Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G011400 Manihot esculenta HOM05D005988 ORTHO05D007392 2.5e-49 198.4 92 100.0
Manes.13G012300 Manihot esculenta HOM05D005988 ORTHO05D007392 1.4e-47 192.6 92 94.6
Potri.001G055400 Populus trichocarpa HOM05D005988 ORTHO05D007392 3.3e-46 188.0 92 92.4
Sabra01G0040000 Salix brachista HOM05D005988 ORTHO05D007392 2.2e-45 185.3 90 92.2
Potri.003G173000 Populus trichocarpa HOM05D005988 ORTHO05D007392 3.7e-45 184.5 92 91.3
Sabra03G0126500 Salix brachista HOM05D005988 ORTHO05D007392 4.8e-45 184.1 92 90.2
CiPaw.05G109900 Carya illinoinensis HOM05D005988 ORTHO05D007392 1.4e-44 182.6 92 88.0
Cfa009369 Carpinus fangiana HOM05D005988 ORTHO05D007392 6.9e-44 180.3 92 87.0
Haze_12418 Corylus avellana HOM05D005988 ORTHO05D007392 6.9e-44 180.3 92 87.0
Eucgr.B03491 Eucalyptus grandis HOM05D005988 ORTHO05D007392 9.1e-44 179.9 92 87.0
CANSAT01G3258 Cannabis sativa HOM05D005988 ORTHO05D007392 2.0e-43 178.7 87 90.8
Gohir.D02G149200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 3.4e-43 177.9 89 88.8
Gorai.005G167100 Gossypium raimondii HOM05D005988 ORTHO05D007392 3.4e-43 177.9 89 88.8
Gohir.A03G126200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 4.5e-43 177.6 89 88.8
Hma1.2p1_0065F.1_g035500 Hydrangea macrophylla HOM05D005988 ORTHO05D007392 5.9e-43 177.2 85 91.8
ClCG11G013680 Citrullus lanatus HOM05D005988 ORTHO05D007392 1.0e-42 176.4 92 83.7
Thecc.02G210500 Theobroma cacao HOM05D005988 ORTHO05D007392 2.9e-42 174.9 87 87.4
PGR102G1123 Punica granatum HOM05D005988 ORTHO05D007392 8.5e-42 173.3 92 82.6
Cpa.g.sc43.58 Carica papaya HOM05D005988 ORTHO05D007392 1.1e-41 172.9 87 88.5
COL.COLO4_20400 Corchorus olitorius HOM05D005988 ORTHO05D007392 1.4e-41 172.6 87 87.4
Nn4g22324 Nelumbo nucifera HOM05D005988 ORTHO05D007392 1.9e-41 172.2 87 86.2
CSS0025775 Camellia sinensis var. sinensis HOM05D005988 ORTHO05D007392 4.2e-41 171.0 88 84.1
Glyma.05G147302 Glycine max HOM05D005988 ORTHO05D007392 7.2e-41 170.2 92 82.6
MBI01_g01248_MAGBIO Magnolia biondii HOM05D005988 ORTHO05D007392 7.2e-41 170.2 86 87.2
Phvul.L002046 Phaseolus vulgaris HOM05D005988 ORTHO05D007392 7.2e-41 170.2 92 82.6
vmacro01331 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 9.4e-41 169.9 90 84.4
vmacro05591 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 9.4e-41 169.9 90 84.4
vmacro23425 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 9.4e-41 169.9 90 84.4
Glyma.08G104300 Glycine max HOM05D005988 ORTHO05D007392 1.2e-40 169.5 92 81.5
Hund13388 Selenicereus undatus HOM05D005988 ORTHO05D007392 1.2e-40 169.5 86 87.2
CsaV3_5G030290 Cucumis sativus L. HOM05D005988 ORTHO05D007392 1.6e-40 169.1 92 79.3
Cc11_g16890 Coffea canephora HOM05D005988 ORTHO05D007392 2.1e-40 168.7 89 82.0
PSO017G5437 Papaver somniferum HOM05D005988 ORTHO05D007392 2.1e-40 168.7 85 85.9
Prupe.1G225900 Prunus persica HOM05D005988 ORTHO05D007392 2.1e-40 168.7 86 87.2
Rhsim04G0162300 Rhododendron simsii HOM05D005988 ORTHO05D007392 2.7e-40 168.3 90 83.3
TPR.G34164 Trifolium pratense HOM05D005988 ORTHO05D007392 2.7e-40 168.3 92 80.4
Atru.chr11.2323 Acer truncatum HOM05D005988 ORTHO05D007392 3.6e-40 167.9 87 85.1
Nitab4.5_0006506g0010 Nicotiana tabacum HOM05D005988 ORTHO05D007392 3.6e-40 167.9 92 81.5
Sed0026530 Sechium edule HOM05D005988 ORTHO05D007392 4.7e-40 167.5 85 88.2
RcHm_v2.0_Chr4g0430261 Rosa chinensis HOM05D005988 ORTHO05D007392 6.1e-40 167.2 86 86.0
Lj4g0004056 Lotus japonicus HOM05D005988 ORTHO05D007392 7.9e-40 166.8 92 80.4
Nitab4.5_0005361g0020 Nicotiana tabacum HOM05D005988 ORTHO05D007392 7.9e-40 166.8 92 80.4
MELO3C011867.2 Cucumis melo HOM05D005988 ORTHO05D007392 1.0e-39 166.4 85 85.9
Psat0s2314g0040 Pisum sativum HOM05D005988 ORTHO05D007392 1.0e-39 166.4 92 80.4
TPR.G17077 Trifolium pratense HOM05D005988 ORTHO05D007392 2.3e-39 165.2 90 80.0
CDE06G1110 Ceratophyllum demersum HOM05D005988 ORTHO05D007392 6.7e-39 163.7 86 81.4
ECA233G0411 Erigeron canadensis HOM05D005988 ORTHO05D007392 6.7e-39 163.7 87 82.8
GSVIVG01010482001 Vitis vinifera HOM05D005988 ORTHO05D007392 8.8e-39 163.3 87 80.5
Ca_18034_v3 Cicer arietinum L. HOM05D005988 ORTHO05D007392 1.1e-38 162.9 84 85.7
Duzib251G0426 Durio zibethinus HOM05D005988 ORTHO05D007392 1.1e-38 162.9 89 82.0
Aqoxy3G00796 Aquilegia oxysepala HOM05D005988 ORTHO05D007392 1.5e-38 162.5 85 83.5
arahy.Tifrunner.gnm1.ann1.NCU5C9 Arachis hypogaea HOM05D005988 ORTHO05D007392 1.5e-38 162.5 90 78.9
Duzib251G0424 Durio zibethinus HOM05D005988 ORTHO05D007392 1.5e-38 162.5 89 80.9
Rhsim12G0099600 Rhododendron simsii HOM05D005988 ORTHO05D007392 3.3e-38 161.4 90 80.0
DCAR_031202 Daucus carota HOM05D005988 ORTHO05D007392 4.4e-38 161.0 89 75.3
MD16G1119100 Malus domestica HOM05D005988 ORTHO05D007392 4.4e-38 161.0 82 86.6
FvH4_4g23770 Fragaria vesca HOM05D005988 ORTHO05D007392 5.7e-38 160.6 86 81.4
FAN07G1208 Fragaria x ananassa HOM05D005988 ORTHO05D007392 5.7e-38 160.6 86 81.4
FAN12G0190 Fragaria x ananassa HOM05D005988 ORTHO05D007392 5.7e-38 160.6 86 81.4
FAN17G2984 Fragaria x ananassa HOM05D005988 ORTHO05D007392 5.7e-38 160.6 86 81.4
Medtr8g080630 Medicago truncatula HOM05D005988 ORTHO05D007392 5.7e-38 160.6 83 83.1
Lalb_Chr07g0187141 Lupinus albus HOM05D005988 ORTHO05D007392 7.4e-38 160.2 91 75.8
PGSC0003DMG400017679 Solanum tuberosum HOM05D005988 ORTHO05D007392 7.4e-38 160.2 84 86.9
arahy.Tifrunner.gnm1.ann1.5IUK3V Arachis hypogaea HOM05D005988 ORTHO05D007392 1.3e-37 159.5 85 81.2
arahy.Tifrunner.gnm1.ann1.CH2TLP Arachis hypogaea HOM05D005988 ORTHO05D007392 1.3e-37 159.5 85 81.2
EL10Ac2g02768 Beta vulgaris HOM05D005988 ORTHO05D007392 1.3e-37 159.5 85 81.2
CAN.G875.9 Capsicum annuum HOM05D005988 ORTHO05D007392 2.2e-37 158.7 89 79.8
THA.LOC109117182 Tarenaya hassleriana HOM05D005988 ORTHO05D007392 2.8e-37 158.3 86 80.2
ATR0582G290 Amborella trichopoda HOM05D005988 ORTHO05D007392 3.7e-37 157.9 86 79.1
Solyc04g045620.3 Solanum lycopersicum HOM05D005988 ORTHO05D007392 3.7e-37 157.9 83 85.5
Sopen04g017580 Solanum pennellii HOM05D005988 ORTHO05D007392 3.7e-37 157.9 83 85.5
Lalb_Chr13g0294321 Lupinus albus HOM05D005988 ORTHO05D007392 4.8e-37 157.5 91 74.7
Sc15g0005560 Simmondsia chinensis HOM05D005988 ORTHO05D007392 6.3e-37 157.1 86 80.2
Sc15g0005760 Simmondsia chinensis HOM05D005988 ORTHO05D007392 6.3e-37 157.1 86 80.2
arahy.Tifrunner.gnm1.ann1.XY4E2W Arachis hypogaea HOM05D005988 ORTHO05D007392 1.1e-36 156.4 85 78.8
QL03p052764 Quercus lobata HOM05D005988 ORTHO05D007392 1.1e-36 156.4 88 79.5
CARHR059890 Cardamine hirsuta HOM05D005988 ORTHO05D007392 1.8e-36 155.6 90 74.4
AUR62034347 Chenopodium quinoa HOM05D005988 ORTHO05D007392 1.8e-36 155.6 84 79.8
HanXRQChr12g0372221 Helianthus annuus HOM05D005988 ORTHO05D007392 2.4e-36 155.2 81 82.7
FAN22G1192 Fragaria x ananassa HOM05D005988 ORTHO05D007392 3.1e-36 154.8 82 81.7
Nitab4.5_0000060g0090 Nicotiana tabacum HOM05D005988 ORTHO05D007392 3.1e-36 154.8 81 85.2
AL2G25900 Arabidopsis lyrata HOM05D005988 ORTHO05D007392 4.1e-36 154.5 90 73.3
AT1G67350 Arabidopsis thaliana HOM05D005988 ORTHO05D007392 4.1e-36 154.5 90 73.3
Carub.0002s1364 Capsella rubella HOM05D005988 ORTHO05D007392 4.1e-36 154.5 91 72.5
Aa31sc377G10 Aethionema arabicum HOM05D005988 ORTHO05D007392 5.3e-36 154.1 87 75.9
AUR62022358 Chenopodium quinoa HOM05D005988 ORTHO05D007392 7.0e-36 153.7 86 77.9
Actinidia08072 Actinidia chinensis HOM05D005988 ORTHO05D007392 1.6e-35 152.5 86 77.9
BcaB03g15204 Brassica carinata HOM05D005988 ORTHO05D007392 1.6e-35 152.5 89 74.2
Peaxi162Scf00038g00014 Petunia axillaris HOM05D005988 ORTHO05D007392 1.6e-35 152.5 89 76.4
Ah.10g030080 Amaranthus hybridus HOM05D005988 ORTHO05D007392 2.6e-35 151.8 81 79.0
Thhalv10019308m.g Eutrema salsugineum HOM05D005988 ORTHO05D007392 7.7e-35 150.2 92 71.7
BcaB05g24271 Brassica carinata HOM05D005988 ORTHO05D007392 1.0e-34 149.8 85 76.5
BcaB05g24277 Brassica carinata HOM05D005988 ORTHO05D007392 1.0e-34 149.8 85 76.5
BcaC08g46168 Brassica carinata HOM05D005988 ORTHO05D007392 1.0e-34 149.8 85 76.5
C06p42910 Brassica napus HOM05D005988 ORTHO05D007392 1.0e-34 149.8 85 76.5
Sp5g22300 Schrenkiella parvula HOM05D005988 ORTHO05D007392 1.3e-34 149.4 89 73.0
A07p33950 Brassica napus HOM05D005988 ORTHO05D007392 2.2e-34 148.7 85 75.3
BcaC03g14837 Brassica carinata HOM05D005988 ORTHO05D007392 2.9e-34 148.3 85 75.3
A02p14180 Brassica napus HOM05D005988 ORTHO05D007392 2.9e-34 148.3 85 75.3
C02p22980 Brassica napus HOM05D005988 ORTHO05D007392 2.9e-34 148.3 85 75.3
BraA02t06481Z Brassica rapa HOM05D005988 ORTHO05D007392 2.9e-34 148.3 85 75.3
MD13G1118900 Malus domestica HOM05D005988 ORTHO05D007392 1.5e-33 146.0 72 87.5
HPP92_012485 Vanilla planifolia HOM05D005988 ORTHO05D007392 2.7e-32 141.7 83 78.3
Zm00001eb422590 Zea mays HOM05D005988 ORTHO05D007392 8.0e-32 140.2 90 70.0
Zm00001eb290200 Zea mays HOM05D005988 ORTHO05D007392 1.4e-31 139.4 90 71.1
SalBow8G0976 Salvia bowleyana HOM05D005988 ORTHO05D007392 3.0e-31 138.3 85 74.1
Os03g0685900 Oryza sativa ssp. japonica HOM05D005988 ORTHO05D007392 5.2e-31 137.5 90 65.6
DCAR_024095 Daucus carota HOM05D005988 ORTHO05D007392 2.0e-30 135.6 81 69.1
Migut.E00018 Erythranthe guttata HOM05D005988 ORTHO05D007392 3.3e-30 134.8 85 72.9
unitig_62.g23652 Utricularia gibba HOM05D005988 ORTHO05D007392 3.3e-30 134.8 85 69.4
SGA_v2.0_scaffold144G35838 Striga asiatica HOM05D005988 ORTHO05D007392 9.7e-30 133.3 74 77.0
Lsat_1_v5_gn_7_95720 Lactuca sativa HOM05D005988 ORTHO05D007392 6.3e-29 130.6 72 72.2
TWI75G1041 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 6.3e-29 130.6 87 67.8
Lalb_Chr23g0278031 Lupinus albus HOM05D005988 ORTHO05D007392 3.1e-28 128.3 84 67.9
Lalb_Chr23g0278041 Lupinus albus HOM05D005988 ORTHO05D007392 9.1e-28 126.7 84 67.9
TWI18G1296 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 1.0e-26 123.2 87 62.1
Migut.G00897 Erythranthe guttata HOM05D005988 ORTHO05D007392 4.4e-22 107.8 70 71.4
Migut.O00848 Erythranthe guttata HOM05D005988 ORTHO05D007392 4.4e-22 107.8 70 71.4
CBR_g8533 Chara braunii HOM05D005988 ORTHO05D007392 1.7e-21 105.9 84 52.4
Nitab4.5_0001404g0080 Nicotiana tabacum HOM05D005988 ORTHO05D007392 1.4e-20 102.8 57 73.7
Pp3c3_5450 Physcomitrium patens HOM05D005988 ORTHO05D007392 2.0e-19 99.0 82 50.0
Mapoly0011s0010 Marchantia polymorpha HOM05D005988 ORTHO05D007392 2.7e-19 98.6 91 48.4
TAR629G1917 Trochodendron aralioides HOM05D000133 ORTHO05D002928 1.4e-15 86.3 42 83.3
AagrBONN_evm.TU.Sc2ySwM_117.535 Anthoceros agrestis HOM05D005988 ORTHO05D007392 1.2e-14 83.2 78 44.9
SMO356G0160 Selaginella moellendorffii HOM05D005988 ORTHO05D007392 2.2e-13 79.0 80 42.5
Actinidia30649 Actinidia chinensis HOM05D005988 ORTHO05D007392 6.6e-10 67.4 41 78.0
BcaB05g24274 Brassica carinata HOM05D005988 ORTHO05D007392 1.1e-09 66.6 86 45.3
arahy.Tifrunner.gnm1.ann1.BFR0IC Arachis hypogaea HOM05D005988 ORTHO05D007392 1.4e-07 59.7 56 51.8
Zm00001eb053260 Zea mays HOM05D005988 ORTHO05D007392 2.6e-06 55.5 36 72.2
Zm00001eb053240 Zea mays HOM05D005988 ORTHO05D007392 4.4e-06 54.7 36 69.4


User provided reference genes

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