Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G152500 Manihot esculenta HOM05D006252 ORTHO05D007909 7.5e-104 380.6 198 100.0
Sabra09G0002100 Salix brachista HOM05D006252 ORTHO05D007909 1.4e-89 333.2 198 86.9
CiPaw.13G122300 Carya illinoinensis HOM05D006252 ORTHO05D007909 3.1e-89 332.0 194 89.2
Potri.004G217000 Populus trichocarpa HOM05D006252 ORTHO05D007909 1.5e-88 329.7 199 86.9
Sabra04G0147700 Salix brachista HOM05D006252 ORTHO05D007909 6.4e-87 324.3 192 87.0
QL01p014977 Quercus lobata HOM05D006252 ORTHO05D007909 7.1e-86 320.9 193 88.1
Cpa.g.sc47.1 Carica papaya HOM05D006252 ORTHO05D007909 2.1e-85 319.3 198 85.9
Ciclev10029219m.g Citrus clementina HOM05D006252 ORTHO05D007909 1.9e-83 312.8 197 84.3
CSS0004051 Camellia sinensis var. sinensis HOM05D006252 ORTHO05D007909 5.6e-83 311.2 196 85.2
CSS0044427 Camellia sinensis var. sinensis HOM05D006252 ORTHO05D007909 5.6e-83 311.2 196 85.2
Atru.chr3.3505 Acer truncatum HOM05D006252 ORTHO05D007909 9.6e-83 310.5 197 83.8
Nn6g35212 Nelumbo nucifera HOM05D006252 ORTHO05D007909 3.6e-82 308.5 195 83.6
Thecc.09G298300 Theobroma cacao HOM05D006252 ORTHO05D007909 1.4e-81 306.6 198 81.8
TAR633G0073 Trochodendron aralioides HOM05D006252 ORTHO05D007909 1.8e-81 306.2 194 83.5
Gorai.009G090100 Gossypium raimondii HOM05D006252 ORTHO05D007909 3.1e-81 305.4 194 83.5
PGR102G1698 Punica granatum HOM05D006252 ORTHO05D007909 3.1e-81 305.4 199 82.9
Cfa010288 Carpinus fangiana HOM05D006252 ORTHO05D007909 4.0e-81 305.1 194 83.5
Gohir.D05G088000 Gossypium hirsutum HOM05D006252 ORTHO05D007909 9.0e-81 303.9 194 83.0
Hma1.2p1_0051F.1_g029510 Hydrangea macrophylla HOM05D006252 ORTHO05D007909 2.6e-80 302.4 196 81.6
Gohir.A05G086700 Gossypium hirsutum HOM05D006252 ORTHO05D007909 4.4e-80 301.6 194 82.0
Cc01_g10250 Coffea canephora HOM05D006252 ORTHO05D007909 9.9e-80 300.4 197 82.2
Cc08_g04460 Coffea canephora HOM05D006252 ORTHO05D007909 1.3e-79 300.1 197 81.7
MD03G1128600 Malus domestica HOM05D006252 ORTHO05D007909 2.9e-79 298.9 194 81.4
COL.COLO4_19198 Corchorus olitorius HOM05D006252 ORTHO05D007909 8.4e-79 297.4 198 79.3
MD11G1148800 Malus domestica HOM05D006252 ORTHO05D007909 1.1e-78 297.0 194 80.9
AL5G23350 Arabidopsis lyrata HOM05D006252 ORTHO05D007909 4.2e-78 295.0 199 77.9
RcHm_v2.0_Chr5g0056671 Rosa chinensis HOM05D006252 ORTHO05D007909 4.6e-77 291.6 194 80.4
TWI79G1340 Tripterygium wilfordii HOM05D006252 ORTHO05D007909 4.6e-77 291.6 198 79.3
Prupe.6G113200 Prunus persica HOM05D006252 ORTHO05D007909 6.0e-77 291.2 194 79.4
Glyma.12G081500 Glycine max HOM05D006252 ORTHO05D007909 1.0e-76 290.4 196 80.1
FAN16G0084 Fragaria x ananassa HOM05D006252 ORTHO05D007909 1.3e-76 290.0 194 79.9
CsaV3_1G013140 Cucumis sativus L. HOM05D006252 ORTHO05D007909 2.3e-76 289.3 201 79.6
FvH4_3g30600 Fragaria vesca HOM05D006252 ORTHO05D007909 2.3e-76 289.3 194 79.9
FAN11G0619 Fragaria x ananassa HOM05D006252 ORTHO05D007909 2.3e-76 289.3 194 79.9
FAN21G1285 Fragaria x ananassa HOM05D006252 ORTHO05D007909 2.3e-76 289.3 194 79.4
PSO063G5667 Papaver somniferum HOM05D006252 ORTHO05D007909 2.3e-76 289.3 195 79.5
AT3G44890 Arabidopsis thaliana HOM05D006252 ORTHO05D007909 3.0e-76 288.9 199 75.4
CARHR151120 Cardamine hirsuta HOM05D006252 ORTHO05D007909 5.1e-76 288.1 199 76.4
THA.LOC104810882 Tarenaya hassleriana HOM05D006252 ORTHO05D007909 5.1e-76 288.1 195 77.9
MELO3C004995.2 Cucumis melo HOM05D006252 ORTHO05D007909 6.6e-76 287.7 201 79.6
FAN25G2218 Fragaria x ananassa HOM05D006252 ORTHO05D007909 8.7e-76 287.3 194 78.9
PSO339G3106 Papaver somniferum HOM05D006252 ORTHO05D007909 1.1e-75 287.0 195 78.5
CDE08G0788 Ceratophyllum demersum HOM05D006252 ORTHO05D007909 1.5e-75 286.6 192 78.1
Glyma.11G192500 Glycine max HOM05D006252 ORTHO05D007909 1.9e-75 286.2 197 79.2
Thhalv10002672m.g Eutrema salsugineum HOM05D006252 ORTHO05D007909 2.5e-75 285.8 199 76.9
HanXRQChr02g0055341 Helianthus annuus HOM05D006252 ORTHO05D007909 3.3e-75 285.4 201 78.1
Aa31LG4G14200 Aethionema arabicum HOM05D006252 ORTHO05D007909 4.3e-75 285.0 199 74.9
ClCG03G002460 Citrullus lanatus HOM05D006252 ORTHO05D007909 4.3e-75 285.0 201 79.6
MSTRG.18705 Avicennia marina HOM05D006252 ORTHO05D007909 7.3e-75 284.3 195 76.4
AUR62014977 Chenopodium quinoa HOM05D006252 ORTHO05D007909 1.3e-74 283.5 199 76.4
Sp5g16320 Schrenkiella parvula HOM05D006252 ORTHO05D007909 1.6e-74 283.1 199 76.4
Carub.0005s1063 Capsella rubella HOM05D006252 ORTHO05D007909 2.1e-74 282.7 199 73.9
CDE02G0854 Ceratophyllum demersum HOM05D006252 ORTHO05D007909 2.8e-74 282.3 192 76.6
Actinidia07187 Actinidia chinensis HOM05D006252 ORTHO05D007909 3.6e-74 282.0 195 79.5
Phvul.011G086500 Phaseolus vulgaris HOM05D006252 ORTHO05D007909 4.8e-74 281.6 198 76.3
VMungo1127G0830 Vigna mungo HOM05D006252 ORTHO05D007909 6.2e-74 281.2 198 76.8
GSVIVG01031460001 Vitis vinifera HOM05D006252 ORTHO05D007909 8.1e-74 280.8 163 90.2
AUR62029150 Chenopodium quinoa HOM05D006252 ORTHO05D007909 1.1e-73 280.4 199 75.4
Migut.D02295 Erythranthe guttata HOM05D006252 ORTHO05D007909 1.4e-73 280.0 196 77.0
SalBow6G6884 Salvia bowleyana HOM05D006252 ORTHO05D007909 1.8e-73 279.6 215 72.1
TWI75G0936 Tripterygium wilfordii HOM05D006252 ORTHO05D007909 2.4e-73 279.3 198 77.8
Lsat_1_v5_gn_6_43381 Lactuca sativa HOM05D006252 ORTHO05D007909 3.1e-73 278.9 190 78.9
Sed0008981 Sechium edule HOM05D006252 ORTHO05D007909 3.1e-73 278.9 197 77.2
EL10Ac9g22626 Beta vulgaris HOM05D006252 ORTHO05D007909 4.0e-73 278.5 199 74.9
BcaB05g23061 Brassica carinata HOM05D006252 ORTHO05D007909 9.0e-73 277.3 195 75.4
BcaC09g49661 Brassica carinata HOM05D006252 ORTHO05D007909 9.0e-73 277.3 195 75.4
C01p34110 Brassica napus HOM05D006252 ORTHO05D007909 9.0e-73 277.3 195 75.4
BolC1t03381H Brassica oleracea HOM05D006252 ORTHO05D007909 9.0e-73 277.3 195 75.4
vmacro14388 Vaccinium macrocarpon HOM05D006252 ORTHO05D007909 9.0e-73 277.3 194 74.2
Aqoxy1G01090 Aquilegia oxysepala HOM05D006252 ORTHO05D007909 1.5e-72 276.6 194 74.2
A01p26720 Brassica napus HOM05D006252 ORTHO05D007909 4.5e-72 275.0 195 74.9
BraA01t02602Z Brassica rapa HOM05D006252 ORTHO05D007909 4.5e-72 275.0 195 74.9
Peaxi162Scf00983g00015 Petunia axillaris HOM05D006252 ORTHO05D007909 7.6e-72 274.2 189 77.8
Ca_19323_v3 Cicer arietinum L. HOM05D006252 ORTHO05D007909 2.2e-71 272.7 201 73.1
ATR0043G002 Amborella trichopoda HOM05D006252 ORTHO05D007909 4.9e-71 271.6 163 88.3
Solyc11g066410.2 Solanum lycopersicum HOM05D006252 ORTHO05D007909 6.4e-71 271.2 191 74.3
MBI02_g05768_MAGBIO Magnolia biondii HOM05D006252 ORTHO05D007909 1.4e-70 270.0 159 89.9
arahy.Tifrunner.gnm1.ann1.Q498P0 Arachis hypogaea HOM05D006252 ORTHO05D007909 1.9e-70 269.6 199 74.9
arahy.Tifrunner.gnm1.ann1.4A8W5C Arachis hypogaea HOM05D006252 ORTHO05D007909 2.4e-70 269.2 199 74.9
Lj3g0021853 Lotus japonicus HOM05D006252 ORTHO05D007909 2.4e-70 269.2 195 73.3
Lalb_Chr19g0136901 Lupinus albus HOM05D006252 ORTHO05D007909 2.4e-70 269.2 195 75.9
Sopen11g026160 Solanum pennellii HOM05D006252 ORTHO05D007909 2.4e-70 269.2 191 74.3
Nitab4.5_0005665g0020 Nicotiana tabacum HOM05D006252 ORTHO05D007909 3.2e-70 268.9 191 74.9
Psat7g223760 Pisum sativum HOM05D006252 ORTHO05D007909 3.2e-70 268.9 193 73.1
Lj2A1006G34 Lonicera japonica HOM05D006252 ORTHO05D007909 4.2e-70 268.5 198 72.7
PGSC0003DMG400000456 Solanum tuberosum HOM05D006252 ORTHO05D007909 5.5e-70 268.1 191 73.3
Lalb_Chr03g0027721 Lupinus albus HOM05D006252 ORTHO05D007909 9.3e-70 267.3 195 74.9
SGA_v2.0_scaffold277G46698 Striga asiatica HOM05D006252 ORTHO05D007909 9.3e-70 267.3 201 71.1
Rhsim01G0210400 Rhododendron simsii HOM05D006252 ORTHO05D007909 1.6e-69 266.5 194 72.2
ECA233G2302 Erigeron canadensis HOM05D006252 ORTHO05D007909 2.7e-69 265.8 204 72.1
TPR.G36832 Trifolium pratense HOM05D006252 ORTHO05D007909 4.6e-69 265.0 193 72.5
Medtr4g057210 Medicago truncatula HOM05D006252 ORTHO05D007909 7.9e-69 264.2 198 72.7
HPP92_003365 Vanilla planifolia HOM05D006252 ORTHO05D007909 1.0e-68 263.8 165 80.6
unitig_746.g26615 Utricularia gibba HOM05D006252 ORTHO05D007909 6.7e-68 261.2 157 86.0
Hund01525 Selenicereus undatus HOM05D006252 ORTHO05D007909 3.3e-67 258.8 189 74.1
Nitab4.5_0000173g0140 Nicotiana tabacum HOM05D006252 ORTHO05D007909 1.3e-66 256.9 190 74.2
Dinv16227 Davidia involucrata HOM05D006252 ORTHO05D007909 9.3e-62 240.7 148 85.8
Zm00001eb258190 Zea mays HOM05D006252 ORTHO05D007909 1.6e-61 240.0 198 62.6
Mapoly0005s0034 Marchantia polymorpha HOM05D006252 ORTHO05D007909 1.5e-48 196.8 166 59.0
AagrBONN_evm.TU.Sc2ySwM_362.2261 Anthoceros agrestis HOM05D006252 ORTHO05D007909 1.3e-47 193.7 170 53.5
Sc21g0000330 Simmondsia chinensis HOM05D006252 ORTHO05D007909 1.1e-46 190.7 139 72.7
Haze_24363 Corylus avellana HOM05D006252 ORTHO05D007909 3.9e-44 182.2 105 90.5
Pp3c1_5300 Physcomitrium patens HOM05D006252 ORTHO05D007909 2.4e-41 172.9 159 53.5
Pp3c1_5320 Physcomitrium patens HOM05D006252 ORTHO05D007909 2.4e-41 172.9 159 53.5
CBR_g36656 Chara braunii HOM05D006252 ORTHO05D007909 5.3e-41 171.8 160 52.5
Pp3c2_34110 Physcomitrium patens HOM05D006252 ORTHO05D007909 5.3e-41 171.8 159 52.8
Pp3c2_34120 Physcomitrium patens HOM05D006252 ORTHO05D007909 5.3e-41 171.8 159 52.8
arahy.Tifrunner.gnm1.ann1.151HRH Arachis hypogaea HOM05D006252 ORTHO05D007909 5.0e-39 165.2 103 83.5
Oeu007732.1 Olea europaea HOM05D006252 ORTHO05D007909 8.5e-39 164.5 94 91.5
SMO118G0111 Selaginella moellendorffii HOM05D006252 ORTHO05D007909 3.2e-38 162.5 159 50.3
Thhalv10023194m.g Eutrema salsugineum HOM05D006252 ORTHO05D007909 4.7e-37 158.7 102 80.4
arahy.Tifrunner.gnm1.ann1.RBN82M Arachis hypogaea HOM05D006252 ORTHO05D007909 1.5e-35 153.7 103 79.6
Actinidia24149 Actinidia chinensis HOM05D006252 ORTHO05D007909 3.5e-32 142.5 114 70.2
arahy.Tifrunner.gnm1.ann1.EI3IVH Arachis hypogaea HOM05D006252 ORTHO05D007909 5.5e-30 135.2 90 81.1
Haze_24362 Corylus avellana HOM05D006252 ORTHO05D007909 1.0e-28 131.0 90 75.6
SEGI_37172 Sequoiadendron giganteum HOM05D006252 ORTHO05D007909 1.5e-27 127.1 86 72.1
arahy.Tifrunner.gnm1.ann1.8D185T Arachis hypogaea HOM05D006252 ORTHO05D005826 2.7e-24 116.3 71 84.5
Cre12.g556050 Chlamydomonas reinhardtii HOM05D006252 ORTHO05D007909 1.7e-23 113.6 158 38.6
Oeu007731.1 Olea europaea HOM05D006252 ORTHO05D007909 1.6e-21 107.1 91 60.4
MCO03G269 Micromonas commoda HOM05D006252 ORTHO05D007909 3.0e-20 102.8 155 34.8
arahy.Tifrunner.gnm1.ann1.KIT0HG Arachis hypogaea HOM05D006252 ORTHO05D007909 2.8e-18 96.3 88 62.5
PRCOL_00001763 Prasinoderma coloniale HOM05D006252 ORTHO05D007909 2.4e-17 93.2 159 32.1
SEGI_26717 Sequoiadendron giganteum HOM05D006252 ORTHO05D007909 1.6e-16 90.5 72 61.1
MELO3C029084.2 Cucumis melo HOM05D006252 ORTHO05D007909 6.1e-13 78.6 120 45.0
Ca_29226_v3 Cicer arietinum L. HOM05D006252 ORTHO05D008725 4.0e-12 75.9 156 32.7
arahy.Tifrunner.gnm1.ann1.TR51Z4 Arachis hypogaea HOM05D006252 ORTHO05D007909 4.9e-10 68.9 44 72.7
Zm00001eb258210 Zea mays HOM05D000274 ORTHO05D006772 2.4e-09 66.6 96 42.7
arahy.Tifrunner.gnm1.ann1.LGS4T1 Arachis hypogaea HOM05D006252 ORTHO05D007909 8.6e-07 58.2 48 64.6


User provided reference genes

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