Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G155900 Manihot esculenta HOM05D006227 ORTHO05D007714 3.7e-57 224.6 105 100.0
CsaV3_1G014480 Cucumis sativus L. HOM05D006227 ORTHO05D007714 2.2e-46 188.7 102 82.4
Hma1.2p1_0051F.1_g029840 Hydrangea macrophylla HOM05D006227 ORTHO05D007714 1.1e-45 186.4 106 81.1
Prupe.6G117700 Prunus persica HOM05D006227 ORTHO05D007714 1.9e-45 185.7 102 82.4
Ciclev10029628m.g Citrus clementina HOM05D006227 ORTHO05D007714 3.2e-45 184.9 103 81.6
Sed0008116 Sechium edule HOM05D006227 ORTHO05D007714 3.2e-45 184.9 96 85.4
MELO3C004803.2 Cucumis melo HOM05D006227 ORTHO05D007714 5.5e-45 184.1 102 78.4
Eucgr.J00418 Eucalyptus grandis HOM05D006227 ORTHO05D007714 4.6e-44 181.0 107 79.4
RcHm_v2.0_Chr5g0055601 Rosa chinensis HOM05D006227 ORTHO05D007714 4.6e-44 181.0 106 81.1
CSS0048767 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 7.9e-44 180.3 105 77.1
Thecc.09G292900 Theobroma cacao HOM05D006227 ORTHO05D007714 1.8e-43 179.1 105 76.2
Actinidia07213 Actinidia chinensis HOM05D006227 ORTHO05D007714 2.3e-43 178.7 106 76.4
Dinv12530 Davidia involucrata HOM05D006227 ORTHO05D007714 3.0e-43 178.3 106 79.2
ClCG01G012780 Citrullus lanatus HOM05D006227 ORTHO05D007714 5.1e-43 177.6 102 76.5
Dinv29415 Davidia involucrata HOM05D006227 ORTHO05D007714 5.1e-43 177.6 105 79.0
CiPaw.13G141700 Carya illinoinensis HOM05D006227 ORTHO05D007714 8.8e-43 176.8 107 78.5
vmacro14378 Vaccinium macrocarpon HOM05D006227 ORTHO05D007714 8.8e-43 176.8 106 76.4
TAR623G1401 Trochodendron aralioides HOM05D006227 ORTHO05D007714 3.3e-42 174.9 105 75.2
GSVIVG01023006001 Vitis vinifera HOM05D006227 ORTHO05D007714 3.3e-42 174.9 108 75.0
MD14G1038500 Malus domestica HOM05D006227 ORTHO05D007714 9.7e-42 173.3 102 76.5
CANSAT54G1955 Cannabis sativa HOM05D006227 ORTHO05D007714 2.8e-41 171.8 94 79.8
Duzib170G0407 Durio zibethinus HOM05D006227 ORTHO05D007714 8.2e-41 170.2 105 72.4
Oeu050173.1 Olea europaea HOM05D006227 ORTHO05D007714 1.4e-40 169.5 102 74.5
Atru.chr3.3392 Acer truncatum HOM05D006227 ORTHO05D007714 4.1e-40 167.9 105 71.4
Potri.004G189300 Populus trichocarpa HOM05D006227 ORTHO05D007714 4.1e-40 167.9 94 76.6
Duzib168G0197 Durio zibethinus HOM05D006227 ORTHO05D007714 6.9e-40 167.2 106 70.8
Gohir.D09G092300 Gossypium hirsutum HOM05D006227 ORTHO05D007714 9.1e-40 166.8 104 72.1
Gorai.006G108900 Gossypium raimondii HOM05D006227 ORTHO05D007714 9.1e-40 166.8 104 72.1
Nitab4.5_0002781g0010 Nicotiana tabacum HOM05D006227 ORTHO05D007714 9.1e-40 166.8 102 74.5
Rhsim01G0209000 Rhododendron simsii HOM05D006227 ORTHO05D007714 1.2e-39 166.4 126 63.5
Gohir.A09G092200 Gossypium hirsutum HOM05D006227 ORTHO05D007714 3.4e-39 164.9 104 72.1
CAN.G170.132 Capsicum annuum HOM05D006227 ORTHO05D007714 4.5e-39 164.5 102 74.5
ATR0712G069 Amborella trichopoda HOM05D006227 ORTHO05D007714 1.3e-38 162.9 102 70.6
ECA238G2178 Erigeron canadensis HOM05D006227 ORTHO05D007714 1.3e-38 162.9 92 75.0
Gorai.006G108700 Gossypium raimondii HOM05D006227 ORTHO05D007714 1.7e-38 162.5 104 71.2
Sc12g0004090 Simmondsia chinensis HOM05D006227 ORTHO05D007714 1.7e-38 162.5 101 70.3
MSTRG.18723 Avicennia marina HOM05D006227 ORTHO05D007714 2.2e-38 162.2 106 70.8
Solyc01g086860.3 Solanum lycopersicum HOM05D006227 ORTHO05D007714 2.2e-38 162.2 102 72.5
VMungo0251G3527 Vigna mungo HOM05D006227 ORTHO05D007714 2.2e-38 162.2 105 71.4
MSTRG.21069 Avicennia marina HOM05D006227 ORTHO05D007714 2.9e-38 161.8 102 69.6
Ca_18451_v3 Cicer arietinum L. HOM05D006227 ORTHO05D007714 2.9e-38 161.8 107 68.2
TWI56G0405 Tripterygium wilfordii HOM05D006227 ORTHO05D007714 2.9e-38 161.8 105 69.5
Gohir.A03G000008 Gossypium hirsutum HOM05D006227 ORTHO05D007714 6.5e-38 160.6 104 70.2
Migut.D02328 Erythranthe guttata HOM05D006227 ORTHO05D007714 8.5e-38 160.2 106 69.8
Cc01_g09910 Coffea canephora HOM05D006227 ORTHO05D007714 1.1e-37 159.8 95 73.7
Phvul.002G218500 Phaseolus vulgaris HOM05D006227 ORTHO05D007714 1.1e-37 159.8 105 70.5
Sopen01g033870 Solanum pennellii HOM05D006227 ORTHO05D007714 1.1e-37 159.8 102 71.6
TPR.G13925 Trifolium pratense HOM05D006227 ORTHO05D007714 1.1e-37 159.8 102 67.6
Sc06g0007110 Simmondsia chinensis HOM05D006227 ORTHO05D007714 1.4e-37 159.5 99 69.7
Glyma.07G187100 Glycine max HOM05D006227 ORTHO05D007714 1.9e-37 159.1 108 67.6
Gohir.A04G148400 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.9e-37 159.1 104 69.2
SGA_v2.0_scaffold45G17093 Striga asiatica HOM05D006227 ORTHO05D007714 1.9e-37 159.1 106 67.9
EL10Ac9g21059 Beta vulgaris HOM05D006227 ORTHO05D007714 2.5e-37 158.7 95 72.6
DCAR_015484 Daucus carota HOM05D006227 ORTHO05D007714 4.2e-37 157.9 95 72.6
Psat7g105560 Pisum sativum HOM05D006227 ORTHO05D007714 5.5e-37 157.5 107 68.2
CDE02G3751 Ceratophyllum demersum HOM05D006227 ORTHO05D007714 7.2e-37 157.1 102 68.6
Solyc01g112370.3 Solanum lycopersicum HOM05D006227 ORTHO05D007714 9.4e-37 156.8 102 71.6
Psat7g105760 Pisum sativum HOM05D006227 ORTHO05D007714 1.6e-36 156.0 107 68.2
arahy.Tifrunner.gnm1.ann1.U4LPMY Arachis hypogaea HOM05D006227 ORTHO05D007714 1.4e-35 152.9 90 71.1
Lalb_Chr09g0327121 Lupinus albus HOM05D006227 ORTHO05D007714 1.4e-35 152.9 104 67.3
Gohir.D09G092100 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.8e-35 152.5 108 66.7
FvH4_3g30110 Fragaria vesca HOM05D006227 ORTHO05D007714 3.0e-35 151.8 100 70.0
Gohir.A08G253700 Gossypium hirsutum HOM05D006227 ORTHO05D007714 3.0e-35 151.8 104 67.3
CSS0049374 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 1.1e-34 149.8 112 63.4
HPP92_003486 Vanilla planifolia HOM05D006227 ORTHO05D007714 1.7e-33 146.0 95 65.3
arahy.Tifrunner.gnm1.ann1.ME5340 Arachis hypogaea HOM05D006227 ORTHO05D007714 2.2e-33 145.6 98 65.3
FAN16G3386 Fragaria x ananassa HOM05D006227 ORTHO05D007714 6.3e-33 144.1 109 64.2
Gohir.A10G243300 Gossypium hirsutum HOM05D006227 ORTHO05D007714 6.3e-33 144.1 95 69.5
QL01p013949 Quercus lobata HOM05D006227 ORTHO05D007714 8.2e-33 143.7 161 47.8
Medtr3g014200 Medicago truncatula HOM05D006227 ORTHO05D007714 1.8e-32 142.5 108 62.0
HPP92_026884 Vanilla planifolia HOM05D006227 ORTHO05D007714 3.1e-32 141.7 95 64.2
CARHR232720 Cardamine hirsuta HOM05D006227 ORTHO05D007714 5.3e-32 141.0 105 61.9
SalBow5G0633 Salvia bowleyana HOM05D006227 ORTHO05D007714 5.3e-32 141.0 100 63.0
SalBow5G1351 Salvia bowleyana HOM05D006227 ORTHO05D007714 5.3e-32 141.0 100 63.0
AT4G25315 Arabidopsis thaliana HOM05D006227 ORTHO05D007714 9.1e-32 140.2 105 63.8
THA.LOC104799532 Tarenaya hassleriana HOM05D006227 ORTHO05D007714 1.2e-31 139.8 103 63.1
Medtr4g092090 Medicago truncatula HOM05D006227 ORTHO05D007714 2.0e-31 139.0 108 60.2
A03p55890 Brassica napus HOM05D006227 ORTHO05D007714 4.5e-31 137.9 105 61.9
Lj4g0025300 Lotus japonicus HOM05D006227 ORTHO05D007714 5.9e-31 137.5 77 79.2
Carub.0008s1058 Capsella rubella HOM05D006227 ORTHO05D007714 7.7e-31 137.1 105 63.8
Sp7g23330 Schrenkiella parvula HOM05D006227 ORTHO05D007714 7.7e-31 137.1 105 61.9
Nitab4.5_0001542g0090 Nicotiana tabacum HOM05D006227 ORTHO05D007714 3.8e-30 134.8 75 78.7
Carub.0007s1570 Capsella rubella HOM05D006227 ORTHO05D007714 5.0e-30 134.4 105 61.9
DCAR_018745 Daucus carota HOM05D006227 ORTHO05D007714 5.0e-30 134.4 78 76.9
PSO339G0999 Papaver somniferum HOM05D006227 ORTHO05D007714 5.0e-30 134.4 99 61.6
Peaxi162Scf00428g01022 Petunia axillaris HOM05D006227 ORTHO05D007714 5.0e-30 134.4 79 74.7
Nitab4.5_0006850g0030 Nicotiana tabacum HOM05D006227 ORTHO05D007714 8.5e-30 133.7 75 78.7
HanXRQChr07g0197671 Helianthus annuus HOM05D006227 ORTHO05D007714 1.1e-29 133.3 74 79.7
Pp3c23_15340 Physcomitrium patens HOM05D006227 ORTHO05D007714 1.1e-29 133.3 99 59.6
BcaNung06163 Brassica carinata HOM05D006227 ORTHO05D007714 1.5e-29 132.9 105 61.0
C07p54180 Brassica napus HOM05D006227 ORTHO05D007714 2.5e-29 132.1 94 62.8
SEGI_33746 Sequoiadendron giganteum HOM05D006227 ORTHO05D007714 2.5e-29 132.1 108 57.4
AUR62036497 Chenopodium quinoa HOM05D006227 ORTHO05D007714 4.2e-29 131.3 78 74.4
AUR62037073 Chenopodium quinoa HOM05D006227 ORTHO05D007714 5.5e-29 131.0 78 74.4
BcaC06g32822 Brassica carinata HOM05D006227 ORTHO05D007714 7.2e-29 130.6 94 62.8
AL7G27820 Arabidopsis lyrata HOM05D006227 ORTHO05D007714 3.6e-28 128.3 124 52.4
Hund07714 Selenicereus undatus HOM05D006227 ORTHO05D007714 1.0e-27 126.7 132 48.5
AUR62023956 Chenopodium quinoa HOM05D006227 ORTHO05D007714 2.3e-27 125.6 78 71.8
Os09g0516800 Oryza sativa ssp. japonica HOM05D006227 ORTHO05D007714 4.0e-27 124.8 88 59.1
BraA03t14660Z Brassica rapa HOM05D006227 ORTHO05D007714 6.7e-27 124.0 127 50.4
A01p16610 Brassica napus HOM05D006227 ORTHO05D007714 8.8e-27 123.6 122 52.5
BraA01t01616Z Brassica rapa HOM05D006227 ORTHO05D007714 8.8e-27 123.6 122 52.5
C01p20840 Brassica napus HOM05D006227 ORTHO05D007714 1.1e-26 123.2 116 53.4
Mapoly0046s0116 Marchantia polymorpha HOM05D006227 ORTHO05D007714 2.0e-26 122.5 92 55.4
Duzib170G0945 Durio zibethinus HOM05D006227 ORTHO05D007714 3.3e-26 121.7 78 67.9
PGSC0003DMG400025251 Solanum tuberosum HOM05D006227 ORTHO05D007714 5.7e-26 120.9 75 70.7
Zm00001eb314390 Zea mays HOM05D006227 ORTHO05D007714 7.5e-26 120.6 87 58.6
BolC7t45904H Brassica oleracea HOM05D006227 ORTHO05D007714 9.7e-26 120.2 111 52.3
Aa31sc16G160 Aethionema arabicum HOM05D006227 ORTHO05D007714 1.3e-25 119.8 110 53.6
FAN11G2712 Fragaria x ananassa HOM05D006227 ORTHO05D007714 3.7e-25 118.2 70 74.3
Aqoxy2G01473 Aquilegia oxysepala HOM05D006227 ORTHO05D007714 4.8e-25 117.9 78 71.8
AagrBONN_evm.TU.Sc2ySwM_228.5102 Anthoceros agrestis HOM05D006227 ORTHO05D007714 8.2e-25 117.1 90 54.4
Oeu023727.1 Olea europaea HOM05D006227 ORTHO05D007714 9.1e-24 113.6 73 72.6
Nn6g35079 Nelumbo nucifera HOM05D006227 ORTHO05D007714 1.6e-23 112.8 64 78.1
unitig_899.g15369 Utricularia gibba HOM05D006227 ORTHO05D007714 7.7e-23 110.5 73 64.4
CSS0004675 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 1.0e-22 110.2 69 68.1
PGR119G0591 Punica granatum HOM05D006227 ORTHO05D007714 3.8e-22 108.2 69 68.1
MBI01_g43174_MAGBIO Magnolia biondii HOM05D006227 ORTHO05D007714 9.4e-21 103.6 74 67.6
Manes.04G010000 Manihot esculenta HOM05D006227 ORTHO05D007714 2.1e-20 102.4 50 88.0
Thhalv10026551m.g Eutrema salsugineum HOM05D006227 ORTHO05D007714 6.1e-20 100.9 77 62.3
Lalb_Chr16g0383271 Lupinus albus HOM05D006227 ORTHO05D007714 5.7e-18 94.4 79 58.2
BolC1t02011H Brassica oleracea HOM05D006227 ORTHO05D007714 4.8e-17 91.3 122 42.6
SMO144G0106 Selaginella moellendorffii HOM05D006227 ORTHO05D007714 3.1e-16 88.6 106 38.7
MD03G1133000 Malus domestica HOM05D006227 ORTHO05D007714 2.1e-12 75.9 40 80.0
Manes.04G009950 Manihot esculenta HOM05D006227 ORTHO05D007714 2.7e-12 75.5 40 85.0
Lsat_1_v5_gn_2_96480 Lactuca sativa HOM05D006227 ORTHO05D007714 8.8e-11 70.5 40 72.5
MCO03G239 Micromonas commoda HOM05D006227 ORTHO05D007714 3.4e-10 68.6 88 34.1
CDE11G0759 Ceratophyllum demersum HOM05D006227 ORTHO05D129109 4.9e-09 64.7 52 57.7


User provided reference genes

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