO05D004402 4.9e-57 226.9 653 28.6
Actinidia09536 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.0e-54 219.2 263 51.0
SHI09762 Sapria himalayana HOM05D003718 ORTHO05D004402 2.4e-48 198.0 191 58.6
FAN27G1677 Fragaria x ananassa HOM05D003718 ORTHO05D004402 3.3e-45 187.6 187 54.5
SEGI_31370 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 3.3e-45 187.6 226 47.3
CsaV3_UNG055460 Cucumis sativus L. HOM05D003718 ORTHO05D004402 5.5e-40 170.2 204 50.5
arahy.Tifrunner.gnm1.ann1.S1G2KX Arachis hypogaea HOM05D003718 ORTHO05D004402 1.2e-34 152.5 117 63.2
Actinidia09537 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.0e-33 149.4 163 50.3
SMO367G0218 Selaginella moellendorffii HOM05D003718 ORTHO05D004402 1.4e-32 145.6 135 54.8
Psat6g086960 Pisum sativum HOM05D003718 ORTHO05D004402 5.1e-30 137.1 96 70.8
Actinidia25800 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.5e-29 135.6 195 45.1
Actinidia30158 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.2e-26 125.9 88 68.2
arahy.Tifrunner.gnm1.ann1.6B4W14 Arachis hypogaea HOM05D003718 ORTHO05D004402 1.4e-24 119.0 79 73.4
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 4.2e-24 117.5 80 71.2
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 2.1e-23 115.2 140 48.6
Cre08.g368450 Chlamydomonas reinhardtii HOM05D003718 ORTHO05D004402 2.8e-20 104.8 304 31.9
Lsat_1_v5_gn_3_107020 Lactuca sativa HOM05D003718 ORTHO05D004402 5.9e-18 97.1 107 50.5
Psat6g087000 Pisum sativum HOM05D003718 ORTHO05D004402 3.8e-17 94.4 67 70.1
Actinidia30157 Actinidia chinensis HOM05D003718 ORTHO05D057597 3.0e-14 84.7 86 55.8
Lsat_1_v5_gn_4_881 Lactuca sativa HOM05D003718 ORTHO05D004402 1.5e-13 82.4 153 38.6
arahy.Tifrunner.gnm1.ann1.LM6F6Z Arachis hypogaea HOM05D003718 ORTHO05D004402 3.7e-12 77.8 114 36.8
Actinidia25801 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.4e-11 75.1 118 43.2
Lsat_1_v5_gn_9_27880 Lactuca sativa HOM05D003718 ORTHO05D004402 8.5e-09 66.6 179 31.8
Gohir.A01G185580 Gossypium hirsutum HOM05D003718 ORTHO05D000087 1.4e-08 65.9 46 67.4


User provided reference genes

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