Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 1.8e-111 406.0 208 100.0
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 1.1e-108 396.7 208 97.1
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 6.9e-108 394.0 208 95.7
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 9.0e-108 393.7 208 96.6
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.2e-107 393.3 208 95.7
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 2.0e-107 392.5 208 95.2
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 2.6e-107 392.1 208 95.7
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 4.5e-107 391.3 208 95.7
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 4.5e-107 391.3 208 94.7
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 5.9e-107 391.0 206 95.1
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 5.9e-107 391.0 206 95.1
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 5.9e-107 391.0 208 94.7
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 7.6e-107 390.6 208 94.7
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 7.6e-107 390.6 208 95.2
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 1.0e-106 390.2 208 94.7
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 1.0e-106 390.2 208 95.2
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 1.7e-106 389.4 208 94.7
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 2.9e-106 388.7 208 94.7
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 2.9e-106 388.7 208 94.7
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 3.8e-106 388.3 208 94.2
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 5.0e-106 387.9 207 93.7
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 5.0e-106 387.9 208 93.8
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 6.5e-106 387.5 208 93.8
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 1.1e-105 386.7 208 93.8
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 1.9e-105 386.0 206 94.7
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 4.2e-105 384.8 208 92.8
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 7.2e-105 384.0 208 92.8
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 7.2e-105 384.0 208 92.8
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 7.2e-105 384.0 208 93.8
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 9.4e-105 383.6 206 93.7
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 9.4e-105 383.6 208 93.3
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 9.4e-105 383.6 208 93.3
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 9.4e-105 383.6 206 93.2
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 9.4e-105 383.6 208 92.8
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 1.6e-104 382.9 208 92.8
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 1.6e-104 382.9 208 92.3
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 1.6e-104 382.9 208 92.8
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 2.1e-104 382.5 208 92.3
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 2.7e-104 382.1 206 92.7
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 3.6e-104 381.7 213 92.0
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 4.6e-104 381.3 207 91.8
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 4.6e-104 381.3 208 91.8
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 6.1e-104 380.9 208 92.3
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 6.1e-104 380.9 208 91.3
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 6.1e-104 380.9 208 92.8
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 7.9e-104 380.6 207 92.8
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 1.4e-103 379.8 208 91.3
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 1.8e-103 379.4 208 92.3
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 2.3e-103 379.0 206 92.7
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 2.3e-103 379.0 207 93.2
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 2.3e-103 379.0 208 92.3
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 3.0e-103 378.6 210 91.4
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 3.9e-103 378.3 208 90.4
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 3.9e-103 378.3 207 91.3
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 8.8e-103 377.1 208 90.9
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 8.8e-103 377.1 208 89.9
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.1e-102 376.7 208 90.4
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 2.5e-102 375.6 208 89.9
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 3.3e-102 375.2 206 89.8
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 4.3e-102 374.8 206 90.8
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 7.4e-102 374.0 208 90.4
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 7.4e-102 374.0 206 91.3
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 1.3e-101 373.2 208 90.9
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 1.7e-101 372.9 208 90.9
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 2.8e-101 372.1 209 90.4
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 3.7e-101 371.7 208 89.4
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 3.7e-101 371.7 206 88.8
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 4.8e-101 371.3 208 90.4
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 4.8e-101 371.3 208 90.4
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 4.8e-101 371.3 207 89.9
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 6.3e-101 370.9 208 89.9
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 8.2e-101 370.5 207 89.4
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 8.2e-101 370.5 208 90.4
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 1.1e-100 370.2 208 90.4
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 1.1e-100 370.2 207 89.4
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 1.4e-100 369.8 208 89.9
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 1.4e-100 369.8 209 90.0
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 1.8e-100 369.4 209 89.5
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 1.8e-100 369.4 209 89.5
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 2.4e-100 369.0 208 89.9
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 2.4e-100 369.0 208 89.9
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 2.4e-100 369.0 203 91.1
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 4.1e-100 368.2 208 89.4
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 4.1e-100 368.2 208 91.8
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 5.3e-100 367.9 218 86.2
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 1.5e-99 366.3 208 88.0
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 2.0e-99 365.9 208 88.5
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 3.4e-99 365.2 208 88.5
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 3.4e-99 365.2 205 89.8
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 4.5e-99 364.8 207 88.4
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 7.7e-99 364.0 207 90.8
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 1.7e-98 362.8 205 89.3
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 2.2e-98 362.5 196 93.4
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.7e-96 355.5 207 87.4
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.7e-96 355.5 207 87.4
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.0e-95 353.6 207 87.0
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 1.4e-95 353.2 208 84.1
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.4e-95 353.2 208 83.2
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.4e-95 353.2 208 82.7
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 3.9e-95 351.7 208 86.5
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 8.8e-95 350.5 208 86.1
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 9.7e-94 347.1 207 85.0
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 1.4e-92 343.2 178 96.1
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 1.4e-92 343.2 178 96.1
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 2.4e-92 342.4 208 86.1
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 5.3e-92 341.3 179 95.0
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 4.5e-91 338.2 178 95.5
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 7.2e-89 330.9 206 84.5
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 2.1e-88 329.3 177 91.5
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 8.8e-87 323.9 179 88.8
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 1.5e-86 323.2 208 75.5
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 3.7e-85 318.5 210 82.4
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 8.2e-85 317.4 190 84.7
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 1.1e-84 317.0 208 81.2
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 7.5e-78 294.3 167 86.8
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 9.7e-78 293.9 156 93.6
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 4.1e-76 288.5 156 92.9
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 4.1e-76 288.5 205 73.7
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 7.0e-76 287.7 207 74.9
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 7.5e-70 267.7 211 70.1
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 1.8e-68 263.1 202 63.9
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 5.9e-67 258.1 203 62.6
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 1.3e-66 256.9 206 67.5
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 1.2e-64 250.4 200 59.5
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 1.6e-64 250.0 168 79.8
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 1.8e-63 246.5 199 61.3
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 7.8e-59 231.1 206 53.9
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 2.9e-58 229.2 120 94.2
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 2.9e-58 229.2 133 90.2
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 1.1e-52 210.7 151 74.8
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 1.4e-52 210.3 148 73.6
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 1.4e-52 210.3 207 51.7
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 6.0e-51 204.9 207 52.7
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 6.6e-50 201.4 198 49.0
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 2.8e-48 196.1 209 55.5
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 3.4e-46 189.1 196 46.4
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 9.2e-44 181.0 160 65.6
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 2.5e-41 172.9 231 42.0
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 7.3e-41 171.4 208 51.4
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 4.7e-40 168.7 98 84.7
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 5.6e-33 145.2 206 46.1
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 2.8e-32 142.9 96 80.2
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 1.1e-31 141.0 99 74.7
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 1.8e-31 140.2 187 39.0
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.4e-28 130.6 74 86.5
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 3.2e-28 129.4 135 57.0
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 4.2e-28 129.0 92 72.8
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 3.5e-27 125.9 83 74.7
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 3.3e-25 119.4 60 90.0
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 5.3e-23 112.1 82 69.5
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 2.0e-22 110.2 73 79.5
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 9.9e-22 107.8 60 88.3
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 4.9e-13 79.0 61 63.9
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 1.6e-11 73.9 62 69.4
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 3.3e-09 66.2 39 76.9
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 3.7e-08 62.8 58 67.2
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 3.1e-07 59.7 38 71.1
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 2.0e-06 57.0 137 25.5


User provided reference genes

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