Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 4.8e-144 514.6 286 100.0
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 3.4e-129 465.3 286 89.5
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 1.7e-128 463.0 285 90.5
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.4e-127 459.9 286 88.1
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 2.7e-126 455.7 285 87.7
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 4.5e-126 454.9 286 87.8
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 4.5e-126 454.9 285 90.2
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 1.0e-125 453.8 239 89.1
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 2.3e-125 452.6 288 87.2
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 2.9e-125 452.2 285 88.8
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 5.0e-125 451.4 285 86.7
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 1.5e-124 449.9 285 89.1
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 2.5e-124 449.1 306 84.0
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 9.5e-124 447.2 286 87.8
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 2.1e-123 446.0 286 88.5
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 8.0e-123 444.1 286 86.0
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 1.8e-122 443.0 296 83.4
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 4.0e-122 441.8 285 87.4
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 6.8e-122 441.0 285 84.9
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 6.8e-122 441.0 286 85.7
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 6.8e-122 441.0 286 85.7
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 6.8e-122 441.0 285 86.3
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 3.4e-121 438.7 286 83.9
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 7.5e-121 437.6 286 84.6
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 1.3e-120 436.8 286 84.3
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 1.3e-120 436.8 286 85.0
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 2.2e-120 436.0 286 88.1
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 4.9e-120 434.9 286 87.1
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 1.4e-119 433.3 286 83.9
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.4e-119 433.3 286 85.3
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.8e-119 433.0 285 83.9
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 1.8e-119 433.0 285 83.9
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 2.4e-119 432.6 285 83.9
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 7.0e-119 431.0 286 83.6
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 9.2e-119 430.6 285 82.5
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 2.7e-118 429.1 287 84.7
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 4.6e-118 428.3 285 82.1
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 1.3e-117 426.8 285 83.5
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 2.3e-117 426.0 286 82.5
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 3.9e-117 425.2 289 84.4
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 9.5e-116 420.6 287 84.0
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 3.6e-115 418.7 288 82.3
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 4.7e-115 418.3 285 83.2
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 4.7e-115 418.3 286 80.1
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 8.0e-115 417.5 267 87.6
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 1.0e-114 417.2 286 81.1
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 2.3e-114 416.0 285 83.9
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.6e-113 412.5 286 81.5
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 3.4e-113 412.1 286 79.7
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 1.7e-112 409.8 285 82.5
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.9e-112 409.1 283 81.3
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 4.9e-112 408.3 289 81.7
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 1.1e-111 407.1 285 79.6
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 2.4e-111 406.0 285 80.7
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 7.0e-111 404.4 289 81.3
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 1.6e-110 403.3 286 80.8
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 2.7e-110 402.5 286 80.4
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 2.7e-110 402.5 286 80.8
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 6.0e-110 401.4 231 82.7
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 7.8e-110 401.0 241 79.7
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 2.3e-109 399.4 289 79.6
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 5.0e-109 398.3 288 79.9
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 1.1e-108 397.1 284 80.3
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 2.5e-108 396.0 292 79.5
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 5.6e-108 394.8 285 79.3
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 5.6e-108 394.8 242 79.3
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 1.2e-107 393.7 285 77.9
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 3.6e-107 392.1 285 80.0
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 8.1e-107 391.0 286 77.6
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 8.1e-107 391.0 210 89.5
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 1.4e-106 390.2 286 79.0
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 6.8e-106 387.9 286 77.6
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 1.5e-105 386.7 240 78.8
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.0e-105 386.3 239 78.2
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 2.6e-105 386.0 291 78.7
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 4.4e-105 385.2 289 77.2
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 4.4e-105 385.2 287 77.0
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 5.8e-105 384.8 242 76.9
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 7.5e-105 384.4 287 78.4
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.3e-104 383.6 288 75.3
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 2.2e-104 382.9 243 77.0
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 4.9e-104 381.7 285 78.6
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 8.3e-104 380.9 286 74.8
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 1.1e-103 380.6 245 76.3
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.4e-103 379.4 274 69.3
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 2.4e-103 379.4 286 76.6
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 3.2e-103 379.0 245 75.9
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 7.1e-103 377.9 243 76.5
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 1.2e-102 377.1 262 73.3
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 2.7e-102 375.9 342 67.3
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 5.1e-101 371.7 288 75.3
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 5.6e-100 368.2 240 74.6
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 1.1e-98 364.0 210 82.9
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 5.2e-98 361.7 287 72.8
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 8.9e-98 360.9 286 74.5
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 3.4e-97 359.0 245 74.3
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 1.3e-96 357.1 234 72.6
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 3.7e-96 355.5 242 73.6
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 4.1e-95 352.1 221 73.3
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 4.6e-94 348.6 268 76.9
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 3.0e-93 345.9 239 71.5
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 5.1e-93 345.1 239 70.3
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 1.1e-92 344.0 294 74.1
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 1.1e-92 344.0 231 87.4
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 3.3e-92 342.4 243 83.5
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 4.3e-92 342.0 286 72.0
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 9.6e-92 340.9 285 72.3
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 2.1e-91 339.7 294 73.5
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 1.1e-90 337.4 294 73.5
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 4.4e-89 332.0 249 70.7
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 6.4e-88 328.2 295 72.2
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 6.4e-88 328.2 246 70.7
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 6.4e-88 328.2 297 72.1
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 4.2e-87 325.5 229 83.8
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 4.2e-87 325.5 239 68.6
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 2.1e-86 323.2 246 69.9
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 1.0e-85 320.9 198 81.3
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 1.3e-85 320.5 285 69.5
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 6.6e-85 318.2 289 69.6
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 1.3e-83 313.9 232 68.5
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 1.8e-82 310.1 244 68.0
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 9.0e-82 307.8 239 65.3
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 3.9e-77 292.4 229 76.4
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 1.9e-76 290.0 196 71.9
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 1.6e-75 287.0 243 61.3
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 4.5e-73 278.9 217 65.4
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 7.1e-71 271.6 236 61.9
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 1.8e-69 266.9 238 61.8
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 3.0e-69 266.2 199 66.8
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 1.9e-68 263.5 243 57.6
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 4.6e-62 242.3 245 54.3
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 1.3e-48 197.6 245 62.0
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 5.0e-48 195.7 149 65.1
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 9.7e-44 181.4 131 68.7
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 2.3e-37 160.2 243 41.6
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 3.7e-35 152.9 244 42.6
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 2.9e-32 143.3 240 38.8
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 3.8e-32 142.9 253 38.3
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 2.3e-29 133.7 225 40.4
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 2.6e-28 130.2 224 39.3
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 9.7e-28 128.3 184 46.2
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 3.7e-27 126.3 223 40.4
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 4.8e-27 125.9 227 37.4
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.4e-26 124.4 225 36.0
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 2.4e-26 123.6 233 36.5
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 1.2e-25 121.3 232 37.5
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 1.7e-24 117.5 244 34.0
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 2.2e-24 117.1 235 36.6
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.2e-24 117.1 233 36.5
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 6.5e-24 115.5 235 37.9
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 3.2e-23 113.2 228 36.4
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 4.2e-23 112.8 231 36.4
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 7.2e-23 112.1 252 31.0
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 1.2e-22 111.3 53 94.3
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 1.0e-21 108.2 232 37.1
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 1.8e-21 107.5 260 34.2
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 2.0e-20 104.0 212 36.3
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 4.5e-17 92.8 206 35.0
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 4.5e-17 92.8 206 35.9
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 2.9e-16 90.1 56 71.4
Eucgr.L03169 Eucalyptus grandis HOM05D004124 ORTHO05D004779 5.0e-16 89.4 103 49.5
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 2.5e-15 87.0 53 71.7
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 3.2e-15 86.7 170 37.6
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 9.5e-15 85.1 46 82.6
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 9.5e-15 85.1 258 31.0
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 2.8e-14 83.6 244 29.9
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 2.3e-13 80.5 167 35.9
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 8.8e-13 78.6 160 35.6
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 1.2e-12 78.2 186 33.9
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 1.2e-09 68.2 257 26.5
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 2.0e-09 67.4 51 54.9
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.1e-07 61.6 37 64.9
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 5.6e-07 59.3 168 31.0
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 9.5e-07 58.5 58 44.8
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 3.6e-06 56.6 161 32.9


User provided reference genes

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