Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G005400 Manihot esculenta HOM05D007881 ORTHO05D009922 2.2e-32 141.7 74 100.0
Ciclev10033256m.g Citrus clementina HOM05D007881 ORTHO05D009922 1.0e-21 106.3 73 75.3
COL.COLO4_38031 Corchorus olitorius HOM05D007881 ORTHO05D009922 1.9e-20 102.1 75 74.7
Thecc.05G194300 Theobroma cacao HOM05D007881 ORTHO05D009922 3.3e-20 101.3 75 73.3
TWI36G1222 Tripterygium wilfordii HOM05D007881 ORTHO05D009922 9.6e-20 99.8 75 66.7
Sabra15G0148100 Salix brachista HOM05D007881 ORTHO05D009922 1.3e-19 99.4 73 69.9
Gohir.A05G392600 Gossypium hirsutum HOM05D007881 ORTHO05D009922 4.8e-19 97.4 75 70.7
Gohir.D04G024500 Gossypium hirsutum HOM05D007881 ORTHO05D009922 4.8e-19 97.4 75 70.7
Gorai.012G027000 Gossypium raimondii HOM05D007881 ORTHO05D009922 4.8e-19 97.4 75 70.7
Potri.012G134200 Populus trichocarpa HOM05D007881 ORTHO05D009922 1.5e-17 92.4 78 67.9
Atru.chr6.1889 Acer truncatum HOM05D007881 ORTHO05D009922 2.6e-17 91.7 75 64.0
Potri.015G136500 Populus trichocarpa HOM05D007881 ORTHO05D009922 4.9e-16 87.4 76 63.2
Prupe.6G361800 Prunus persica HOM05D007881 ORTHO05D009922 4.9e-16 87.4 77 63.6
PGR119G1449 Punica granatum HOM05D007881 ORTHO05D009922 4.9e-16 87.4 67 67.2
Cpa.g.sc9.142 Carica papaya HOM05D007881 ORTHO05D009922 1.1e-15 86.3 73 63.0
CiPaw.07G080900 Carya illinoinensis HOM05D007881 ORTHO05D009922 1.1e-15 86.3 71 66.2
MD04G1245200 Malus domestica HOM05D007881 ORTHO05D009922 1.2e-14 82.8 77 59.7
Sp1g04830 Schrenkiella parvula HOM05D007881 ORTHO05D009922 2.1e-14 82.0 77 59.7
GSVIVG01019086001 Vitis vinifera HOM05D007881 ORTHO05D009922 3.5e-14 81.3 71 60.6
BraA08t35524Z Brassica rapa HOM05D007881 ORTHO05D009922 3.0e-13 78.2 78 57.7
A08p36200 Brassica napus HOM05D007881 ORTHO05D009922 3.9e-13 77.8 74 56.8
MD12G1086700 Malus domestica HOM05D007881 ORTHO05D009922 3.9e-13 77.8 73 60.3
Phvul.005G031800 Phaseolus vulgaris HOM05D007881 ORTHO05D009922 5.1e-13 77.4 62 66.1
AL1G15960 Arabidopsis lyrata HOM05D007881 ORTHO05D009922 6.7e-13 77.0 80 55.0
CARHR005530 Cardamine hirsuta HOM05D007881 ORTHO05D009922 6.7e-13 77.0 68 58.8
AUR62000305 Chenopodium quinoa HOM05D007881 ORTHO05D009922 6.7e-13 77.0 74 56.8
BcaC07g36818 Brassica carinata HOM05D007881 ORTHO05D009922 8.7e-13 76.6 74 55.4
Thhalv10009243m.g Eutrema salsugineum HOM05D007881 ORTHO05D009922 8.7e-13 76.6 74 54.1
BolC8t47025H Brassica oleracea HOM05D007881 ORTHO05D009922 1.1e-12 76.3 74 55.4
Actinidia03288 Actinidia chinensis HOM05D007881 ORTHO05D009922 2.5e-12 75.1 67 62.7
ClCG03G010640 Citrullus lanatus HOM05D007881 ORTHO05D009922 2.5e-12 75.1 73 58.9
Carub.0001s0535 Capsella rubella HOM05D007881 ORTHO05D009922 3.3e-12 74.7 80 52.5
QL12p018644 Quercus lobata HOM05D007881 ORTHO05D009922 3.3e-12 74.7 72 56.9
vmacro10404 Vaccinium macrocarpon HOM05D007881 ORTHO05D009922 4.3e-12 74.3 62 56.5
TAR362G1041 Trochodendron aralioides HOM05D007881 ORTHO05D009922 5.6e-12 73.9 52 67.3
Cc09_g03690 Coffea canephora HOM05D007881 ORTHO05D009922 9.6e-12 73.2 76 52.6
Eucgr.B01417 Eucalyptus grandis HOM05D007881 ORTHO05D009922 9.6e-12 73.2 75 54.7
Nitab4.5_0000083g0100 Nicotiana tabacum HOM05D007881 ORTHO05D009922 9.6e-12 73.2 75 56.0
Oeu034791.1 Olea europaea HOM05D007881 ORTHO05D009922 9.6e-12 73.2 54 64.8
AT1G06010 Arabidopsis thaliana HOM05D007881 ORTHO05D009922 1.3e-11 72.8 69 56.5
CSS0004298 Camellia sinensis var. sinensis HOM05D007881 ORTHO05D009922 1.3e-11 72.8 66 54.5
CsaV3_1G044490 Cucumis sativus L. HOM05D007881 ORTHO05D009922 1.3e-11 72.8 70 55.7
Nn7g37671 Nelumbo nucifera HOM05D007881 ORTHO05D009922 1.3e-11 72.8 52 67.3
CAN.G217.11 Capsicum annuum HOM05D007881 ORTHO05D009922 1.6e-11 72.4 76 56.6
THA.LOC109117253 Tarenaya hassleriana HOM05D007881 ORTHO05D009922 1.6e-11 72.4 71 56.3
arahy.Tifrunner.gnm1.ann1.FFCC7D Arachis hypogaea HOM05D007881 ORTHO05D009922 3.7e-11 71.2 66 56.1
arahy.Tifrunner.gnm1.ann1.X7CW9T Arachis hypogaea HOM05D007881 ORTHO05D009922 3.7e-11 71.2 66 56.1
BcaC07g42091 Brassica carinata HOM05D007881 ORTHO05D009922 3.7e-11 71.2 75 54.7
Sc16g0010420 Simmondsia chinensis HOM05D003813 ORTHO05D004557 3.7e-11 71.2 71 52.1
MELO3C010052.2 Cucumis melo HOM05D007881 ORTHO05D009922 8.1e-11 70.1 75 56.0
FAN02G0717 Fragaria x ananassa HOM05D007881 ORTHO05D009922 8.1e-11 70.1 70 51.4
Nitab4.5_0001435g0080 Nicotiana tabacum HOM05D007881 ORTHO05D009922 8.1e-11 70.1 73 53.4
Sopen04g025320 Solanum pennellii HOM05D000039 ORTHO05D000366 8.1e-11 70.1 76 53.9
Peaxi162Scf00048g00055 Petunia axillaris HOM05D007881 ORTHO05D009922 1.1e-10 69.7 73 54.8
SalBow1G5699 Salvia bowleyana HOM05D007881 ORTHO05D009922 1.4e-10 69.3 44 72.7
Solyc04g056425.1 Solanum lycopersicum HOM05D007881 ORTHO05D009922 1.8e-10 68.9 74 54.1
arahy.Tifrunner.gnm1.ann1.FG2V1D Arachis hypogaea HOM05D007881 ORTHO05D009922 2.4e-10 68.6 45 73.3
FvH4_6g00460 Fragaria vesca HOM05D007881 ORTHO05D009922 2.4e-10 68.6 70 48.6
AUR62006650 Chenopodium quinoa HOM05D007881 ORTHO05D009922 3.1e-10 68.2 74 51.4
Glyma.11G151200 Glycine max HOM05D007881 ORTHO05D009922 4.0e-10 67.8 44 77.3
Migut.F02122 Erythranthe guttata HOM05D007881 ORTHO05D009922 5.3e-10 67.4 54 59.3
BolC8t52672H Brassica oleracea HOM05D007881 ORTHO05D009922 9.0e-10 66.6 40 77.5
FAN09G3126 Fragaria x ananassa HOM05D007881 ORTHO05D009922 1.2e-09 66.2 70 47.1
Lalb_Chr25g0282841 Lupinus albus HOM05D007881 ORTHO05D009922 1.2e-09 66.2 74 54.1
Medtr3g032520 Medicago truncatula HOM05D007881 ORTHO05D009922 1.2e-09 66.2 42 66.7
ATR0215G006 Amborella trichopoda HOM05D007881 ORTHO05D009922 2.0e-09 65.5 59 55.9
C08p51460 Brassica napus HOM05D000559 ORTHO05D009922 2.0e-09 65.5 54 63.0
A09p67190 Brassica napus HOM05D007881 ORTHO05D009922 2.6e-09 65.1 54 63.0
Aqoxy3G03631 Aquilegia oxysepala HOM05D007881 ORTHO05D009922 4.5e-09 64.3 42 69.0
RcHm_v2.0_Chr3g0447831 Rosa chinensis HOM05D007881 ORTHO05D009922 4.5e-09 64.3 40 72.5
Lj3g0003474 Lotus japonicus HOM05D007881 ORTHO05D009922 5.8e-09 63.9 67 50.7
Psat5g211080 Pisum sativum HOM05D007881 ORTHO05D009922 2.2e-08 62.0 69 49.3
HPP92_003553 Vanilla planifolia HOM05D007881 ORTHO05D009922 2.2e-08 62.0 68 50.0
ECA232G2986 Erigeron canadensis HOM05D005940 ORTHO05D007027 3.8e-08 61.2 45 60.0
Psat5g210160 Pisum sativum HOM05D007881 ORTHO05D009922 3.8e-08 61.2 69 49.3
EL10Ac4g09960 Beta vulgaris HOM05D007881 ORTHO05D009922 6.5e-08 60.5 65 52.3
Lsat_1_v5_gn_1_127981 Lactuca sativa HOM05D007881 ORTHO05D009922 1.1e-07 59.7 63 46.0
HanXRQChr16g0510911 Helianthus annuus HOM05D007881 ORTHO05D009922 1.9e-07 58.9 71 42.3
Sed0019316 Sechium edule HOM05D007881 ORTHO05D009922 1.9e-07 58.9 36 72.2
DCAR_007684 Daucus carota HOM05D007881 ORTHO05D009922 2.5e-07 58.5 74 45.9
CDE02G1687 Ceratophyllum demersum HOM05D007881 ORTHO05D009922 5.5e-07 57.4 66 48.5
BraA09t42051Z Brassica rapa HOM05D007881 ORTHO05D009922 9.3e-07 56.6 75 49.3
MBI17_g00966_MAGBIO Magnolia biondii HOM05D007881 ORTHO05D009922 9.3e-07 56.6 45 57.8
PGSC0003DMG400007262 Solanum tuberosum HOM05D007881 ORTHO05D009922 9.3e-07 56.6 99 40.4
arahy.Tifrunner.gnm1.ann1.4W1HTH Arachis hypogaea HOM05D007881 ORTHO05D009922 1.6e-06 55.8 45 64.4
Zm00001eb067480 Zea mays HOM05D007881 ORTHO05D009922 6.0e-06 53.9 45 51.1


User provided reference genes

Program Settings