Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G152042 Manihot esculenta HOM05D007663 ORTHO05D009455 2.7e-205 718.8 451 100.0
Manes.11G152127 Manihot esculenta HOM05D007663 ORTHO05D009455 9.0e-145 517.7 479 71.6
Manes.11G152176 Manihot esculenta HOM05D007663 ORTHO05D009455 3.9e-140 502.3 479 69.7
Manes.11G152141 Manihot esculenta HOM05D007663 ORTHO05D009455 2.2e-127 459.9 455 69.7
Manes.07G134100 Manihot esculenta HOM05D007663 ORTHO05D009455 1.6e-125 453.8 479 66.0
Manes.11G152184 Manihot esculenta HOM05D007663 ORTHO05D009455 3.6e-125 452.6 275 86.2
Manes.11G152105 Manihot esculenta HOM05D007663 ORTHO05D009455 1.3e-122 444.1 310 87.7
Manes.11G152170 Manihot esculenta HOM05D007663 ORTHO05D009455 1.2e-120 437.6 400 72.8
Manes.05G009249 Manihot esculenta HOM05D007663 ORTHO05D009455 7.2e-118 428.3 310 85.2
Manes.07G064632 Manihot esculenta HOM05D007663 ORTHO05D009455 8.0e-101 371.7 479 59.1
QL08p063638 Quercus lobata HOM05D007663 ORTHO05D009455 2.7e-88 330.1 476 51.5
Dinv21764 Davidia involucrata HOM05D007663 ORTHO05D009455 1.9e-86 323.9 482 52.1
Sabra10G0142400 Salix brachista HOM05D007663 ORTHO05D009455 3.3e-86 323.2 469 53.3
TAR633G2105 Trochodendron aralioides HOM05D007663 ORTHO05D009455 9.8e-83 311.6 483 49.5
CANSAT56G3657 Cannabis sativa HOM05D007663 ORTHO05D009455 7.0e-81 305.4 471 50.3
CSS0001014 Camellia sinensis var. sinensis HOM05D007663 ORTHO05D009455 1.0e-79 301.6 483 49.9
CSS0017188 Camellia sinensis var. sinensis HOM05D007663 ORTHO05D009455 1.0e-79 301.6 483 49.9
Haze_17265 Corylus avellana HOM05D007663 ORTHO05D009455 5.0e-79 299.3 476 50.2
Cpa.g.sc65.132 Carica papaya HOM05D007663 ORTHO05D009455 8.6e-79 298.5 482 49.4
TWI73G0671 Tripterygium wilfordii HOM05D007663 ORTHO05D009455 8.6e-79 298.5 482 50.2
Nn2g10961 Nelumbo nucifera HOM05D007663 ORTHO05D009455 4.3e-78 296.2 481 47.6
Cfa001285 Carpinus fangiana HOM05D000718 ORTHO05D006723 2.8e-77 293.5 467 50.7
Potri.010G185200 Populus trichocarpa HOM05D007663 ORTHO05D009455 4.0e-76 289.7 252 63.1
vmacro17693 Vaccinium macrocarpon HOM05D007663 ORTHO05D009455 2.6e-75 287.0 467 48.2
Duzib128G1882 Durio zibethinus HOM05D007663 ORTHO05D009455 2.2e-74 283.9 481 46.6
CiPaw.01G301100 Carya illinoinensis HOM05D007663 ORTHO05D009455 3.2e-73 280.0 466 49.4
Ciclev10031427m.g Citrus clementina HOM05D007663 ORTHO05D009455 1.3e-71 274.6 480 50.0
Actinidia33912 Actinidia chinensis HOM05D007663 ORTHO05D009455 1.6e-69 267.7 276 56.2
Lsat_1_v5_gn_2_124440 Lactuca sativa HOM05D007663 ORTHO05D009455 1.6e-69 267.7 476 39.5
Rhsim03G0146000 Rhododendron simsii HOM05D007663 ORTHO05D009455 2.1e-69 267.3 467 47.1
Cc02_g05740 Coffea canephora HOM05D007663 ORTHO05D009455 4.0e-68 263.1 469 41.8
COL.COLO4_25779 Corchorus olitorius HOM05D007663 ORTHO05D009455 5.2e-68 262.7 478 44.4
Nitab4.5_0000409g0130 Nicotiana tabacum HOM05D007663 ORTHO05D009455 2.6e-67 260.4 468 45.3
Thecc.10G011700 Theobroma cacao HOM05D007663 ORTHO05D009455 4.4e-67 259.6 276 53.3
HanXRQChr14g0459391 Helianthus annuus HOM05D007663 ORTHO05D009455 2.2e-66 257.3 479 42.6
PGSC0003DMG400027722 Solanum tuberosum HOM05D007663 ORTHO05D009455 1.1e-65 255.0 482 44.6
Solyc03g095860.3 Solanum lycopersicum HOM05D007663 ORTHO05D009455 4.1e-65 253.1 482 44.2
Atru.chr12.76 Acer truncatum HOM05D007663 ORTHO05D009455 9.2e-65 251.9 266 55.6
Sopen03g025840 Solanum pennellii HOM05D007663 ORTHO05D009455 1.2e-64 251.5 482 43.4
Migut.F00643 Erythranthe guttata HOM05D007663 ORTHO05D009455 4.6e-64 249.6 471 44.4
vmacro06952 Vaccinium macrocarpon HOM05D007663 ORTHO05D009455 4.6e-64 249.6 264 55.3
CAN.G156.14 Capsicum annuum HOM05D007663 ORTHO05D009455 1.7e-63 247.7 478 44.4
GSVIVG01032765001 Vitis vinifera HOM05D007663 ORTHO05D009455 1.9e-62 244.2 475 37.5
Lj8A63T91 Lonicera japonica HOM05D007663 ORTHO05D009455 4.3e-62 243.0 474 38.0
ECA238G2021 Erigeron canadensis HOM05D007663 ORTHO05D009455 6.2e-61 239.2 483 43.9
SalBow3G1672 Salvia bowleyana HOM05D007663 ORTHO05D009455 8.1e-61 238.8 465 44.1
Nitab4.5_0001222g0010 Nicotiana tabacum HOM05D007663 ORTHO05D009455 1.2e-59 235.0 477 42.1
Aqoxy2G00815 Aquilegia oxysepala HOM05D007663 ORTHO05D009455 3.7e-58 229.9 480 43.5
MBI15_g12399_MAGBIO Magnolia biondii HOM05D007663 ORTHO05D009455 3.7e-58 229.9 492 41.1
Gorai.012G078700 Gossypium raimondii HOM05D007663 ORTHO05D009455 8.3e-58 228.8 479 43.4
Manes.07G133005 Manihot esculenta HOM05D007663 ORTHO05D009455 1.9e-57 227.6 455 46.8
Prupe.2G254900 Prunus persica HOM05D007663 ORTHO05D009455 1.6e-56 224.6 279 49.1
Gohir.D04G070200 Gossypium hirsutum HOM05D007663 ORTHO05D009455 2.7e-56 223.8 482 42.9
Peaxi162Scf00304g00013 Petunia axillaris HOM05D007663 ORTHO05D009455 1.1e-54 218.4 368 47.6
MD01G1157100 Malus domestica HOM05D007663 ORTHO05D009455 1.5e-54 218.0 474 36.5
Manes.07G133012 Manihot esculenta HOM05D007663 ORTHO05D009455 5.6e-54 216.1 287 61.7
Manes.11G152190 Manihot esculenta HOM05D007663 ORTHO05D009455 1.2e-53 214.9 145 98.6
Gohir.A05G331600 Gossypium hirsutum HOM05D007663 ORTHO05D009455 1.4e-52 211.5 478 41.2
MSTRG.27307 Avicennia marina HOM05D007663 ORTHO05D009455 3.1e-52 210.3 468 41.7
DCAR_010462 Daucus carota HOM05D007663 ORTHO05D009455 5.8e-51 206.1 474 40.1
RcHm_v2.0_Chr1g0370871 Rosa chinensis HOM05D007663 ORTHO05D009455 6.4e-50 202.6 287 47.7
arahy.Tifrunner.gnm1.ann1.CJK2YY Arachis hypogaea HOM05D007663 ORTHO05D009455 7.8e-48 195.7 289 45.7
arahy.Tifrunner.gnm1.ann1.QDW8X7 Arachis hypogaea HOM05D007663 ORTHO05D009455 1.0e-47 195.3 289 45.7
VMungo0647G1650 Vigna mungo HOM05D007663 ORTHO05D009455 2.1e-45 187.6 268 46.6
Glyma.02G263600 Glycine max HOM05D007663 ORTHO05D009455 1.8e-44 184.5 307 40.7
LjContig00357g0015684 Lotus japonicus HOM05D007663 ORTHO05D009455 4.4e-43 179.9 277 43.0
Ca_05987_v3 Cicer arietinum L. HOM05D007663 ORTHO05D009455 9.9e-43 178.7 285 42.8
Manes.07G064566 Manihot esculenta HOM05D000718 ORTHO05D009455 1.7e-42 177.9 166 63.9
Phvul.008G221600 Phaseolus vulgaris HOM05D007663 ORTHO05D009455 4.9e-42 176.4 266 44.4
Lalb_Chr04g0250441 Lupinus albus HOM05D007663 ORTHO05D009455 1.1e-41 175.3 293 43.0
FvH4_7g24970 Fragaria vesca HOM05D007663 ORTHO05D009455 3.9e-39 166.8 185 53.5
FAN06G1368 Fragaria x ananassa HOM05D007663 ORTHO05D009455 3.9e-39 166.8 185 53.5
Psat2g031520 Pisum sativum HOM05D007663 ORTHO05D009455 5.1e-39 166.4 204 49.0
FAN03G1333 Fragaria x ananassa HOM05D007663 ORTHO05D009455 1.9e-38 164.5 276 43.1
Atru.chr12.71 Acer truncatum HOM05D007663 ORTHO05D009455 2.5e-38 164.1 266 42.9
Medtr8g056020 Medicago truncatula HOM05D007663 ORTHO05D009455 9.6e-38 162.2 279 41.6
FAN01G2334 Fragaria x ananassa HOM05D007663 ORTHO05D009455 1.3e-37 161.8 186 52.2
PGR044G1292 Punica granatum HOM05D007663 ORTHO05D009455 3.8e-34 150.2 271 40.6
SGA_v2.0_scaffold44G16663 Striga asiatica HOM05D007663 ORTHO05D009455 4.2e-33 146.7 196 45.4
Eucgr.J00178 Eucalyptus grandis HOM05D007663 ORTHO05D009455 1.6e-32 144.8 192 47.9
Os01g0829100 Oryza sativa ssp. japonica HOM05D007663 ORTHO05D009455 4.6e-32 143.3 469 29.6
Actinidia29715 Actinidia chinensis HOM05D007663 ORTHO05D009455 1.9e-30 137.9 156 53.8
Zm00001eb368510 Zea mays HOM05D007663 ORTHO05D009455 1.6e-29 134.8 472 30.5
TPR.G38411 Trifolium pratense HOM05D007663 ORTHO05D009455 5.5e-25 119.8 265 35.5
CANSAT35G1813 Cannabis sativa HOM05D007663 ORTHO05D009455 2.5e-22 110.9 137 75.2
SEGI_12817 Sequoiadendron giganteum HOM05D007663 ORTHO05D009455 1.7e-18 98.2 195 36.4
Mapoly0012s0013 Marchantia polymorpha HOM05D006239 ORTHO05D009455 1.0e-15 89.0 194 33.5
CANSAT56G2616 Cannabis sativa HOM05D007663 ORTHO05D009455 6.3e-13 79.7 134 53.7
FAN10G3031 Fragaria x ananassa HOM05D007663 ORTHO05D009455 1.5e-11 75.1 57 63.2
Solyc09g074280.1 Solanum lycopersicum HOM05D007464 ORTHO05D009388 2.6e-11 74.3 441 28.3
Oeu059718.1 Olea europaea HOM05D007663 ORTHO05D009455 3.4e-11 73.9 63 60.3
Nitab4.5_0008256g0020 Nicotiana tabacum HOM05D007464 ORTHO05D009388 4.5e-11 73.6 444 28.8
Sopen09g029110 Solanum pennellii HOM05D007464 ORTHO05D009388 1.7e-10 71.6 441 27.9
Actinidia00714 Actinidia chinensis HOM05D007464 ORTHO05D009388 8.5e-10 69.3 447 28.6
CiPaw.07G097200 Carya illinoinensis HOM05D007464 ORTHO05D009388 2.5e-09 67.8 146 44.5
Duzib128G1513 Durio zibethinus HOM05D006239 ORTHO05D008159 9.4e-09 65.9 456 27.9
HPP92_013668 Vanilla planifolia HOM05D007464 ORTHO05D009388 1.2e-08 65.5 281 28.8
FvH4_2g24420 Fragaria vesca HOM05D007464 ORTHO05D009388 4.6e-08 63.5 458 30.3
FAN24G2954 Fragaria x ananassa HOM05D007464 ORTHO05D009388 4.6e-08 63.5 458 30.3
Sopen09g029120 Solanum pennellii HOM05D007464 ORTHO05D009388 1.0e-07 62.4 147 44.2
PGR119G1331 Punica granatum HOM05D007464 ORTHO05D009388 3.9e-07 60.5 444 23.9
FAN20G1108 Fragaria x ananassa HOM05D007464 ORTHO05D009388 5.1e-07 60.1 451 31.3
RcHm_v2.0_Chr6g0292251 Rosa chinensis HOM05D007464 ORTHO05D009388 5.1e-07 60.1 279 25.4
Cpa.g.sc9.143 Carica papaya HOM05D007464 ORTHO05D009388 8.8e-07 59.3 458 19.9
FAN27G3498 Fragaria x ananassa HOM05D007464 ORTHO05D009388 8.8e-07 59.3 467 29.3
MD11G1296100 Malus domestica HOM05D007464 ORTHO05D009388 8.8e-07 59.3 282 23.0
MD03G1273500 Malus domestica HOM05D007464 ORTHO05D009388 1.1e-06 58.9 283 26.5
Potri.002G213200 Populus trichocarpa HOM05D007464 ORTHO05D009388 1.1e-06 58.9 301 25.9
PGSC0003DMG401003815 Solanum tuberosum HOM05D007464 ORTHO05D009388 1.1e-06 58.9 147 42.2
Solyc09g074290.1 Solanum lycopersicum HOM05D007464 ORTHO05D009388 1.5e-06 58.5 147 42.9
arahy.Tifrunner.gnm1.ann1.6Q5HDN Arachis hypogaea HOM05D007464 ORTHO05D009388 2.0e-06 58.2 165 37.6
MD07G1225900 Malus domestica HOM05D007663 ORTHO05D009455 2.0e-06 58.2 43 67.4
Duzib132G0814 Durio zibethinus HOM05D000413 ORTHO05D000292 2.5e-06 57.8 155 26.5
Eucgr.H01612 Eucalyptus grandis HOM05D007464 ORTHO05D009388 2.5e-06 57.8 138 45.7
PGSC0003DMG400034780 Solanum tuberosum HOM05D007464 ORTHO05D009388 2.5e-06 57.8 452 32.3
PGSC0003DMG402003815 Solanum tuberosum HOM05D007464 ORTHO05D009388 2.5e-06 57.8 452 32.3
Nitab4.5_0008984g0010 Nicotiana tabacum HOM05D007464 ORTHO05D009388 3.3e-06 57.4 147 44.2
arahy.Tifrunner.gnm1.ann1.KRYP2Z Arachis hypogaea HOM05D007464 ORTHO05D009388 4.3e-06 57.0 461 21.3
FvH4_6g13990 Fragaria vesca HOM05D002192 ORTHO05D002173 4.3e-06 57.0 145 29.0
FAN05G3723 Fragaria x ananassa HOM05D002192 ORTHO05D002173 4.3e-06 57.0 145 29.0
FAN09G1431 Fragaria x ananassa HOM05D002192 ORTHO05D002173 4.3e-06 57.0 145 29.0
FAN09G3418 Fragaria x ananassa HOM05D002192 ORTHO05D002173 4.3e-06 57.0 145 29.0
FAN14G2043 Fragaria x ananassa HOM05D002192 ORTHO05D002173 4.3e-06 57.0 145 29.0
COL.COLO4_32758 Corchorus olitorius HOM05D007663 ORTHO05D009455 5.7e-06 56.6 62 48.4
Thecc.02G088700 Theobroma cacao HOM05D000413 ORTHO05D000292 5.7e-06 56.6 155 25.2
FvH4_1g28430 Fragaria vesca HOM05D006239 ORTHO05D008159 7.4e-06 56.2 133 30.1
FAN19G2333 Fragaria x ananassa HOM05D006239 ORTHO05D008159 7.4e-06 56.2 133 30.1
FAN23G2085 Fragaria x ananassa HOM05D006239 ORTHO05D008159 7.4e-06 56.2 133 30.1
FAN28G0797 Fragaria x ananassa HOM05D006239 ORTHO05D008159 7.4e-06 56.2 133 30.1
Gohir.D13G033800 Gossypium hirsutum HOM05D000413 ORTHO05D000292 7.4e-06 56.2 155 25.2
Gorai.013G038200 Gossypium raimondii HOM05D000413 ORTHO05D000292 7.4e-06 56.2 155 25.2
Prupe.8G249900 Prunus persica HOM05D007464 ORTHO05D009388 7.4e-06 56.2 282 23.8
VMungo0720G1822 Vigna mungo HOM05D007464 ORTHO05D009388 7.4e-06 56.2 282 26.2
Zm00001eb218330 Zea mays HOM05D006239 ORTHO05D008159 7.4e-06 56.2 441 25.9


User provided reference genes

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