Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 4.2e-158 561.6 351 100.0
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 3.8e-106 389.0 333 81.1
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 7.3e-94 348.2 333 74.5
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 2.0e-91 340.1 347 70.6
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 2.0e-91 340.1 347 70.6
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.0e-91 340.1 354 69.2
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.6e-91 339.7 354 69.2
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 5.8e-91 338.6 315 75.2
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 1.3e-90 337.4 333 74.2
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 1.7e-90 337.0 333 72.4
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 2.9e-90 336.3 333 73.3
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 8.4e-90 334.7 342 69.9
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 8.4e-90 334.7 335 73.4
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.9e-89 333.6 335 74.0
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 2.4e-89 333.2 338 72.2
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 5.4e-89 332.0 306 75.8
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 9.3e-89 331.3 333 73.9
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 6.0e-88 328.6 331 72.2
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 1.3e-87 327.4 311 74.6
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 2.3e-87 326.6 334 71.9
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 2.1e-85 320.1 332 70.5
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 3.7e-85 319.3 338 68.9
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 3.7e-85 319.3 348 66.7
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 4.8e-85 318.9 338 69.2
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 9.0e-84 314.7 339 68.4
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 9.0e-84 314.7 323 72.8
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 2.0e-83 313.5 338 69.2
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 2.6e-83 313.2 323 72.4
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 1.3e-82 310.8 336 66.7
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.7e-82 310.5 345 66.7
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.7e-82 310.5 276 77.9
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 4.9e-82 308.9 340 69.4
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 8.4e-82 308.1 352 59.7
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 1.1e-81 307.8 348 65.2
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 3.2e-81 306.2 342 68.1
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 4.2e-81 305.8 323 71.5
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 4.2e-81 305.8 343 67.1
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 5.5e-81 305.4 305 70.5
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 9.3e-81 304.7 344 66.3
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 1.2e-80 304.3 291 74.6
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 2.7e-80 303.1 335 68.1
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 7.9e-80 301.6 340 66.5
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 1.0e-79 301.2 334 66.5
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 1.3e-79 300.8 310 71.0
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 1.3e-79 300.8 306 71.6
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 3.0e-79 299.7 339 68.1
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 3.0e-79 299.7 343 67.1
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 3.9e-79 299.3 332 66.0
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 6.7e-79 298.5 332 68.1
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 6.7e-79 298.5 345 65.5
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 1.1e-78 297.7 326 68.4
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 2.5e-78 296.6 343 65.6
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 2.5e-78 296.6 343 65.9
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 4.3e-78 295.8 343 65.3
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 4.3e-78 295.8 282 75.2
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 1.6e-77 293.9 345 65.5
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 1.6e-77 293.9 329 63.2
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 2.1e-77 293.5 284 73.6
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 2.8e-77 293.1 340 65.3
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 2.8e-77 293.1 351 50.4
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 2.8e-77 293.1 339 64.6
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 3.7e-77 292.7 299 69.9
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 3.7e-77 292.7 327 65.7
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 8.2e-77 291.6 348 64.7
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 1.1e-76 291.2 284 73.9
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 1.4e-76 290.8 284 73.2
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 3.1e-76 289.7 332 61.1
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 5.3e-76 288.9 281 73.3
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 5.3e-76 288.9 296 71.6
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 1.2e-75 287.7 287 71.8
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 1.5e-75 287.3 333 62.8
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 2.0e-75 287.0 289 69.9
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 4.5e-75 285.8 327 59.6
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 4.5e-75 285.8 338 65.4
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 3.8e-74 282.7 340 65.0
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 8.4e-74 281.6 292 70.9
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 1.1e-73 281.2 328 66.2
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 4.2e-73 279.3 235 64.7
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 9.3e-73 278.1 338 64.8
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 1.3e-71 274.2 345 64.3
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.3e-71 274.2 340 64.4
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 1.8e-71 273.9 335 63.3
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 5.1e-71 272.3 217 69.1
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 5.1e-71 272.3 323 63.2
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 1.1e-70 271.2 315 65.4
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 4.3e-70 269.2 339 61.7
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 4.8e-69 265.8 297 68.0
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 4.8e-69 265.8 185 74.1
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 4.8e-69 265.8 310 66.5
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.9e-67 258.8 179 72.6
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.0e-66 258.1 206 67.0
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 3.8e-66 256.1 217 64.5
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 2.1e-64 250.4 331 60.1
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 2.1e-64 250.4 292 57.5
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 7.9e-64 248.4 332 59.6
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 1.0e-63 248.1 332 55.4
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 1.5e-62 244.2 350 56.0
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 4.3e-62 242.7 292 64.0
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 9.7e-62 241.5 304 64.5
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 1.3e-61 241.1 282 64.5
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 8.2e-61 238.4 333 60.1
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 1.4e-60 237.7 185 67.6
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 2.4e-60 236.9 415 50.4
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 1.9e-57 227.3 334 57.2
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 5.5e-57 225.7 309 60.8
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 9.4e-57 224.9 317 42.9
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.6e-56 223.0 332 56.6
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 8.8e-55 218.4 240 72.5
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 8.8e-55 218.4 311 57.2
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 4.8e-53 212.6 361 38.2
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.1e-52 211.5 332 55.1
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.8e-47 194.1 334 53.3
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 3.7e-45 186.4 176 58.0
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 1.1e-44 184.9 193 79.8
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 1.0e-42 178.3 192 79.7
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 1.7e-42 177.6 173 57.2
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 9.4e-41 171.8 279 55.9
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 2.3e-39 167.2 214 44.4
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 2.3e-39 167.2 192 52.1
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 1.4e-36 157.9 243 63.4
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 1.0e-34 151.8 283 51.9
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 4.0e-31 139.8 120 57.5
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 2.6e-30 137.1 275 50.9
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 7.7e-27 125.6 172 44.2
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.3e-26 124.0 161 78.9
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 4.2e-25 119.8 171 42.7
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.8e-24 117.1 192 41.7
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 3.0e-23 113.6 162 75.3
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 1.7e-21 107.8 85 58.8
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.1e-20 103.2 128 87.5
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 2.3e-18 97.4 107 47.7
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.1e-17 95.1 81 61.7
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 3.3e-17 93.6 134 64.9
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 8.9e-15 85.5 84 57.1
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 8.9e-15 85.5 122 85.2
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 5.8e-14 82.8 65 61.5
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.9e-09 67.8 41 75.6
Hma1.2p1_0870F.1_g230930 Hydrangea macrophylla HOM05D005436 ORTHO05D006215 1.8e-07 61.2 46 67.4
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 8.9e-07 58.9 56 57.1
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 1.5e-06 58.2 42 59.5


User provided reference genes

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