Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G017100 Manihot esculenta HOM05D001304 ORTHO05D008890 3.5e-124 448.4 235 100.0
Ciclev10032669m.g Citrus clementina HOM05D001304 ORTHO05D008890 6.6e-99 364.4 228 83.3
TWI36G0586 Tripterygium wilfordii HOM05D001304 ORTHO05D008890 1.5e-98 363.2 235 80.9
PGR119G0865 Punica granatum HOM05D001304 ORTHO05D008890 7.3e-98 360.9 238 81.1
Haze_12318 Corylus avellana HOM05D001304 ORTHO05D008890 9.6e-98 360.5 236 82.2
Dinv11009 Davidia involucrata HOM05D001304 ORTHO05D008890 2.8e-97 359.0 235 80.9
Potri.010G053600 Populus trichocarpa HOM05D001304 ORTHO05D008890 5.3e-96 354.8 236 82.6
TAR622G1249 Trochodendron aralioides HOM05D001304 ORTHO05D008890 9.0e-96 354.0 235 80.4
Sabra10G0017000 Salix brachista HOM05D001304 ORTHO05D008890 1.3e-94 350.1 228 82.9
Eucgr.H04690 Eucalyptus grandis HOM05D001304 ORTHO05D008890 1.7e-94 349.7 241 78.4
Cfa009288 Carpinus fangiana HOM05D001304 ORTHO05D008890 2.2e-94 349.4 232 80.2
FvH4_4g24830 Fragaria vesca HOM05D001304 ORTHO05D008890 6.4e-94 347.8 236 77.5
Prupe.1G237600 Prunus persica HOM05D001304 ORTHO05D008890 2.1e-92 342.8 237 75.9
Glyma.11G246700 Glycine max HOM05D001304 ORTHO05D008890 3.5e-92 342.0 241 75.5
RcHm_v2.0_Chr4g0431911 Rosa chinensis HOM05D001304 ORTHO05D008890 3.5e-92 342.0 236 75.8
FAN12G0763 Fragaria x ananassa HOM05D001304 ORTHO05D008890 4.6e-92 341.7 232 77.2
FAN22G1346 Fragaria x ananassa HOM05D001304 ORTHO05D008890 4.6e-92 341.7 233 76.4
COL.COLO4_23565 Corchorus olitorius HOM05D001304 ORTHO05D008890 6.0e-92 341.3 234 77.8
VMungo1383G0240 Vigna mungo HOM05D001304 ORTHO05D008890 6.0e-92 341.3 236 76.3
Gohir.D04G181000 Gossypium hirsutum HOM05D001304 ORTHO05D008890 1.3e-91 340.1 232 78.0
MSTRG.7966 Avicennia marina HOM05D001304 ORTHO05D008890 1.7e-91 339.7 225 78.7
FAN07G1515 Fragaria x ananassa HOM05D001304 ORTHO05D008890 1.7e-91 339.7 232 76.7
Aqoxy5G03572 Aquilegia oxysepala HOM05D001304 ORTHO05D008890 5.1e-91 338.2 236 75.8
FAN17G2678 Fragaria x ananassa HOM05D001304 ORTHO05D008890 1.5e-90 336.7 232 76.3
Carub.0002s1413 Capsella rubella HOM05D001304 ORTHO05D008890 1.9e-90 336.3 231 75.3
CsaV3_2G025190 Cucumis sativus L. HOM05D001304 ORTHO05D008890 1.9e-90 336.3 233 77.7
AL2G26400 Arabidopsis lyrata HOM05D001304 ORTHO05D008890 2.5e-90 335.9 231 75.3
MD13G1108600 Malus domestica HOM05D001304 ORTHO05D008890 2.5e-90 335.9 238 74.8
CARHR060290 Cardamine hirsuta HOM05D001304 ORTHO05D008890 3.3e-90 335.5 239 73.6
Cc11_g16390 Coffea canephora HOM05D001304 ORTHO05D008890 3.3e-90 335.5 238 75.6
AT1G67700 Arabidopsis thaliana HOM05D001304 ORTHO05D008890 4.3e-90 335.1 231 75.3
BcaB03g15175 Brassica carinata HOM05D001304 ORTHO05D008890 7.4e-90 334.3 236 74.6
Actinidia15135 Actinidia chinensis HOM05D001304 ORTHO05D008890 1.6e-89 333.2 235 75.3
BcaC08g46187 Brassica carinata HOM05D001304 ORTHO05D008890 1.6e-89 333.2 235 74.5
Oeu020321.1 Olea europaea HOM05D001304 ORTHO05D008890 2.8e-89 332.4 233 75.5
AUR62005553 Chenopodium quinoa HOM05D001304 ORTHO05D008890 3.6e-89 332.0 234 73.5
THA.LOC104825532 Tarenaya hassleriana HOM05D001304 ORTHO05D008890 3.6e-89 332.0 233 75.1
Phvul.001G258300 Phaseolus vulgaris HOM05D001304 ORTHO05D008890 1.1e-88 330.5 232 75.0
Thhalv10019020m.g Eutrema salsugineum HOM05D001304 ORTHO05D008890 1.8e-88 329.7 236 73.3
Nitab4.5_0000041g0390 Nicotiana tabacum HOM05D001304 ORTHO05D008890 1.8e-88 329.7 234 78.2
Sed0004969 Sechium edule HOM05D001304 ORTHO05D008890 1.8e-88 329.7 233 75.5
C06p42370 Brassica napus HOM05D001304 ORTHO05D007800 4.0e-88 328.6 231 74.5
Sp5g22690 Schrenkiella parvula HOM05D001304 ORTHO05D008890 4.0e-88 328.6 232 74.1
SGA_v2.0_scaffold484G52361 Striga asiatica HOM05D001304 ORTHO05D008890 4.0e-88 328.6 235 74.9
AUR62024180 Chenopodium quinoa HOM05D001304 ORTHO05D008890 1.5e-87 326.6 234 72.6
BcaC08g46045 Brassica carinata HOM05D001304 ORTHO05D008890 3.4e-87 325.5 231 74.5
C06p38480 Brassica napus HOM05D001304 ORTHO05D008890 3.4e-87 325.5 231 74.5
Ca_16494_v3 Cicer arietinum L. HOM05D001304 ORTHO05D008890 3.4e-87 325.5 235 76.2
Atru.chr11.2216 Acer truncatum HOM05D001304 ORTHO05D008890 7.6e-87 324.3 200 84.5
A07p32450 Brassica napus HOM05D001304 ORTHO05D008890 9.9e-87 323.9 231 74.0
BraA07t30869Z Brassica rapa HOM05D001304 ORTHO05D008890 9.9e-87 323.9 231 74.0
Migut.K00680 Erythranthe guttata HOM05D001304 ORTHO05D008890 9.9e-87 323.9 247 72.5
PSO063G7645 Papaver somniferum HOM05D001304 ORTHO05D008890 9.9e-87 323.9 236 71.6
CiPaw.05G174500 Carya illinoinensis HOM05D001304 ORTHO05D008890 1.3e-86 323.6 187 86.1
PSO782G0777 Papaver somniferum HOM05D001304 ORTHO05D008890 2.9e-86 322.4 236 71.2
Peaxi162Scf00128g00729 Petunia axillaris HOM05D001304 ORTHO05D008890 2.9e-86 322.4 232 77.2
PGSC0003DMG400017453 Solanum tuberosum HOM05D001304 ORTHO05D008890 1.1e-85 320.5 236 75.4
Aa31LG4G12100 Aethionema arabicum HOM05D001304 ORTHO05D008890 1.9e-85 319.7 232 72.0
SalBow2G0118 Salvia bowleyana HOM05D001304 ORTHO05D008890 1.9e-85 319.7 227 71.8
arahy.Tifrunner.gnm1.ann1.VHC2JK Arachis hypogaea HOM05D001304 ORTHO05D008890 5.5e-85 318.2 236 70.8
unitig_8.g2912 Utricularia gibba HOM05D000468 ORTHO05D008890 5.5e-85 318.2 235 71.9
CANSAT01G0179 Cannabis sativa HOM05D001304 ORTHO05D008890 6.0e-84 314.7 238 72.3
Solyc05g014310.3 Solanum lycopersicum HOM05D001304 ORTHO05D008890 7.9e-84 314.3 234 73.5
Sopen05g009420 Solanum pennellii HOM05D001304 ORTHO05D008890 1.3e-83 313.5 232 74.6
BolC6t39193H Brassica oleracea HOM05D001304 ORTHO05D007800 3.0e-83 312.4 260 66.2
Gohir.A04G137800 Gossypium hirsutum HOM05D001304 ORTHO05D008890 6.7e-83 311.2 232 73.7
Sc04g0009800 Simmondsia chinensis HOM05D001304 ORTHO05D008890 6.7e-83 311.2 238 71.0
Rhsim12G0107100 Rhododendron simsii HOM05D001304 ORTHO05D008890 5.6e-82 308.1 230 70.9
EL10As2g23248 Beta vulgaris HOM05D001304 ORTHO05D008890 9.6e-82 307.4 226 73.0
Gorai.012G174200 Gossypium raimondii HOM05D001304 ORTHO05D008890 2.8e-81 305.8 232 72.4
Nitab4.5_0001318g0090 Nicotiana tabacum HOM05D001304 ORTHO05D008890 8.1e-81 304.3 233 75.1
Duzib251G0230 Durio zibethinus HOM05D001304 ORTHO05D008890 2.4e-80 302.8 241 71.0
Thecc.02G270700 Theobroma cacao HOM05D001304 ORTHO05D008890 1.2e-79 300.4 241 69.7
Lj6g0017703 Lotus japonicus HOM05D001304 ORTHO05D008890 4.5e-79 298.5 237 69.6
Ah.02g130500 Amaranthus hybridus HOM05D001304 ORTHO05D008890 1.9e-77 293.1 218 71.1
CDE02G1129 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 3.2e-77 292.4 229 67.7
Hund06057 Selenicereus undatus HOM05D001304 ORTHO05D008890 2.1e-76 289.7 233 66.1
ATR0824G252 Amborella trichopoda HOM05D001304 ORTHO05D008890 6.7e-75 284.6 237 65.4
Lalb_Chr08g0230761 Lupinus albus HOM05D001304 ORTHO05D008890 6.7e-75 284.6 238 66.4
CDE09G0600 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 4.3e-74 282.0 229 67.2
ECA233G5962 Erigeron canadensis HOM05D000468 ORTHO05D000548 4.3e-74 282.0 211 68.2
Cpa.g.c30628.2 Carica papaya HOM05D001304 ORTHO05D008890 1.6e-73 280.0 232 67.2
Lj6C819T3 Lonicera japonica HOM05D001304 ORTHO05D008890 1.1e-72 277.3 240 65.4
HanXRQChr08g0207321 Helianthus annuus HOM05D001304 ORTHO05D008890 5.9e-71 271.6 239 62.8
Lsat_1_v5_gn_8_150960 Lactuca sativa HOM05D001304 ORTHO05D008890 6.1e-68 261.5 238 61.8
Actinidia24567 Actinidia chinensis HOM05D001304 ORTHO05D008890 6.7e-67 258.1 235 60.9
CDE04G1632 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 1.3e-65 253.8 225 60.0
Medtr3g086040 Medicago truncatula HOM05D001304 ORTHO05D008890 2.8e-65 252.7 232 61.6
Hma1.2p1_0079F.1_g041530 Hydrangea macrophylla HOM05D001304 ORTHO05D008890 4.1e-64 248.8 232 61.6
TPR.G33410 Trifolium pratense HOM05D001304 ORTHO05D008890 9.0e-64 247.7 221 63.3
HPP92_004594 Vanilla planifolia HOM05D001304 ORTHO05D008890 9.0e-64 247.7 163 76.1
GSVIVG01010306001 Vitis vinifera HOM05D001304 ORTHO05D008890 2.2e-62 243.0 146 84.2
Os02g0600200 Oryza sativa ssp. japonica HOM05D001304 ORTHO05D008890 1.4e-61 240.4 212 63.2
Zm00001eb246340 Zea mays HOM05D001304 ORTHO05D008890 3.2e-61 239.2 192 65.6
CSS0032412 Camellia sinensis var. sinensis HOM05D000063 ORTHO05D008721 7.2e-61 238.0 142 82.4
vmacro16148 Vaccinium macrocarpon HOM05D001304 ORTHO05D008890 1.1e-58 230.7 139 84.2
TAR629G1650 Trochodendron aralioides HOM05D001304 ORTHO05D008890 4.1e-56 222.2 139 81.3
BolC6t38945H Brassica oleracea HOM05D001304 ORTHO05D008890 2.6e-50 203.0 125 84.8
MELO3C010716.2 Cucumis melo HOM05D001304 ORTHO05D008890 1.8e-48 196.8 138 76.1
arahy.Tifrunner.gnm1.ann1.Q18UTF Arachis hypogaea HOM05D001304 ORTHO05D008890 3.5e-47 192.6 236 50.4
AagrBONN_evm.TU.Sc2ySwM_368.469 Anthoceros agrestis HOM05D001304 ORTHO05D008890 3.2e-45 186.0 192 51.6
Psat5g093920 Pisum sativum HOM05D001304 ORTHO05D008890 4.2e-45 185.7 95 91.6
SEGI_40444 Sequoiadendron giganteum HOM05D001304 ORTHO05D008890 7.2e-45 184.9 252 44.0
Pp3c14_9580 Physcomitrium patens HOM05D001304 ORTHO05D008890 1.6e-44 183.7 171 54.4
Duzib248G0877 Durio zibethinus HOM05D001304 ORTHO05D008890 2.3e-43 179.9 228 50.9
Cfa021197 Carpinus fangiana HOM05D001304 ORTHO05D008890 3.7e-41 172.6 140 69.3
Mapoly0101s0039 Marchantia polymorpha HOM05D001304 ORTHO05D008890 5.9e-39 165.2 181 48.1
CBR_g28672 Chara braunii HOM05D001304 ORTHO05D008890 1.6e-36 157.1 179 46.9
DCAR_026486 Daucus carota HOM05D000468 ORTHO05D008890 3.6e-36 156.0 140 61.4
MBI06_g05241_MAGBIO Magnolia biondii HOM05D001304 ORTHO05D008890 9.5e-29 131.3 235 43.0
SMO367G0665 Selaginella moellendorffii HOM05D001304 ORTHO05D008890 2.1e-28 130.2 172 40.7
ClCG08G017440 Citrullus lanatus HOM05D001304 ORTHO05D008890 2.0e-23 113.6 93 72.0
Oeu009356.1 Olea europaea HOM05D001304 ORTHO05D008890 5.2e-19 99.0 57 86.0
vmacro16147 Vaccinium macrocarpon HOM05D001304 ORTHO05D008890 3.4e-18 96.3 91 58.2
PRCOL_00000361 Prasinoderma coloniale HOM05D001304 ORTHO05D008890 7.3e-13 78.6 161 27.3
MCO01G115 Micromonas commoda HOM05D001304 ORTHO05D008890 1.2e-12 77.8 202 27.7
Ah.03g133980 Amaranthus hybridus HOM05D007778 ORTHO05D009819 3.6e-12 76.3 231 30.3


User provided reference genes

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