Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 2.8e-97 358.6 180 100.0
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 1.3e-94 349.7 180 96.7
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 4.2e-85 318.2 180 86.1
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 4.2e-85 318.2 180 86.1
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 2.7e-84 315.5 180 85.0
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 8.7e-83 310.5 179 85.5
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 1.5e-82 309.7 180 83.9
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 5.6e-82 307.8 180 85.6
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.7e-81 305.1 180 83.3
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 8.1e-81 303.9 180 82.8
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 1.4e-80 303.1 180 82.8
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 2.4e-80 302.4 180 82.8
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 3.1e-80 302.0 180 82.8
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 3.1e-80 302.0 184 82.6
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 5.3e-80 301.2 180 83.9
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 9.0e-80 300.4 181 82.9
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 1.2e-79 300.1 180 82.2
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 2.0e-79 299.3 172 84.9
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 3.4e-79 298.5 203 75.9
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.4e-79 298.5 180 82.8
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 3.4e-79 298.5 180 81.1
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 5.8e-79 297.7 184 79.9
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 5.8e-79 297.7 180 82.8
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 5.8e-79 297.7 180 82.8
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 7.6e-79 297.4 161 90.1
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 1.3e-78 296.6 180 80.0
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 1.3e-78 296.6 180 78.3
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 2.2e-78 295.8 180 78.3
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 2.2e-78 295.8 185 78.4
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 2.9e-78 295.4 180 80.0
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 3.8e-78 295.0 179 82.1
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 3.8e-78 295.0 161 89.4
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 3.8e-78 295.0 180 80.6
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 3.8e-78 295.0 180 80.6
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 6.5e-78 294.3 180 80.0
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 1.1e-77 293.5 180 79.4
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 1.1e-77 293.5 181 80.1
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 1.4e-77 293.1 180 81.1
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 1.4e-77 293.1 179 81.0
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 3.2e-77 292.0 183 79.2
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 4.2e-77 291.6 180 80.0
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 5.5e-77 291.2 159 88.1
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 7.1e-77 290.8 161 87.0
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 7.1e-77 290.8 161 86.3
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 9.3e-77 290.4 180 80.0
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 9.3e-77 290.4 178 78.7
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 1.6e-76 289.7 181 79.6
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 2.1e-76 289.3 180 77.8
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 2.1e-76 289.3 178 77.5
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 2.1e-76 289.3 180 80.0
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 2.7e-76 288.9 180 77.2
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 4.6e-76 288.1 181 78.5
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 4.6e-76 288.1 173 82.7
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 7.9e-76 287.3 173 82.1
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 1.8e-75 286.2 173 80.3
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 2.3e-75 285.8 181 80.1
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 2.3e-75 285.8 179 78.8
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 5.1e-75 284.6 175 81.1
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 6.7e-75 284.3 173 81.5
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 8.7e-75 283.9 185 76.2
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 8.7e-75 283.9 161 86.3
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 1.1e-74 283.5 179 77.1
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.9e-74 282.7 159 85.5
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 2.5e-74 282.3 175 80.6
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 2.5e-74 282.3 180 76.7
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 5.7e-74 281.2 159 84.9
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 5.7e-74 281.2 180 77.8
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 1.3e-73 280.0 180 76.7
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.6e-73 279.6 163 83.4
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 1.6e-73 279.6 180 76.1
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 2.1e-73 279.3 179 74.9
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 2.8e-73 278.9 159 84.9
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 6.3e-73 277.7 176 77.3
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 8.2e-73 277.3 190 74.2
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 8.2e-73 277.3 178 75.3
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 2.4e-72 275.8 172 79.1
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 3.1e-72 275.4 169 81.1
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 3.1e-72 275.4 160 83.8
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 3.1e-72 275.4 153 86.9
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 3.1e-72 275.4 180 75.0
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 5.3e-72 274.6 158 84.2
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 6.9e-72 274.2 159 84.3
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 9.0e-72 273.9 160 83.8
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 9.0e-72 273.9 159 83.6
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 1.2e-71 273.5 159 83.6
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 1.2e-71 273.5 178 74.2
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 1.5e-71 273.1 169 80.5
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 2.0e-71 272.7 158 82.9
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 2.0e-71 272.7 160 83.8
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 2.0e-71 272.7 159 84.3
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 4.5e-71 271.6 160 83.1
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 4.5e-71 271.6 175 73.7
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 4.5e-71 271.6 178 74.2
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 2.2e-70 269.2 170 76.5
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 3.8e-70 268.5 180 71.7
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 8.5e-70 267.3 145 89.7
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 1.1e-69 266.9 178 72.5
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 1.9e-69 266.2 171 79.5
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 2.5e-69 265.8 180 72.2
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 4.2e-69 265.0 145 88.3
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 2.1e-68 262.7 145 88.3
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 6.1e-68 261.2 178 70.8
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 2.3e-67 259.2 144 86.8
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 5.1e-67 258.1 142 87.3
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 1.1e-66 256.9 144 87.5
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 7.4e-66 254.2 137 90.5
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 1.6e-65 253.1 140 87.1
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 6.3e-65 251.1 148 83.1
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.4e-64 250.0 180 73.9
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 1.8e-64 249.6 175 69.7
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 2.0e-63 246.1 179 66.5
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 5.9e-63 244.6 176 70.5
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 7.7e-63 244.2 158 73.4
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 2.9e-62 242.3 176 69.3
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 2.5e-61 239.2 137 84.7
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 8.8e-59 230.7 154 71.4
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 5.9e-55 218.0 170 57.6
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 1.7e-54 216.5 135 80.7
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 5.0e-54 214.9 165 66.7
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.9e-53 213.0 155 71.0
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 2.6e-50 202.6 179 54.2
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 4.8e-49 198.4 143 72.0
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 8.2e-49 197.6 175 62.3
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 1.4e-48 196.8 109 86.2
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 1.8e-48 196.4 117 84.6
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 2.4e-48 196.1 117 80.3
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 1.8e-43 179.9 129 69.0
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 2.6e-42 176.0 113 77.0
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 6.3e-41 171.4 150 57.3
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 4.1e-40 168.7 111 78.4
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 6.5e-38 161.4 130 63.8
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 9.4e-37 157.5 100 76.0
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.3e-35 152.9 77 93.5
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.8e-33 146.0 120 64.2
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 8.3e-33 144.4 120 64.2
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 9.1e-32 141.0 189 47.1
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.0e-30 137.5 77 83.1
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 3.8e-30 135.6 89 76.4
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.8e-30 135.6 77 85.7
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.1e-29 134.0 68 91.2
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.8e-27 126.7 145 48.3
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 1.8e-27 126.7 86 74.4
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 2.0e-26 123.2 120 60.0
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 5.9e-23 111.7 64 84.4
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.2e-20 104.0 77 68.8
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 6.8e-19 98.2 52 90.4
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 2.2e-17 93.2 66 66.7
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 1.0e-14 84.3 58 69.0
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 2.3e-14 83.2 58 67.2
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 2.3e-06 56.6 33 75.8


User provided reference genes

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