Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 2.2e-146 522.3 267 100.0
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 9.8e-115 417.2 267 81.6
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 2.8e-101 372.5 229 81.2
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 1.7e-98 363.2 229 79.9
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 2.2e-98 362.8 223 83.9
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 2.2e-98 362.8 228 80.3
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 5.4e-97 358.2 230 78.3
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 3.5e-96 355.5 228 76.8
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 3.5e-96 355.5 228 78.1
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 7.8e-96 354.4 239 74.9
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 1.3e-95 353.6 228 77.6
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 1.7e-95 353.2 228 76.3
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 5.1e-95 351.7 228 76.8
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 1.1e-94 350.5 228 76.8
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 1.5e-94 350.1 228 75.9
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 1.9e-94 349.7 224 77.7
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 2.5e-94 349.4 230 76.5
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 2.5e-94 349.4 223 77.6
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 7.3e-94 347.8 228 75.9
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 9.5e-94 347.4 228 76.3
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 1.2e-93 347.1 223 78.5
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 1.2e-93 347.1 224 75.9
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.6e-93 346.7 229 76.0
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 2.1e-93 346.3 228 76.8
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 3.6e-93 345.5 233 73.8
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 6.2e-93 344.7 223 78.5
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 8.1e-93 344.4 224 75.9
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.1e-92 344.0 235 73.6
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 1.4e-92 343.6 228 75.9
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 2.3e-92 342.8 223 78.0
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 2.3e-92 342.8 223 76.7
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 2.3e-92 342.8 224 75.4
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 3.1e-92 342.4 218 77.5
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 3.1e-92 342.4 224 75.0
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 4.0e-92 342.0 233 74.7
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 4.0e-92 342.0 218 78.0
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 5.2e-92 341.7 223 74.0
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 5.2e-92 341.7 223 76.7
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 5.2e-92 341.7 228 73.2
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 8.9e-92 340.9 228 75.0
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 1.2e-91 340.5 223 75.8
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 1.2e-91 340.5 229 72.9
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.2e-91 340.5 234 73.5
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 1.5e-91 340.1 225 74.2
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 2.6e-91 339.3 223 73.1
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 2.6e-91 339.3 224 75.4
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 3.4e-91 339.0 224 75.4
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 3.4e-91 339.0 228 74.6
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 5.8e-91 338.2 234 71.8
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 5.8e-91 338.2 232 73.7
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 7.6e-91 337.8 229 74.7
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 7.6e-91 337.8 224 77.7
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 9.9e-91 337.4 223 76.2
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 9.9e-91 337.4 229 74.7
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 9.9e-91 337.4 228 73.7
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 9.9e-91 337.4 223 76.2
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 1.7e-90 336.7 229 73.8
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 2.9e-90 335.9 223 75.8
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 2.9e-90 335.9 223 73.5
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 4.9e-90 335.1 228 73.7
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 8.4e-90 334.3 227 72.2
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 1.1e-89 334.0 228 72.8
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 1.1e-89 334.0 230 75.7
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 1.4e-89 333.6 229 72.9
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 1.9e-89 333.2 226 71.2
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 2.4e-89 332.8 228 71.1
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 2.4e-89 332.8 223 74.9
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 3.2e-89 332.4 223 74.0
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 7.1e-89 331.3 224 75.9
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 9.2e-89 330.9 228 73.7
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 9.2e-89 330.9 228 71.1
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 9.2e-89 330.9 222 72.5
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 1.6e-88 330.1 229 71.6
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 4.6e-88 328.6 228 72.4
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 4.6e-88 328.6 223 73.5
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 6.0e-88 328.2 229 70.7
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 7.8e-88 327.8 223 70.4
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 7.8e-88 327.8 230 72.2
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 1.0e-87 327.4 229 69.4
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 1.0e-87 327.4 223 74.0
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 1.3e-87 327.0 223 72.2
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 2.3e-87 326.2 224 72.8
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 3.0e-87 325.9 259 66.8
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 5.1e-87 325.1 224 72.3
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 5.1e-87 325.1 228 71.5
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 6.6e-87 324.7 225 70.7
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 8.6e-87 324.3 223 73.1
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 8.6e-87 324.3 223 73.1
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 2.5e-86 322.8 197 81.7
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 3.3e-86 322.4 223 72.6
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 3.3e-86 322.4 230 71.3
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 3.3e-86 322.4 223 72.6
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 4.3e-86 322.0 230 70.9
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 7.3e-86 321.2 228 69.7
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 7.3e-86 321.2 223 71.7
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 9.6e-86 320.9 224 71.9
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 9.6e-86 320.9 230 67.8
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 4.7e-85 318.5 229 68.6
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 8.1e-85 317.8 228 70.6
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 8.1e-85 317.8 202 78.2
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 1.8e-84 316.6 215 72.6
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.8e-84 316.6 228 69.7
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 3.1e-84 315.8 215 72.6
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 5.2e-84 315.1 215 72.1
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 6.8e-84 314.7 215 71.6
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 1.2e-83 313.9 215 71.6
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 1.5e-83 313.5 215 72.1
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 1.5e-83 313.5 228 68.9
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 2.0e-83 313.2 229 68.1
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 4.4e-83 312.0 228 67.5
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 4.9e-82 308.5 224 68.8
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.9e-81 306.6 213 70.9
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 1.2e-80 303.9 226 64.2
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.5e-80 302.4 228 68.9
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 7.8e-80 301.2 214 70.1
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 5.1e-79 298.5 195 75.9
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.5e-78 297.0 310 52.3
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 2.5e-78 296.2 226 62.8
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 9.6e-78 294.3 204 72.5
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 1.6e-77 293.5 207 73.4
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 6.2e-77 291.6 203 72.4
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 1.1e-76 290.8 230 64.3
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 1.8e-76 290.0 224 67.0
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 4.0e-76 288.9 228 65.4
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 5.3e-76 288.5 231 64.1
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 1.2e-72 277.3 213 66.2
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 1.0e-71 274.2 191 71.7
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 1.8e-68 263.5 181 74.0
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 2.7e-64 249.6 234 59.0
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 1.6e-61 240.4 222 56.8
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 2.4e-60 236.5 223 55.2
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 1.5e-59 233.8 147 78.2
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 2.0e-59 233.4 133 86.5
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 2.0e-59 233.4 182 65.4
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 4.2e-57 225.7 210 55.2
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 6.0e-56 221.9 209 52.6
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 7.9e-56 221.5 213 55.9
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 7.4e-54 214.9 144 73.6
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 9.0e-52 208.0 170 66.5
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.9e-50 203.0 124 81.5
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 9.3e-49 198.0 144 68.8
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 3.9e-47 192.6 133 70.7
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 3.7e-45 186.0 133 69.9
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 2.6e-43 179.9 143 62.2
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 3.2e-41 172.9 134 67.2
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 1.6e-40 170.6 141 58.9
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 4.6e-40 169.1 119 71.4
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 3.3e-38 162.9 146 60.3
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 5.7e-38 162.2 191 46.6
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 2.9e-34 149.8 187 43.3
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 1.4e-33 147.5 126 61.9
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 4.2e-33 146.0 85 83.5
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 2.7e-32 143.3 236 39.8
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 3.6e-32 142.9 127 58.3
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.0e-31 141.4 132 58.3
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 2.6e-30 136.7 89 74.2
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 9.7e-30 134.8 97 70.1
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 2.8e-29 133.3 109 63.3
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 4.8e-29 132.5 102 63.7
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 8.2e-29 131.7 116 60.3
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 3.1e-28 129.8 102 66.7
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 1.0e-26 124.8 87 70.1
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 2.5e-25 120.2 82 73.2
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 5.5e-25 119.0 85 65.9
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 7.2e-25 118.6 93 68.8
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 6.1e-24 115.5 69 81.2
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 1.8e-23 114.0 95 64.2
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 1.8e-23 114.0 71 76.1
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 5.7e-22 109.0 77 71.4
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 1.7e-21 107.5 86 62.8
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 7.0e-20 102.1 87 58.6
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 2.9e-18 96.7 51 88.2
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 3.8e-18 96.3 121 48.8
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 5.0e-18 95.9 102 52.9
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 1.5e-17 94.4 85 58.8
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 1.2e-16 91.3 61 68.9
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 4.7e-16 89.4 69 65.2
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 8.0e-16 88.6 182 31.9
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 4.0e-15 86.3 219 30.6
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 1.8e-12 77.4 60 63.3
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 3.8e-10 69.7 49 65.3
Cre13.g586250 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 5.0e-10 69.3 187 28.9
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 4.2e-09 66.2 67 47.8


User provided reference genes

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