Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 8.6e-253 876.7 507 100.0
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 1.1e-164 583.9 509 71.9
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 1.2e-116 424.5 562 49.3
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 4.7e-110 402.5 566 48.2
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 2.4e-109 400.2 562 47.9
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 9.3e-98 361.7 595 43.5
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 1.1e-95 354.8 445 49.2
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 3.6e-94 349.7 546 43.6
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 3.6e-94 349.7 547 44.2
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 7.6e-92 342.0 540 42.4
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 9.9e-92 341.7 472 45.6
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 1.3e-91 341.3 447 46.5
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 2.2e-91 340.5 538 42.8
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 1.9e-90 337.4 535 41.7
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 2.4e-90 337.0 535 41.7
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 7.1e-90 335.5 568 44.2
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 9.3e-90 335.1 545 43.3
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 3.9e-88 329.7 545 44.4
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 8.7e-88 328.6 581 44.8
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 1.5e-87 327.8 524 42.4
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 5.6e-87 325.9 583 45.5
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 1.6e-86 324.3 539 41.9
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 2.1e-86 323.9 581 44.6
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 3.7e-86 323.2 424 46.7
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 8.1e-86 322.0 586 41.6
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 2.6e-84 317.0 431 46.4
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 2.6e-84 317.0 535 40.6
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 3.4e-84 316.6 399 48.9
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.0e-83 315.1 583 42.5
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 3.8e-83 313.2 542 40.6
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 9.3e-82 308.5 573 43.3
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 1.2e-81 308.1 433 45.7
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 1.3e-80 304.7 555 40.4
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 1.8e-80 304.3 436 46.1
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 6.7e-80 302.4 456 44.3
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 2.5e-79 300.4 546 38.3
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 7.4e-79 298.9 519 41.6
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 2.1e-78 297.4 549 40.8
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 2.1e-78 297.4 532 42.5
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 2.8e-78 297.0 428 44.2
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 1.1e-77 295.0 531 44.1
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.8e-77 294.3 545 38.3
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 3.1e-77 293.5 608 41.0
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.6e-76 290.4 421 45.4
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 6.5e-75 285.8 551 37.4
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 1.1e-74 285.0 528 40.3
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 1.9e-74 284.3 584 38.9
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 3.2e-74 283.5 579 39.9
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 5.5e-74 282.7 400 47.8
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 2.7e-73 280.4 455 42.6
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 8.7e-72 275.4 418 43.3
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 1.1e-71 275.0 383 44.9
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 4.3e-71 273.1 433 43.0
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 7.4e-71 272.3 555 41.6
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 9.0e-69 265.4 566 35.7
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 5.9e-68 262.7 418 42.3
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 5.9e-68 262.7 517 40.2
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 7.7e-68 262.3 520 44.2
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 1.1e-66 258.5 514 37.9
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 5.5e-66 256.1 508 42.1
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 1.2e-65 255.0 462 37.7
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 1.2e-65 255.0 521 36.5
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 3.6e-65 253.4 591 36.9
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 6.1e-65 252.7 419 42.5
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 6.1e-65 252.7 618 34.0
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 2.3e-64 250.8 507 42.4
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 3.9e-64 250.0 539 35.8
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 5.1e-64 249.6 505 42.4
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 9.1e-61 238.8 681 32.2
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 1.2e-60 238.4 382 43.5
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 1.2e-60 238.4 556 37.9
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 3.4e-60 236.9 517 40.8
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 3.4e-60 236.9 539 34.3
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 1.0e-59 235.3 386 43.3
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 1.1e-58 231.9 460 37.8
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.4e-58 231.5 535 38.3
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 1.4e-58 231.5 592 39.5
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 1.2e-57 228.4 507 40.6
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 3.6e-57 226.9 401 41.9
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 1.0e-56 225.3 385 40.3
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 2.0e-55 221.1 446 38.3
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 5.7e-55 219.5 421 39.2
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 3.7e-54 216.9 672 30.8
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 8.2e-54 215.7 425 39.3
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 2.4e-53 214.2 544 35.3
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 1.2e-52 211.8 574 32.2
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 1.0e-51 208.8 594 31.8
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 6.5e-51 206.1 656 31.1
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 8.5e-51 205.7 535 36.4
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 3.2e-50 203.8 540 32.4
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 2.6e-47 194.1 657 28.0
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 5.7e-47 193.0 604 32.1
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 7.5e-47 192.6 444 31.8
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 1.7e-46 191.4 601 29.3
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 3.7e-46 190.3 591 32.5
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.8e-45 188.0 590 30.2
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 4.1e-45 186.8 494 32.4
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 3.5e-44 183.7 470 33.4
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 7.7e-44 182.6 295 40.3
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 1.3e-43 181.8 590 31.4
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 3.8e-43 180.3 606 32.5
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 8.5e-43 179.1 282 41.1
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 2.5e-42 177.6 476 32.6
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 4.2e-42 176.8 304 41.1
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 9.4e-42 175.6 403 35.5
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 4.7e-41 173.3 596 33.6
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 6.1e-41 172.9 326 37.1
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 1.8e-40 171.4 462 33.1
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.6e-39 167.5 545 34.3
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 3.4e-39 167.2 502 31.1
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 3.7e-38 163.7 342 33.6
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 8.3e-38 162.5 422 33.9
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.8e-37 161.4 586 27.3
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 9.1e-37 159.1 299 37.1
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 5.9e-36 156.4 217 42.4
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 1.7e-35 154.8 403 32.8
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 5.0e-35 153.3 423 31.9
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.5e-34 151.8 285 34.4
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 1.9e-34 151.4 357 34.5
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 1.4e-32 145.2 260 35.8
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 2.3e-32 144.4 405 30.4
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 5.2e-32 143.3 379 32.2
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 2.0e-31 141.4 491 30.1
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 4.4e-31 140.2 406 34.0
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 9.8e-31 139.0 400 30.8
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 6.3e-30 136.3 160 48.1
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 4.3e-26 123.6 308 31.2
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 2.9e-22 110.9 158 46.2
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 2.9e-22 110.9 279 33.3
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 9.2e-21 105.9 393 31.8
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.2e-20 105.5 174 38.5
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 3.5e-20 104.0 192 37.5
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 1.0e-16 92.4 157 43.3
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 7.5e-15 86.3 293 36.2
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 4.9e-14 83.6 293 35.8
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 7.0e-13 79.7 123 40.7
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 1.3e-11 75.5 393 28.8
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 1.5e-10 72.0 293 35.8
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 4.3e-10 70.5 104 39.4
Lj3A62T27 Lonicera japonica HOM05D004112 ORTHO05D004739 5.6e-10 70.1 106 45.3
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 9.5e-10 69.3 240 27.1
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 6.2e-09 66.6 279 33.0
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 1.4e-08 65.5 78 48.7
SHI17827 Sapria himalayana HOM05D004112 ORTHO05D004739 2.2e-06 58.2 66 45.5


User provided reference genes

Program Settings