Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 1.7e-151 539.3 273 100.0
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 5.5e-105 384.8 273 72.5
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 2.3e-103 379.4 273 71.1
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 1.1e-102 377.1 272 73.2
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 1.7e-101 373.2 273 70.3
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 1.4e-100 370.2 270 70.4
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 4.1e-100 368.6 274 70.1
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 5.3e-100 368.2 273 68.9
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 7.0e-100 367.9 274 69.0
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 9.1e-100 367.5 273 70.7
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 9.1e-100 367.5 281 68.3
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 9.1e-100 367.5 240 76.7
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 5.9e-99 364.8 272 68.8
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 7.7e-99 364.4 275 70.5
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 1.3e-98 363.6 276 68.5
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 2.2e-98 362.8 274 70.1
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 3.8e-98 362.1 247 73.7
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 1.0e-95 354.0 272 67.6
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 1.0e-95 354.0 248 72.2
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 2.3e-95 352.8 273 65.9
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 2.3e-95 352.8 274 67.9
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 5.2e-95 351.7 270 67.4
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 2.6e-94 349.4 278 68.3
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 4.4e-94 348.6 262 68.3
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 1.3e-93 347.1 238 72.7
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 6.3e-93 344.7 265 68.3
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 1.1e-92 344.0 242 70.7
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 1.4e-92 343.6 276 66.3
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 1.8e-92 343.2 273 65.2
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 4.1e-92 342.0 272 65.1
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 5.3e-92 341.7 267 67.8
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 7.0e-92 341.3 237 73.0
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 9.1e-92 340.9 238 72.7
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 9.1e-92 340.9 274 64.2
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 2.0e-91 339.7 264 66.7
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 2.7e-91 339.3 245 67.8
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 3.5e-91 339.0 275 65.1
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 3.5e-91 339.0 250 68.4
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 1.3e-90 337.0 267 64.4
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 1.7e-90 336.7 273 63.7
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 2.2e-90 336.3 272 64.3
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 5.0e-90 335.1 278 63.3
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 1.5e-89 333.6 278 62.2
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 1.5e-89 333.6 274 63.9
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 3.2e-89 332.4 250 66.8
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 5.5e-89 331.6 259 67.2
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 5.5e-89 331.6 276 62.7
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 7.2e-89 331.3 238 68.5
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 2.1e-88 329.7 273 62.3
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.1e-88 328.2 273 61.9
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 8.0e-88 327.8 233 70.8
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 1.2e-86 323.9 230 69.6
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 2.6e-86 322.8 272 61.0
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 2.2e-85 319.7 276 63.4
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 3.7e-85 318.9 282 59.6
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 8.3e-85 317.8 231 68.0
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 1.1e-84 317.4 277 59.9
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 1.4e-84 317.0 271 59.4
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 1.8e-84 316.6 235 66.4
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 2.4e-84 316.2 274 58.4
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 2.0e-83 313.2 278 59.0
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 4.5e-83 312.0 235 66.8
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 4.5e-83 312.0 206 76.7
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 1.3e-82 310.5 277 58.8
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.3e-82 309.7 242 66.1
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 2.3e-82 309.7 278 59.0
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 5.0e-82 308.5 242 63.2
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 5.0e-82 308.5 242 63.2
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 6.6e-82 308.1 274 58.8
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 2.5e-81 306.2 274 58.8
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 2.5e-81 306.2 274 58.8
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.5e-81 306.2 242 64.9
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 3.3e-81 305.8 280 59.6
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 5.5e-81 305.1 274 59.5
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 7.2e-81 304.7 274 56.6
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 1.2e-80 303.9 276 56.2
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 1.6e-80 303.5 274 58.8
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 2.8e-80 302.8 280 58.9
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 3.0e-79 299.3 274 58.8
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 4.0e-79 298.9 271 58.3
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 9.8e-78 294.3 275 57.8
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 1.3e-77 293.9 198 74.7
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.8e-77 292.7 237 62.4
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 1.1e-76 290.8 225 66.7
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 1.2e-75 287.3 198 73.7
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 2.7e-75 286.2 220 63.6
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 2.9e-74 282.7 273 57.1
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 8.6e-74 281.2 191 73.8
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 1.6e-72 276.9 297 52.2
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 2.8e-72 276.2 223 63.7
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 6.8e-71 271.6 218 63.8
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 4.4e-70 268.9 194 66.0
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 1.7e-69 266.9 265 53.6
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 2.2e-69 266.5 245 58.4
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 2.0e-67 260.0 270 53.7
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 8.6e-66 254.6 229 56.8
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 1.1e-65 254.2 244 54.1
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.8e-63 246.9 185 65.4
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.5e-62 241.5 180 66.1
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 7.1e-60 235.0 220 56.8
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 1.5e-57 227.3 159 70.4
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.6e-51 207.2 234 51.7
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 1.6e-48 197.2 124 77.4
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.7e-48 195.7 219 51.6
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 3.1e-47 193.0 146 64.4
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 1.5e-46 190.7 122 76.2
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.9e-37 159.1 178 50.0
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 4.2e-36 156.0 154 56.5
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 7.1e-36 155.2 217 38.2
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 2.3e-34 150.2 124 61.3
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 9.6e-33 144.8 115 60.9
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.4e-31 141.0 255 40.4
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.4e-31 140.2 123 57.7
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 1.6e-24 117.5 87 64.4
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.8e-23 114.0 103 53.4
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.9e-23 112.1 70 74.3
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 9.0e-23 111.7 110 54.5
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 5.5e-20 102.4 74 68.9
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.0e-18 98.2 136 45.6
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 1.3e-18 97.8 81 54.3
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.0e-18 96.7 96 53.1
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 2.8e-16 90.1 98 49.0
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 3.7e-16 89.7 91 48.4
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 4.1e-15 86.3 109 46.8
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 9.0e-15 85.1 67 61.2
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 2.6e-14 83.6 66 60.6
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.0e-13 81.6 99 46.5
Gohir.A02G089101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.9e-12 77.4 88 48.9
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.2e-12 76.6 87 47.1
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 1.1e-09 68.2 167 28.1
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 3.3e-09 66.6 47 57.4
Zm00001eb410990 Zea mays HOM05D005360 ORTHO05D006501 3.3e-09 66.6 47 57.4
Gohir.A01G162600 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.3e-09 66.2 143 30.8
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 9.7e-09 65.1 51 66.7
Zm00001eb228200 Zea mays HOM05D005360 ORTHO05D006501 9.7e-09 65.1 64 48.4
Zm00001eb229280 Zea mays HOM05D005360 ORTHO05D006501 9.7e-09 65.1 64 48.4
SalBow1G4086 Salvia bowleyana HOM05D005360 ORTHO05D006501 3.4e-06 56.6 81 39.5
FvH4_1g23850 Fragaria vesca HOM05D005360 ORTHO05D006501 1.0e-05 55.1 41 65.9
Gohir.A01G109901 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.0e-05 55.1 115 39.1


User provided reference genes

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