Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G003300 Manihot esculenta HOM05D005420 ORTHO05D006524 1.4e-151 539.7 276 100.0
Potri.013G084300 Populus trichocarpa HOM05D005420 ORTHO05D006524 1.8e-116 422.9 278 81.3
Sabra13G0078900 Salix brachista HOM05D005420 ORTHO05D006524 4.5e-115 418.3 281 79.7
Ciclev10012405m.g Citrus clementina HOM05D005420 ORTHO05D006524 1.3e-109 400.2 285 75.4
QL10p064332 Quercus lobata HOM05D005420 ORTHO05D006524 4.9e-109 398.3 264 78.4
Atru.chr12.1712 Acer truncatum HOM05D005420 ORTHO05D006524 3.9e-106 388.7 230 84.8
Prupe.7G269700 Prunus persica HOM05D005420 ORTHO05D006524 1.9e-105 386.3 285 73.7
Thecc.05G186000 Theobroma cacao HOM05D005420 ORTHO05D006524 3.3e-105 385.6 275 76.0
Gohir.A02G106300 Gossypium hirsutum HOM05D005420 ORTHO05D006524 1.6e-104 383.3 275 74.9
Duzib177G0155 Durio zibethinus HOM05D005420 ORTHO05D006524 4.7e-104 381.7 272 76.5
MD15G1143300 Malus domestica HOM05D005420 ORTHO05D006524 1.1e-103 380.6 289 73.4
CiPaw.02G124600 Carya illinoinensis HOM05D005420 ORTHO05D006524 3.1e-103 379.0 294 71.4
RcHm_v2.0_Chr2g0084451 Rosa chinensis HOM05D005420 ORTHO05D006524 5.2e-103 378.3 278 73.0
Gohir.D03G071700 Gossypium hirsutum HOM05D005420 ORTHO05D006524 8.9e-103 377.5 275 74.5
MD00G1087500 Malus domestica HOM05D005420 ORTHO05D006524 8.9e-103 377.5 275 73.5
Gorai.003G088300 Gossypium raimondii HOM05D005420 ORTHO05D006524 4.4e-102 375.2 275 74.2
FvH4_1g00160 Fragaria vesca HOM05D005420 ORTHO05D006524 9.8e-102 374.0 277 72.9
FAN28G0609 Fragaria x ananassa HOM05D005420 ORTHO05D006524 9.8e-102 374.0 277 72.9
Dinv33245 Davidia involucrata HOM05D005420 ORTHO05D006524 1.7e-101 373.2 232 82.3
Cfa008513 Carpinus fangiana HOM05D005420 ORTHO05D006524 2.2e-101 372.9 214 87.4
Eucgr.H01455 Eucalyptus grandis HOM05D005420 ORTHO05D006524 2.2e-101 372.9 238 81.5
CiPaw.01G201600 Carya illinoinensis HOM05D005420 ORTHO05D006524 2.9e-101 372.5 214 87.4
CSS0017727 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 8.3e-101 370.9 225 84.4
CSS0022736 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 1.4e-100 370.2 224 84.4
FAN26G3138 Fragaria x ananassa HOM05D005420 ORTHO05D006524 1.4e-100 370.2 277 72.6
VMungo1215G3385 Vigna mungo HOM05D005420 ORTHO05D006524 1.9e-100 369.8 234 81.6
FAN23G1410 Fragaria x ananassa HOM05D005420 ORTHO05D006524 7.0e-100 367.9 277 72.9
MSTRG.24552 Avicennia marina HOM05D005420 ORTHO05D006524 1.2e-99 367.1 272 73.2
arahy.Tifrunner.gnm1.ann1.D6NWCJ Arachis hypogaea HOM05D005420 ORTHO05D006524 2.0e-99 366.3 226 82.7
arahy.Tifrunner.gnm1.ann1.EMGW5K Arachis hypogaea HOM05D005420 ORTHO05D006524 2.0e-99 366.3 226 82.7
TWI36G0345 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 4.6e-99 365.2 214 86.0
Cpa.g.sc151.6 Carica papaya HOM05D005420 ORTHO05D006524 7.8e-99 364.4 207 88.9
CANSAT56G1087 Cannabis sativa HOM05D005420 ORTHO05D006524 1.3e-98 363.6 290 71.0
Glyma.07G273700 Glycine max HOM05D005420 ORTHO05D006524 1.3e-98 363.6 228 82.0
TAR365G1242 Trochodendron aralioides HOM05D005420 ORTHO05D006524 1.3e-98 363.6 223 82.5
ClCG09G014850 Citrullus lanatus HOM05D005420 ORTHO05D006524 1.7e-98 363.2 278 70.9
EL10Ac3g06165 Beta vulgaris HOM05D005420 ORTHO05D006524 2.3e-98 362.8 276 71.4
Rhsim09G0003700 Rhododendron simsii HOM05D005420 ORTHO05D006524 3.9e-98 362.1 280 71.8
Ah.07g203200 Amaranthus hybridus HOM05D005420 ORTHO05D006524 5.0e-98 361.7 282 71.3
MBI07_g10354_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 1.1e-97 360.5 282 67.7
TAR636G0539 Trochodendron aralioides HOM05D005420 ORTHO05D006524 1.5e-97 360.1 223 81.6
Glyma.17G000800 Glycine max HOM05D005420 ORTHO05D006524 2.5e-97 359.4 228 81.1
GSVIVG01038249001 Vitis vinifera HOM05D005420 ORTHO05D006524 2.5e-97 359.4 214 84.6
Cc03_g15990 Coffea canephora HOM05D005420 ORTHO05D006524 5.6e-97 358.2 280 71.1
CsaV3_7G022350 Cucumis sativus L. HOM05D005420 ORTHO05D006524 7.3e-97 357.8 231 80.5
TWI36G1305 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 1.6e-96 356.7 268 73.5
Os01g0338600 Oryza sativa ssp. japonica HOM05D005420 ORTHO05D006524 2.1e-96 356.3 218 82.1
PSO675G2924 Papaver somniferum HOM05D005420 ORTHO05D006524 2.8e-96 355.9 283 69.6
PGR119G0486 Punica granatum HOM05D005420 ORTHO05D006524 2.8e-96 355.9 195 92.8
SalBow3G4646 Salvia bowleyana HOM05D005420 ORTHO05D006524 2.8e-96 355.9 247 75.3
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 2.8e-96 355.9 229 82.1
Carub.0005s2660 Capsella rubella HOM05D005420 ORTHO05D006524 4.7e-96 355.1 282 69.5
AUR62023710 Chenopodium quinoa HOM05D005420 ORTHO05D006524 6.2e-96 354.8 214 85.0
Phvul.003G074600 Phaseolus vulgaris HOM05D005420 ORTHO05D006524 8.1e-96 354.4 276 70.3
ATR0743G098 Amborella trichopoda HOM05D005420 ORTHO05D006524 1.1e-95 354.0 271 71.2
PSO732G0217 Papaver somniferum HOM05D005420 ORTHO05D006524 1.1e-95 354.0 282 69.1
Thhalv10001571m.g Eutrema salsugineum HOM05D005420 ORTHO05D006524 1.4e-95 353.6 266 72.2
Carub.0004s2651 Capsella rubella HOM05D005420 ORTHO05D006524 1.8e-95 353.2 215 82.8
Nitab4.5_0008205g0010 Nicotiana tabacum HOM05D005420 ORTHO05D006524 2.3e-95 352.8 210 85.7
AT2G43945 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 3.1e-95 352.4 227 79.7
AUR62002482 Chenopodium quinoa HOM05D005420 ORTHO05D006524 3.1e-95 352.4 214 84.6
Lj4g0016379 Lotus japonicus HOM05D005420 ORTHO05D006524 3.1e-95 352.4 226 80.1
THA.LOC104802345 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 4.0e-95 352.1 215 83.7
CDE09G0694 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 5.2e-95 351.7 223 79.4
Peaxi162Scf01205g00032 Petunia axillaris HOM05D005420 ORTHO05D006524 6.8e-95 351.3 216 82.9
AL4G42820 Arabidopsis lyrata HOM05D005420 ORTHO05D006524 1.2e-94 350.5 290 68.6
Nitab4.5_0000013g0040 Nicotiana tabacum HOM05D005420 ORTHO05D006524 1.5e-94 350.1 210 84.8
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 3.4e-94 349.0 282 69.5
Duzib128G1088 Durio zibethinus HOM05D005420 ORTHO05D006524 3.4e-94 349.0 195 91.8
CARHR139120 Cardamine hirsuta HOM05D005420 ORTHO05D006524 4.4e-94 348.6 231 77.9
Solyc08g015620.3 Solanum lycopersicum HOM05D005420 ORTHO05D006524 4.4e-94 348.6 204 86.3
Sopen08g005610 Solanum pennellii HOM05D005420 ORTHO05D006524 4.4e-94 348.6 204 86.3
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 5.8e-94 348.2 267 71.2
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 5.8e-94 348.2 267 71.2
BraA05t19397Z Brassica rapa HOM05D005420 ORTHO05D006524 7.5e-94 347.8 251 72.5
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 9.9e-94 347.4 231 78.4
DCAR_005460 Daucus carota HOM05D005420 ORTHO05D006524 1.3e-93 347.1 267 73.8
Lj6C285T2 Lonicera japonica HOM05D005420 ORTHO05D006524 2.2e-93 346.3 197 89.8
THA.LOC104804283 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 2.2e-93 346.3 236 77.1
Actinidia34566 Actinidia chinensis HOM05D005420 ORTHO05D006524 2.9e-93 345.9 264 70.8
Sed0010932 Sechium edule HOM05D005420 ORTHO05D006524 3.7e-93 345.5 274 67.9
HanXRQChr11g0343501 Helianthus annuus HOM05D005420 ORTHO05D006524 4.9e-93 345.1 274 71.2
A05p04100 Brassica napus HOM05D005420 ORTHO05D006524 8.3e-93 344.4 252 72.2
Lsat_1_v5_gn_1_76981 Lactuca sativa HOM05D005420 ORTHO05D006524 8.3e-93 344.4 210 83.3
HPP92_024700 Vanilla planifolia HOM05D005420 ORTHO05D006524 1.1e-92 344.0 229 76.9
ECA248G1232 Erigeron canadensis HOM05D005420 ORTHO05D006524 1.4e-92 343.6 218 81.7
BcaC02g12350 Brassica carinata HOM05D005420 ORTHO05D006524 1.9e-92 343.2 230 77.8
C04p04880 Brassica napus HOM05D005420 ORTHO05D006524 2.4e-92 342.8 230 77.8
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 2.4e-92 342.8 280 68.2
AT3G59870 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 4.1e-92 342.0 216 80.1
GSVIVG01026140001 Vitis vinifera HOM05D005420 ORTHO05D006524 4.1e-92 342.0 214 80.4
BolC4t22118H Brassica oleracea HOM05D005420 ORTHO05D006524 5.4e-92 341.7 208 84.1
Aa31LG1G25640 Aethionema arabicum HOM05D005420 ORTHO05D006524 7.1e-92 341.3 215 80.5
Aa31LG10G14100 Aethionema arabicum HOM05D005420 ORTHO05D006524 9.2e-92 340.9 287 65.9
Aqoxy1G01859 Aquilegia oxysepala HOM05D005420 ORTHO05D006524 2.1e-91 339.7 202 85.6
SGA_v2.0_scaffold12G06218 Striga asiatica HOM05D005420 ORTHO05D006524 2.1e-91 339.7 201 87.1
Migut.G00921 Erythranthe guttata HOM05D005420 ORTHO05D006524 3.5e-91 339.0 276 68.1
Actinidia18399 Actinidia chinensis HOM05D005420 ORTHO05D006524 1.7e-90 336.7 283 67.1
BcaB02g08884 Brassica carinata HOM05D005420 ORTHO05D006524 2.3e-90 336.3 206 83.5
unitig_27.g25143 Utricularia gibba HOM05D005420 ORTHO05D006524 2.3e-90 336.3 193 88.6
HanXRQChr01g0023651 Helianthus annuus HOM05D005420 ORTHO05D006524 3.9e-90 335.5 280 67.9
Psat4g001320 Pisum sativum HOM05D005420 ORTHO05D006524 8.6e-90 334.3 273 68.1
unitig_699.g19464 Utricularia gibba HOM05D005420 ORTHO05D006524 8.6e-90 334.3 193 87.0
Sp4g26040 Schrenkiella parvula HOM05D005420 ORTHO05D006524 4.3e-89 332.0 274 67.2
Zm00001eb159810 Zea mays HOM05D005420 ORTHO05D006524 9.5e-89 330.9 214 80.4
SMO367G0538 Selaginella moellendorffii HOM05D005420 ORTHO05D006524 6.4e-85 318.2 187 84.0
Pp3c8_21410 Physcomitrium patens HOM05D005420 ORTHO05D006524 3.2e-84 315.8 187 82.4
Mapoly0136s0029 Marchantia polymorpha HOM05D005420 ORTHO05D006524 1.0e-82 310.8 187 82.9
Pp3c24_16460 Physcomitrium patens HOM05D005420 ORTHO05D006524 3.0e-82 309.3 187 81.3
SEGI_26827 Sequoiadendron giganteum HOM05D005420 ORTHO05D006524 1.1e-81 307.4 208 76.0
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 1.9e-81 306.6 344 52.9
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 1.2e-78 297.4 222 72.5
Dinv24753 Davidia involucrata HOM05D005420 ORTHO05D006524 1.4e-76 290.4 178 82.6
Manes.13G003200 Manihot esculenta HOM05D005420 ORTHO05D006524 1.4e-76 290.4 157 94.3
Migut.N03031 Erythranthe guttata HOM05D005420 ORTHO05D006524 9.3e-76 287.7 227 70.5
Nn7g37463 Nelumbo nucifera HOM05D005420 ORTHO05D006524 1.9e-73 280.0 179 78.8
Sc25g0003040 Simmondsia chinensis HOM05D005420 ORTHO05D006524 2.4e-71 273.1 170 82.9
Hund22588 Selenicereus undatus HOM05D005420 ORTHO05D006524 3.4e-70 269.2 225 66.7
Nn3g18334 Nelumbo nucifera HOM05D005420 ORTHO05D006524 2.7e-67 259.6 220 66.4
MCO05G102 Micromonas commoda HOM05D005420 ORTHO05D006524 5.6e-65 251.9 160 76.9
Zm00001eb356860 Zea mays HOM05D005420 ORTHO05D006524 7.4e-65 251.5 241 59.8
Lalb_Chr18g0044961 Lupinus albus HOM05D005420 ORTHO05D006524 3.7e-64 249.2 134 93.3
Medtr4g134910 Medicago truncatula HOM05D005420 ORTHO05D006524 1.8e-63 246.9 151 83.4
Cre16.g676450 Chlamydomonas reinhardtii HOM05D005420 ORTHO05D006524 4.5e-62 242.3 192 65.1
Atru.chr12.1711 Acer truncatum HOM05D005420 ORTHO05D006524 2.4e-60 236.5 191 69.1
PRCOL_00006877 Prasinoderma coloniale HOM05D005420 ORTHO05D006524 1.2e-59 234.2 160 71.9
Oeu022910.1 Olea europaea HOM05D005420 ORTHO05D006524 1.8e-58 230.3 131 90.1
Ca_13540_v3 Cicer arietinum L. HOM05D005420 ORTHO05D006524 1.1e-55 221.1 202 63.9
AagrBONN_evm.TU.Sc2ySwM_228.1821 Anthoceros agrestis HOM05D005420 ORTHO05D006524 2.6e-46 189.9 150 66.0
Sed0016168 Sechium edule HOM05D005420 ORTHO05D006524 2.6e-38 163.3 90 92.2
CDE02G3676 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 1.7e-37 160.6 184 52.7
MBI07_g42072_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 3.8e-37 159.5 89 88.8
Eucgr.L00810 Eucalyptus grandis HOM05D005420 ORTHO05D006524 6.5e-37 158.7 123 67.5
Pp3c20_1670 Physcomitrium patens HOM05D005420 ORTHO05D006524 2.6e-33 146.7 160 50.0
Eucgr.H01440 Eucalyptus grandis HOM05D005420 ORTHO05D006524 2.8e-32 143.3 123 63.4
Lsat_1_v5_gn_1_75001 Lactuca sativa HOM05D005420 ORTHO05D006524 2.8e-24 116.7 78 73.1
Lsat_1_v5_gn_5_160100 Lactuca sativa HOM05D005420 ORTHO05D006524 3.5e-22 109.8 78 67.9
MSTRG.9265 Avicennia marina HOM05D005420 ORTHO05D006524 5.9e-22 109.0 80 72.5
CBR_g10867 Chara braunii HOM05D005420 ORTHO05D006524 5.2e-18 95.9 72 63.9
Lalb_Chr18g0044971 Lupinus albus HOM05D005420 ORTHO05D006524 1.5e-09 67.8 117 41.0
Sed0003231 Sechium edule HOM05D005420 ORTHO05D006524 2.0e-09 67.4 118 38.1


User provided reference genes

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