Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 1.8e-63 245.7 125 100.0
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.1e-23 113.6 118 52.5
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 3.0e-21 105.5 97 57.7
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 6.6e-21 104.4 95 60.0
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 8.6e-21 104.0 96 55.2
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 1.9e-20 102.8 100 50.0
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 1.9e-20 102.8 144 45.1
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 5.6e-20 101.3 90 57.8
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 9.5e-20 100.5 90 57.8
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 2.1e-19 99.4 97 59.8
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 2.1e-19 99.4 91 57.1
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 3.6e-19 98.6 90 57.8
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.8e-18 96.3 96 53.1
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 1.8e-18 96.3 99 56.6
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 5.2e-18 94.7 107 43.9
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 5.2e-18 94.7 90 53.3
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 1.2e-17 93.6 90 53.3
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 4.4e-17 91.7 94 47.9
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 5.8e-17 91.3 90 51.1
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.8e-17 91.3 90 54.4
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.3e-16 90.1 95 53.7
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.3e-16 90.1 97 49.5
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.3e-16 90.1 90 54.4
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 1.7e-16 89.7 93 51.6
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.7e-16 89.7 95 48.4
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 2.9e-16 89.0 91 54.9
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.9e-16 89.0 97 49.5
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 2.9e-16 89.0 97 50.5
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 6.4e-16 87.8 97 49.5
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 6.4e-16 87.8 90 52.2
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 6.4e-16 87.8 95 50.5
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 8.3e-16 87.4 98 48.0
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 2.4e-15 85.9 82 58.5
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 2.4e-15 85.9 97 48.5
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.2e-15 85.5 97 48.5
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 7.0e-15 84.3 96 47.9
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 7.0e-15 84.3 97 49.5
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.2e-14 83.6 96 50.0
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.1e-14 82.8 98 51.0
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 2.1e-14 82.8 94 50.0
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 2.7e-14 82.4 92 50.0
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 3.5e-14 82.0 92 50.0
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 4.6e-14 81.6 116 45.7
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 4.6e-14 81.6 98 52.0
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 6.0e-14 81.3 98 46.9
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.0e-13 80.5 90 52.2
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 1.0e-13 80.5 95 46.3
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.3e-13 80.1 90 50.0
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 1.7e-13 79.7 87 49.4
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 3.0e-13 79.0 58 62.1
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.9e-13 78.6 97 47.4
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 5.1e-13 78.2 86 48.8
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 8.6e-13 77.4 98 43.9
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 8.6e-13 77.4 92 48.9
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.1e-12 77.0 92 43.5
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.1e-12 77.0 65 61.5
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.1e-12 77.0 94 43.6
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.1e-12 77.0 94 43.6
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 1.5e-12 76.6 94 43.6
Lalb_Chr14g0374201 Lupinus albus HOM05D003745 ORTHO05D004215 1.9e-12 76.3 120 41.7
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.9e-12 76.3 65 61.5
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 3.3e-12 75.5 96 44.8
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 3.3e-12 75.5 102 45.1
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 4.3e-12 75.1 94 47.9
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 5.6e-12 74.7 87 47.1
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 9.5e-12 73.9 94 44.7
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 1.2e-11 73.6 95 45.3
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 1.2e-11 73.6 97 44.3
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 1.6e-11 73.2 96 45.8
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 2.1e-11 72.8 95 45.3
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 2.1e-11 72.8 102 45.1
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 2.8e-11 72.4 90 43.3
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 2.8e-11 72.4 90 45.6
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 2.8e-11 72.4 100 45.0
Oeu050182.1 Olea europaea HOM05D003745 ORTHO05D004215 6.2e-11 71.2 97 45.4
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 8.1e-11 70.9 88 46.6
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 1.1e-10 70.5 63 58.7
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 1.1e-10 70.5 82 46.3
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 1.1e-10 70.5 87 46.0
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 1.4e-10 70.1 86 45.3
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 1.4e-10 70.1 102 44.1
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 1.8e-10 69.7 98 42.9
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 2.3e-10 69.3 94 42.6
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 4.0e-10 68.6 94 44.7
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 4.0e-10 68.6 88 45.5
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 4.0e-10 68.6 91 46.2
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 5.2e-10 68.2 99 43.4
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 5.2e-10 68.2 84 46.4
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.2e-10 68.2 84 46.4
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 5.2e-10 68.2 122 44.3
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 5.2e-10 68.2 90 41.1
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 6.8e-10 67.8 89 44.9
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 6.8e-10 67.8 103 41.7
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 6.8e-10 67.8 94 44.7
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 6.8e-10 67.8 88 47.7
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 6.8e-10 67.8 95 44.2
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 8.9e-10 67.4 89 43.8
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 8.9e-10 67.4 89 40.4
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 8.9e-10 67.4 96 44.8
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 1.2e-09 67.0 91 45.1
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 1.2e-09 67.0 91 45.1
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 1.2e-09 67.0 90 45.6
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.2e-09 67.0 84 46.4
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.2e-09 67.0 84 46.4
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.2e-09 67.0 94 44.7
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 2.0e-09 66.2 36 75.0
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 3.4e-09 65.5 83 48.2
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 3.4e-09 65.5 94 42.6
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 4.4e-09 65.1 105 41.9
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 4.4e-09 65.1 93 41.9
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 4.4e-09 65.1 53 60.4
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 4.4e-09 65.1 90 40.0
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 5.8e-09 64.7 93 43.0
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 5.8e-09 64.7 98 46.9
PGR102G0577 Punica granatum HOM05D003745 ORTHO05D004215 5.8e-09 64.7 97 44.3
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 7.5e-09 64.3 83 42.2
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 9.9e-09 63.9 100 43.0
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.3e-08 63.5 90 43.3
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.7e-08 63.2 94 42.6
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 1.7e-08 63.2 92 41.3
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 2.2e-08 62.8 58 60.3
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 2.2e-08 62.8 34 73.5
Lalb_Chr22g0350641 Lupinus albus HOM05D003745 ORTHO05D004215 2.2e-08 62.8 96 39.6
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 2.2e-08 62.8 122 36.1
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 2.9e-08 62.4 83 43.4
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 2.9e-08 62.4 83 43.4
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 2.9e-08 62.4 96 38.5
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.7e-08 62.0 78 41.0
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 3.7e-08 62.0 92 40.2
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 3.7e-08 62.0 97 44.3
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 6.4e-08 61.2 84 48.8
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 6.4e-08 61.2 80 45.0
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 6.4e-08 61.2 79 46.8
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 8.3e-08 60.8 92 38.0
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 8.3e-08 60.8 100 41.0
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 1.1e-07 60.5 87 43.7
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 1.4e-07 60.1 94 44.7
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 1.4e-07 60.1 95 43.2
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 1.9e-07 59.7 86 41.9
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 1.9e-07 59.7 86 41.9
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.9e-07 59.7 37 70.3
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 1.9e-07 59.7 74 44.6
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 2.4e-07 59.3 86 44.2
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 3.2e-07 58.9 39 71.8
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 4.1e-07 58.5 93 40.9
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 4.1e-07 58.5 93 40.9
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 4.1e-07 58.5 91 41.8
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.1e-07 58.5 84 41.7
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 4.1e-07 58.5 90 41.1
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 4.1e-07 58.5 36 75.0
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 4.1e-07 58.5 97 43.3
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 4.1e-07 58.5 85 43.5
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 4.1e-07 58.5 89 42.7
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 4.1e-07 58.5 97 40.2
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 5.4e-07 58.2 93 40.9
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 5.4e-07 58.2 93 40.9
Migut.N02515 Erythranthe guttata HOM05D003745 ORTHO05D004215 5.4e-07 58.2 95 42.1
Nitab4.5_0010833g0010 Nicotiana tabacum HOM05D003745 ORTHO05D004215 5.4e-07 58.2 88 44.3
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 5.4e-07 58.2 88 40.9
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 7.1e-07 57.8 53 58.5
vmacro23105 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 7.1e-07 57.8 64 54.7
CARHR209590 Cardamine hirsuta HOM05D003745 ORTHO05D004215 9.2e-07 57.4 68 51.5
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 9.2e-07 57.4 89 42.7
PGSC0003DMG400026535 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.2e-06 57.0 96 40.6
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.2e-06 57.0 89 41.6
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 1.6e-06 56.6 47 59.6
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 1.6e-06 56.6 32 71.9
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 2.1e-06 56.2 102 42.2
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 2.7e-06 55.8 96 40.6
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 3.5e-06 55.5 83 42.2
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.5e-06 55.5 94 37.2
A01p26850 Brassica napus HOM05D003745 ORTHO05D004215 6.0e-06 54.7 35 65.7
CAN.G644.31 Capsicum annuum HOM05D003745 ORTHO05D004215 7.8e-06 54.3 96 41.7
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 7.8e-06 54.3 82 42.7
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 7.8e-06 54.3 79 41.8


User provided reference genes

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