Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 0.0e+00 1375.9 811 100.0
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 5.3e-297 1024.2 830 72.8
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 9.1e-297 1023.5 809 75.2
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 2.1e-293 1012.3 807 74.5
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 1.8e-292 1009.2 807 73.2
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 2.6e-291 1005.4 807 73.1
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 5.3e-289 997.7 807 68.5
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 3.5e-288 995.0 822 71.9
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 8.0e-285 983.8 828 69.1
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 1.7e-282 976.1 820 71.8
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 4.8e-282 974.5 826 70.3
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 2.9e-279 965.3 863 67.6
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 1.1e-278 963.4 823 67.2
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 3.2e-278 961.8 832 65.6
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 8.8e-276 953.7 823 73.1
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 1.5e-275 953.0 807 72.0
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 5.4e-273 944.5 826 66.8
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 2.0e-272 942.6 832 67.1
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 2.7e-272 942.2 839 67.7
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 1.1e-270 936.8 832 70.0
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 4.0e-268 928.3 818 68.3
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 5.2e-268 927.9 818 66.6
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 6.8e-268 927.5 811 64.7
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 3.4e-267 925.2 828 68.1
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 2.4e-265 919.1 832 67.8
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 3.5e-264 915.2 825 69.0
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 7.8e-264 914.1 815 64.3
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 1.3e-263 913.3 823 65.4
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 1.5e-262 909.8 827 64.6
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 7.3e-262 907.5 816 68.8
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 2.3e-260 902.5 818 67.5
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 8.9e-260 900.6 799 67.7
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 1.2e-259 900.2 825 66.9
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 2.6e-259 899.0 831 64.5
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 5.8e-259 897.9 830 65.9
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 2.4e-257 892.5 812 64.8
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.2e-256 890.2 825 64.5
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 2.7e-256 889.0 822 65.7
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 1.3e-255 886.7 808 62.5
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 3.9e-255 885.2 836 69.1
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 4.3e-254 881.7 811 61.4
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 4.3e-254 881.7 819 62.0
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 1.2e-253 880.2 821 67.7
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 1.6e-253 879.8 829 64.5
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 6.2e-253 877.9 820 63.8
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 4.0e-252 875.2 827 65.5
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 5.2e-252 874.8 825 63.4
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 5.2e-252 874.8 811 62.6
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 1.5e-251 873.2 814 67.1
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 2.9e-250 869.0 817 61.8
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 4.1e-249 865.1 826 63.6
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 5.4e-249 864.8 833 61.5
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 7.0e-249 864.4 823 61.1
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 2.1e-248 862.8 818 62.0
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 1.3e-247 860.1 815 62.6
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 3.9e-247 858.6 821 62.6
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 5.0e-247 858.2 823 61.1
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 1.9e-246 856.3 830 63.1
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 2.5e-246 855.9 839 61.6
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 4.3e-246 855.1 826 65.5
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 9.5e-246 854.0 842 60.8
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 3.4e-243 845.5 812 65.1
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 5.8e-243 844.7 820 64.6
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 2.2e-242 842.8 788 65.7
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 2.2e-242 842.8 851 58.2
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 4.9e-242 841.6 818 60.5
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 4.6e-240 835.1 805 63.1
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 3.0e-239 832.4 826 60.3
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 3.9e-239 832.0 805 60.9
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 2.1e-237 826.2 826 60.3
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 1.1e-236 823.9 826 58.4
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 1.1e-236 823.9 827 59.5
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 4.0e-236 822.0 826 58.7
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 5.2e-236 821.6 689 73.9
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 7.6e-235 817.8 816 62.1
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 2.9e-234 815.8 816 61.9
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 1.4e-233 813.5 828 60.9
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 7.8e-232 807.7 773 61.1
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 2.3e-231 806.2 822 60.1
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.5e-230 803.5 889 58.7
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 5.6e-230 801.6 818 59.7
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 8.1e-229 797.7 824 59.0
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 4.4e-227 792.0 819 58.6
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.8e-219 765.0 820 55.2
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 6.4e-218 761.5 822 57.7
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 1.4e-217 760.4 817 59.0
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 5.4e-217 758.4 773 58.3
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 1.9e-214 750.0 817 58.1
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 4.8e-213 745.3 819 58.5
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 1.1e-212 744.2 825 56.2
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 2.4e-212 743.0 819 58.4
SalBow5G3625 Salvia bowleyana HOM05D003551 ORTHO05D004869 3.1e-212 742.7 844 52.1
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 1.2e-203 714.1 819 54.8
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 1.4e-201 707.2 818 54.8
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 1.9e-201 706.8 820 54.5
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 4.6e-200 702.2 824 57.3
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 2.3e-199 699.9 798 54.9
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 5.1e-199 698.7 649 66.3
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 1.1e-196 691.0 908 51.4
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 8.5e-194 681.4 826 52.8
Aqoxy6G03052 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 2.1e-192 676.8 818 52.8
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 1.4e-188 664.1 817 51.8
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 3.2e-185 652.9 833 52.8
arahy.Tifrunner.gnm1.ann1.5TZZ24 Arachis hypogaea HOM05D003551 ORTHO05D004869 3.9e-183 646.0 805 48.9
arahy.Tifrunner.gnm1.ann1.006XS9 Arachis hypogaea HOM05D003551 ORTHO05D004869 2.2e-181 640.2 805 48.7
arahy.Tifrunner.gnm1.ann1.X9TT4V Arachis hypogaea HOM05D003551 ORTHO05D004869 2.8e-181 639.8 805 48.6
SalBow5G3177 Salvia bowleyana HOM05D003551 ORTHO05D004869 1.9e-177 627.1 856 46.5
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 2.8e-173 613.2 766 49.5
Mapoly0084s0017 Marchantia polymorpha HOM05D003551 ORTHO05D004869 2.4e-172 610.1 819 49.7
Pp3c21_560 Physcomitrium patens HOM05D003551 ORTHO05D004869 9.1e-172 608.2 841 48.9
ATR0824G183 Amborella trichopoda HOM05D003551 ORTHO05D004869 5.0e-170 602.4 441 70.3
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 1.3e-157 561.2 574 65.3
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 2.2e-157 560.5 635 61.9
AagrBONN_evm.TU.Sc2ySwM_344.4679 Anthoceros agrestis HOM05D003551 ORTHO05D004869 1.2e-147 528.1 644 52.5
SMO197G0095 Selaginella moellendorffii HOM05D003551 ORTHO05D004869 2.7e-147 526.9 744 50.1
Actinidia01370 Actinidia chinensis HOM05D003551 ORTHO05D004869 1.1e-145 521.5 468 65.0
Pp3c21_561 Physcomitrium patens HOM05D003551 ORTHO05D004869 1.5e-142 511.1 714 49.7
QL04p087069 Quercus lobata HOM05D003551 ORTHO05D004869 2.0e-139 500.7 564 62.2
CBR_g23824 Chara braunii HOM05D003551 ORTHO05D004869 2.9e-133 480.3 883 45.1
AUR62020542 Chenopodium quinoa HOM05D003551 ORTHO05D004869 3.6e-128 463.4 852 41.7
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 3.7e-125 453.4 473 64.5
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 2.4e-124 450.7 534 58.1
Atru.chr11.1974 Acer truncatum HOM05D003551 ORTHO05D004869 9.2e-124 448.7 349 68.5
SEGI_37161 Sequoiadendron giganteum HOM05D003551 ORTHO05D004869 8.1e-120 435.6 534 52.1
TAR374G0468 Trochodendron aralioides HOM05D003551 ORTHO05D004869 3.4e-118 430.3 313 72.2
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 3.0e-114 417.2 422 68.5
SHI17843 Sapria himalayana HOM05D003551 ORTHO05D000023 1.6e-112 411.4 459 51.2
Medtr4g006000 Medicago truncatula HOM05D003551 ORTHO05D004869 2.2e-101 374.4 516 45.9
FAN07G2018 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.1e-100 372.1 277 69.7
PRCOL_00005223 Prasinoderma coloniale HOM05D003551 ORTHO05D004869 1.8e-98 364.8 825 37.7
TPR.G18550 Trifolium pratense HOM05D003551 ORTHO05D004869 3.4e-94 350.5 525 40.6
Cre06.g277050 Chlamydomonas reinhardtii HOM05D003551 ORTHO05D004869 1.1e-89 335.5 896 36.0
AUR62015661 Chenopodium quinoa HOM05D003551 ORTHO05D004869 8.2e-88 329.3 525 44.8
Medtr4g005970 Medicago truncatula HOM05D003551 ORTHO05D004869 2.1e-83 314.7 447 44.3
MCO05G293 Micromonas commoda HOM05D003551 ORTHO05D004869 7.9e-83 312.8 803 32.5
Cfa023305 Carpinus fangiana HOM05D003551 ORTHO05D004869 3.6e-59 234.2 515 33.2
Sc04g0005970 Simmondsia chinensis HOM05D003551 ORTHO05D004869 2.3e-58 231.5 396 55.8
ATR0824G018 Amborella trichopoda HOM05D003551 ORTHO05D004869 2.8e-56 224.6 373 53.6
Actinidia08115 Actinidia chinensis HOM05D003551 ORTHO05D004869 2.9e-53 214.5 334 53.6
Actinidia01371 Actinidia chinensis HOM05D002413 ORTHO05D002638 2.2e-45 188.3 190 61.1
HPP92_027088 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.1e-44 186.0 420 36.0
unitig_22.g6421 Utricularia gibba HOM05D003551 ORTHO05D004869 4.7e-43 180.6 136 66.2
BcaB04g19498 Brassica carinata HOM05D003551 ORTHO05D004869 1.6e-35 155.6 139 57.6
HPP92_027649 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.2e-34 150.6 344 36.3
HPP92_028576 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.4e-33 147.5 314 38.2
Actinidia08116 Actinidia chinensis HOM05D003551 ORTHO05D004869 1.6e-30 139.0 129 60.5
Zm00001eb279220 Zea mays HOM05D003551 ORTHO05D004869 5.9e-30 137.1 143 58.0
HPP92_006539 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.2e-22 112.8 129 52.7
BcaB06g26385 Brassica carinata HOM05D003551 ORTHO05D016818 2.0e-22 112.1 96 57.3
HPP92_006576 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.9e-21 107.8 78 66.7
BcaB07g33803 Brassica carinata HOM05D003551 ORTHO05D032399 8.6e-21 106.7 98 54.1
HPP92_006872 Vanilla planifolia HOM05D003551 ORTHO05D016818 7.3e-20 103.6 86 58.1
Migut.C01140 Erythranthe guttata HOM05D003551 ORTHO05D004869 3.6e-19 101.3 222 36.5
HPP92_028550 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.6e-19 101.3 77 63.6
HPP92_006854 Vanilla planifolia HOM05D003551 ORTHO05D016818 1.1e-18 99.8 82 58.5
HPP92_026938 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.4e-18 99.4 352 30.7
HPP92_027653 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.4e-17 94.4 308 30.8
arahy.Tifrunner.gnm1.ann1.LJ7GP5 Arachis hypogaea HOM05D003551 ORTHO05D004869 8.3e-16 90.1 102 52.9
HPP92_028371 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.2e-14 86.3 79 59.5
HPP92_027078 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.5e-14 84.7 301 29.9
HPP92_027083 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.0e-13 83.2 152 44.1
HPP92_027994 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.9e-13 81.3 140 41.4
Lsat_1_v5_gn_1_12340 Lactuca sativa HOM05D003551 ORTHO05D004869 6.6e-13 80.5 138 44.2
HPP92_028370 Vanilla planifolia HOM05D003551 ORTHO05D016818 3.3e-12 78.2 74 51.4
HPP92_006538 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.6e-12 77.4 70 61.4
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 3.6e-11 74.7 71 60.6
HPP92_006855 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.4e-10 72.8 268 29.5
Lalb_Chr05g0228661 Lupinus albus HOM05D003551 ORTHO05D048508 3.1e-10 71.6 126 39.7
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 8.9e-10 70.1 47 63.8
HPP92_026933 Vanilla planifolia HOM05D015067 ORTHO05D427257 5.8e-09 67.4 41 75.6
HPP92_006540 Vanilla planifolia HOM05D003551 ORTHO05D016818 7.6e-09 67.0 67 49.3
HPP92_026598 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.3e-08 66.2 80 48.8
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 4.9e-08 64.3 90 48.9
Sed0014055 Sechium edule HOM05D003551 ORTHO05D004869 4.9e-08 64.3 83 50.6
HPP92_028492 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.4e-07 62.0 122 37.7
HPP92_027652 Vanilla planifolia HOM05D003551 ORTHO05D016818 4.1e-07 61.2 59 52.5
HPP92_006537 Vanilla planifolia HOM05D003551 ORTHO05D431158 5.4e-07 60.8 46 56.5
HPP92_006544 Vanilla planifolia HOM05D003551 ORTHO05D004869 9.2e-07 60.1 148 34.5
Lj6A816T56 Lonicera japonica HOM05D003551 ORTHO05D004869 1.2e-06 59.7 51 62.7
HPP92_028506 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.5e-06 58.2 54 61.1
arahy.Tifrunner.gnm1.ann1.C8ML0J Arachis hypogaea HOM05D003551 ORTHO05D004869 7.8e-06 57.0 55 54.5
Lsat_1_v5_gn_2_63120 Lactuca sativa HOM05D005044 ORTHO05D006799 7.8e-06 57.0 116 37.1


User provided reference genes

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