Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G011100 Manihot esculenta HOM05D006087 ORTHO05D007479 1.2e-46 189.5 98 100.0
Thecc.02G208200 Theobroma cacao HOM05D006087 ORTHO05D007479 5.9e-41 170.6 99 90.9
Lalb_Chr12g0206161 Lupinus albus HOM05D006087 ORTHO05D007479 1.0e-40 169.9 98 83.7
COL.COLO4_20404 Corchorus olitorius HOM05D006087 ORTHO05D007479 1.3e-40 169.5 99 89.9
Phvul.001G262000 Phaseolus vulgaris HOM05D006087 ORTHO05D007479 1.7e-40 169.1 98 84.7
Atru.chr11.2326 Acer truncatum HOM05D006087 ORTHO05D007479 2.2e-40 168.7 98 82.7
Glyma.18G006400 Glycine max HOM05D006087 ORTHO05D007479 2.2e-40 168.7 96 86.5
Duzib251G0251 Durio zibethinus HOM05D006087 ORTHO05D007479 2.9e-40 168.3 96 90.6
THA.LOC104812595 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 3.8e-40 167.9 98 82.7
Glyma.11G250700 Glycine max HOM05D006087 ORTHO05D007479 5.0e-40 167.5 96 85.4
Gohir.D04G182800 Gossypium hirsutum HOM05D006087 ORTHO05D007479 8.5e-40 166.8 99 86.9
Gorai.012G175800 Gossypium raimondii HOM05D006087 ORTHO05D007479 8.5e-40 166.8 99 86.9
TWI75G0102 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 1.4e-39 166.0 97 82.5
A06p47950 Brassica napus HOM05D006087 ORTHO05D007479 5.5e-39 164.1 97 81.4
C07p25860 Brassica napus HOM05D006087 ORTHO05D007479 5.5e-39 164.1 97 81.4
BolC7t43103H Brassica oleracea HOM05D006087 ORTHO05D007479 5.5e-39 164.1 97 81.4
BraA06t27665Z Brassica rapa HOM05D006087 ORTHO05D007479 5.5e-39 164.1 97 81.4
Ciclev10033174m.g Citrus clementina HOM05D006087 ORTHO05D007479 5.5e-39 164.1 98 80.6
TWI18G0911 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 7.2e-39 163.7 97 81.4
TAR374G1631 Trochodendron aralioides HOM05D006087 ORTHO05D007479 7.2e-39 163.7 98 79.6
AT5G43260 Arabidopsis thaliana HOM05D006087 ORTHO05D007479 9.4e-39 163.3 96 80.2
Eucgr.B03495 Eucalyptus grandis HOM05D006087 ORTHO05D007479 9.4e-39 163.3 96 83.3
AL8G17230 Arabidopsis lyrata HOM05D006087 ORTHO05D007479 1.2e-38 162.9 96 79.2
Gohir.A04G139600 Gossypium hirsutum HOM05D006087 ORTHO05D007479 1.6e-38 162.5 99 84.8
Gohir.D12G152800 Gossypium hirsutum HOM05D006087 ORTHO05D007479 1.6e-38 162.5 96 82.3
Gorai.008G165300 Gossypium raimondii HOM05D006087 ORTHO05D007479 1.6e-38 162.5 96 82.3
Ah.03g136140 Amaranthus hybridus HOM05D006087 ORTHO05D007479 2.1e-38 162.2 97 79.4
Sc04g0010140 Simmondsia chinensis HOM05D006087 ORTHO05D007479 2.1e-38 162.2 98 84.7
Sp2g08050 Schrenkiella parvula HOM05D006087 ORTHO05D007479 2.7e-38 161.8 97 79.4
Gohir.A12G148826 Gossypium hirsutum HOM05D006087 ORTHO05D007479 3.6e-38 161.4 96 84.4
MD13G1119200 Malus domestica HOM05D006087 ORTHO05D007479 3.6e-38 161.4 97 82.5
Duzib248G0070 Durio zibethinus HOM05D006087 ORTHO05D007479 6.1e-38 160.6 99 79.8
Carub.0008s0544 Capsella rubella HOM05D006087 ORTHO05D007479 2.3e-37 158.7 97 79.4
CARHR180610 Cardamine hirsuta HOM05D006087 ORTHO05D007479 3.0e-37 158.3 96 82.3
Cfa009371 Carpinus fangiana HOM05D006087 ORTHO05D007479 6.7e-37 157.1 98 81.6
Haze_12421 Corylus avellana HOM05D006087 ORTHO05D007479 6.7e-37 157.1 98 81.6
Lj4g0011842 Lotus japonicus HOM05D006087 ORTHO05D007479 6.7e-37 157.1 97 81.4
BcaC04g21941 Brassica carinata HOM05D006087 ORTHO05D007479 1.1e-36 156.4 97 76.3
C09p25630 Brassica napus HOM05D006087 ORTHO05D007479 1.1e-36 156.4 97 76.3
BolC9t55466H Brassica oleracea HOM05D006087 ORTHO05D007479 1.1e-36 156.4 97 76.3
EL10Ac6g13503 Beta vulgaris HOM05D006087 ORTHO05D007479 1.5e-36 156.0 92 81.5
BraA09t37633Z Brassica rapa HOM05D006087 ORTHO05D007479 1.5e-36 156.0 97 76.3
MELO3C011864.2 Cucumis melo HOM05D006087 ORTHO05D007479 2.0e-36 155.6 97 77.3
TAR622G0081 Trochodendron aralioides HOM05D006087 ORTHO05D007479 2.0e-36 155.6 100 76.0
A09p20220 Brassica napus HOM05D006087 ORTHO05D007479 2.5e-36 155.2 97 76.3
QL03p052667 Quercus lobata HOM05D006087 ORTHO05D007479 2.5e-36 155.2 97 80.4
Aa31LG9G13330 Aethionema arabicum HOM05D006087 ORTHO05D007479 4.3e-36 154.5 96 79.2
CiPaw.05G109600 Carya illinoinensis HOM05D006087 ORTHO05D007479 4.3e-36 154.5 98 74.5
Cc11_g16920 Coffea canephora HOM05D006087 ORTHO05D007479 4.3e-36 154.5 100 78.0
CiPaw.06G102800 Carya illinoinensis HOM05D006087 ORTHO05D007479 5.7e-36 154.1 98 78.6
MD16G1119600 Malus domestica HOM05D006087 ORTHO05D007479 5.7e-36 154.1 97 76.3
TWI36G1569 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 9.7e-36 153.3 95 75.8
BcaB07g31021 Brassica carinata HOM05D006087 ORTHO05D007479 1.3e-35 152.9 97 74.2
CsaV3_5G030260 Cucumis sativus L. HOM05D006087 ORTHO05D007479 1.3e-35 152.9 97 76.3
Ah.02g130900 Amaranthus hybridus HOM05D006087 ORTHO05D007479 1.7e-35 152.5 92 77.2
Ca_16458_v3 Cicer arietinum L. HOM05D006087 ORTHO05D007479 1.7e-35 152.5 98 79.6
Duzib268G0474 Durio zibethinus HOM05D006087 ORTHO05D007479 1.7e-35 152.5 99 81.8
Oeu036868.1 Olea europaea HOM05D006087 ORTHO05D007479 3.7e-35 151.4 100 76.0
TPR.G17782 Trifolium pratense HOM05D006087 ORTHO05D007479 3.7e-35 151.4 98 77.6
FAN07G1634 Fragaria x ananassa HOM05D006087 ORTHO05D007479 8.2e-35 150.2 95 74.7
FAN17G2012 Fragaria x ananassa HOM05D006087 ORTHO05D007479 8.2e-35 150.2 95 74.7
FAN22G0702 Fragaria x ananassa HOM05D006087 ORTHO05D007479 8.2e-35 150.2 95 74.7
Medtr3g085300 Medicago truncatula HOM05D006087 ORTHO05D007479 8.2e-35 150.2 99 77.8
CANSAT01G2640 Cannabis sativa HOM05D006087 ORTHO05D007479 1.1e-34 149.8 100 81.0
Cpa.g.sc43.59 Carica papaya HOM05D006087 ORTHO05D007479 1.8e-34 149.1 98 80.6
Lsat_1_v5_gn_4_3481 Lactuca sativa HOM05D006087 ORTHO05D007479 1.8e-34 149.1 102 74.5
Prupe.1G225600 Prunus persica HOM05D006087 ORTHO05D007479 1.8e-34 149.1 97 76.3
FAN12G1341 Fragaria x ananassa HOM05D006087 ORTHO05D007479 2.4e-34 148.7 95 73.7
FAN12G1854 Fragaria x ananassa HOM05D006087 ORTHO05D007479 2.4e-34 148.7 95 73.7
Solyc05g015470.1 Solanum lycopersicum HOM05D006087 ORTHO05D007479 2.4e-34 148.7 97 79.4
Sopen05g010780 Solanum pennellii HOM05D006087 ORTHO05D007479 2.4e-34 148.7 97 79.4
Actinidia20712 Actinidia chinensis HOM05D006087 ORTHO05D007479 4.1e-34 147.9 98 73.5
Psat5g096360 Pisum sativum HOM05D006087 ORTHO05D007479 4.1e-34 147.9 98 77.6
PSO017G6027 Papaver somniferum HOM05D006087 ORTHO05D007479 5.3e-34 147.5 96 74.0
PSO478G2574 Papaver somniferum HOM05D006087 ORTHO05D007479 5.3e-34 147.5 96 74.0
RcHm_v2.0_Chr4g0430231 Rosa chinensis HOM05D006087 ORTHO05D007479 5.3e-34 147.5 95 73.7
SGA_v2.0_scaffold9G04680 Striga asiatica HOM05D006087 ORTHO05D007479 5.3e-34 147.5 102 72.5
Potri.001G056601 Populus trichocarpa HOM05D006087 ORTHO05D007479 6.9e-34 147.1 98 76.5
PGSC0003DMG400014051 Solanum tuberosum HOM05D006087 ORTHO05D007479 1.2e-33 146.4 97 78.4
Oeu004448.1 Olea europaea HOM05D006087 ORTHO05D007479 1.5e-33 146.0 100 76.0
Hma1.2p1_0065F.1_g035460 Hydrangea macrophylla HOM05D006087 ORTHO05D007479 2.6e-33 145.2 100 76.0
Potri.003G171800 Populus trichocarpa HOM05D006087 ORTHO05D007479 4.5e-33 144.4 96 80.2
THA.LOC104820522 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 7.7e-33 143.7 98 76.5
CAN.G163.9 Capsicum annuum HOM05D006087 ORTHO05D007479 2.9e-32 141.7 102 71.6
unitig_749.g13305 Utricularia gibba HOM05D006087 ORTHO05D007479 3.8e-32 141.4 98 69.4
PGR102G3303 Punica granatum HOM05D006087 ORTHO05D007479 4.2e-31 137.9 96 77.1
HanXRQChr10g0310621 Helianthus annuus HOM05D006087 ORTHO05D007479 1.2e-30 136.3 98 69.4
Lalb_Chr23g0278081 Lupinus albus HOM05D006087 ORTHO05D007479 1.6e-30 136.0 98 74.5
THA.LOC104807129 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 1.6e-30 136.0 103 70.9
THA.LOC104825505 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 1.6e-30 136.0 103 71.8
ATR0561G204 Amborella trichopoda HOM05D006087 ORTHO05D007479 2.1e-30 135.6 96 71.9
CDE02G3899 Ceratophyllum demersum HOM05D006087 ORTHO05D007479 2.1e-30 135.6 96 66.7
AUR62005621 Chenopodium quinoa HOM05D006087 ORTHO05D007479 3.6e-30 134.8 96 75.0
Rhsim12G0025700 Rhododendron simsii HOM05D006087 ORTHO05D007479 4.7e-30 134.4 101 72.3
Nitab4.5_0001808g0020 Nicotiana tabacum HOM05D006087 ORTHO05D007479 7.9e-30 133.7 97 73.2
AUR62028927 Chenopodium quinoa HOM05D006087 ORTHO05D007479 1.8e-29 132.5 96 75.0
Migut.K00735 Erythranthe guttata HOM05D006087 ORTHO05D007479 1.8e-29 132.5 100 71.0
Aqoxy5G03370 Aquilegia oxysepala HOM05D006087 ORTHO05D007479 3.0e-29 131.7 94 74.5
Nitab4.5_0000039g0180 Nicotiana tabacum HOM05D006087 ORTHO05D007479 3.9e-29 131.3 97 72.2
MELO3C010741.2 Cucumis melo HOM05D006087 ORTHO05D007479 2.6e-28 128.6 96 66.7
CSS0016505 Camellia sinensis var. sinensis HOM05D006087 ORTHO05D007479 3.3e-28 128.3 85 81.2
CSS0027394 Camellia sinensis var. sinensis HOM05D006087 ORTHO05D007479 3.3e-28 128.3 85 81.2
arahy.Tifrunner.gnm1.ann1.1Z01XL Arachis hypogaea HOM05D006087 ORTHO05D007479 2.2e-27 125.6 102 71.6
ECA234G0111 Erigeron canadensis HOM05D006087 ORTHO05D007479 3.7e-27 124.8 87 70.1
Mapoly0062s0032 Marchantia polymorpha HOM05D006087 ORTHO05D007479 2.4e-26 122.1 96 63.5
Migut.E00016 Erythranthe guttata HOM05D006087 ORTHO05D007479 3.1e-26 121.7 100 65.0
Sed0007875 Sechium edule HOM05D006087 ORTHO05D007479 7.0e-26 120.6 96 63.5
MBI11_g44422_MAGBIO Magnolia biondii HOM05D006087 ORTHO05D007479 9.1e-26 120.2 98 70.4
MSTRG.8005 Avicennia marina HOM05D006087 ORTHO05D007479 3.5e-25 118.2 97 67.0
MD05G1114700 Malus domestica HOM05D006087 ORTHO05D007479 4.5e-25 117.9 79 70.9
ClCG08G017160 Citrullus lanatus HOM05D006087 ORTHO05D007479 7.7e-25 117.1 96 65.6
ECA233G2512 Erigeron canadensis HOM05D006443 ORTHO05D007797 2.9e-24 115.2 82 67.1
CsaV3_2G025430 Cucumis sativus L. HOM05D006087 ORTHO05D007479 2.5e-23 112.1 79 75.9
Pp3c22_5660 Physcomitrium patens HOM05D006087 ORTHO05D007479 2.5e-23 112.1 100 58.0
Pp3c18_21810 Physcomitrium patens HOM05D006087 ORTHO05D007479 7.2e-23 110.5 102 58.8
MBI11_g05327_MAGBIO Magnolia biondii HOM05D006087 ORTHO05D007479 3.6e-22 108.2 68 79.4
Pp3c21_520 Physcomitrium patens HOM05D006087 ORTHO05D007479 1.4e-21 106.3 94 56.4
Pp3c14_11460 Physcomitrium patens HOM05D006087 ORTHO05D007479 8.8e-21 103.6 101 54.5
HPP92_024307 Vanilla planifolia HOM05D006087 ORTHO05D007479 1.3e-19 99.8 96 59.4
HPP92_024290 Vanilla planifolia HOM05D006087 ORTHO05D007479 2.2e-19 99.0 97 59.8
Pp3c17_7480 Physcomitrium patens HOM05D006087 ORTHO05D007479 5.9e-17 90.9 99 48.5
Hma1.2p1_0349F.1_g132260 Hydrangea macrophylla HOM05D006087 ORTHO05D007479 2.2e-16 89.0 98 55.1
Os02g0506600 Oryza sativa ssp. japonica HOM05D006087 ORTHO05D007479 2.7e-14 82.0 100 49.0
Zm00001eb241730 Zea mays HOM05D006087 ORTHO05D007479 6.1e-14 80.9 95 48.4
Zm00001eb180950 Zea mays HOM05D006087 ORTHO05D007479 4.0e-13 78.2 100 48.0
MD16G1189100 Malus domestica HOM05D006087 ORTHO05D007479 4.4e-12 74.7 40 80.0
Cre10.g432100 Chlamydomonas reinhardtii HOM05D006087 ORTHO05D007479 1.6e-09 66.2 88 40.9
CDE05G3495 Ceratophyllum demersum HOM05D006087 ORTHO05D007479 2.2e-08 62.4 56 57.1
Zm00001eb421040 Zea mays HOM05D006087 ORTHO05D007479 3.8e-08 61.6 101 41.6
Oeu016235.1 Olea europaea HOM05D006087 ORTHO05D007479 4.7e-06 54.7 51 60.8
Zm00001eb421020 Zea mays HOM05D036862 ORTHO05D037215 8.0e-06 53.9 111 35.1


User provided reference genes

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