Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G150100 Manihot esculenta HOM05D007330 ORTHO05D009368 4.2e-84 314.7 165 100.0
Ciclev10029423m.g Citrus clementina HOM05D007330 ORTHO05D009368 2.0e-54 216.1 163 73.6
Potri.009G008400 Populus trichocarpa HOM05D007330 ORTHO05D009368 1.0e-53 213.8 165 71.5
Thecc.09G347600 Theobroma cacao HOM05D007330 ORTHO05D009368 4.7e-51 204.9 165 66.1
GSVIVG01031517001 Vitis vinifera HOM05D000070 ORTHO05D001255 1.1e-50 203.8 163 71.8
CiPaw.13G117900 Carya illinoinensis HOM05D007330 ORTHO05D009368 1.4e-50 203.4 162 72.8
TAR636G1893 Trochodendron aralioides HOM05D007330 ORTHO05D009368 1.8e-50 203.0 163 69.9
CSS0040476 Camellia sinensis var. sinensis HOM05D007330 ORTHO05D009368 6.8e-50 201.1 163 68.1
Gohir.D05G106300 Gossypium hirsutum HOM05D007330 ORTHO05D009368 6.8e-50 201.1 163 66.9
Gohir.A05G106300 Gossypium hirsutum HOM05D007330 ORTHO05D009368 1.2e-49 200.3 163 66.3
Dinv34698 Davidia involucrata HOM05D007330 ORTHO05D009368 2.2e-48 196.1 165 68.5
TWI31G1101 Tripterygium wilfordii HOM05D007330 ORTHO05D009368 8.3e-48 194.1 167 67.1
Glyma.11G195100 Glycine max HOM05D007330 ORTHO05D009368 1.1e-47 193.7 128 76.6
MELO3C004968.2 Cucumis melo HOM05D007330 ORTHO05D009368 1.4e-47 193.4 165 66.1
QL01p015978 Quercus lobata HOM05D007330 ORTHO05D009368 1.4e-47 193.4 134 78.4
vmacro03274 Vaccinium macrocarpon HOM05D007330 ORTHO05D009368 1.4e-47 193.4 134 74.6
ClCG03G002650 Citrullus lanatus HOM05D007330 ORTHO05D009368 1.9e-47 193.0 165 65.5
Glyma.12G079000 Glycine max HOM05D007330 ORTHO05D009368 3.2e-47 192.2 136 72.8
CsaV3_1G013380 Cucumis sativus L. HOM05D007330 ORTHO05D009368 4.6e-46 188.3 165 64.2
Atru.chr3.3558 Acer truncatum HOM05D007330 ORTHO05D009368 6.0e-46 188.0 166 65.7
CANSAT35G1795 Cannabis sativa HOM05D007330 ORTHO05D009368 6.0e-46 188.0 129 78.3
Nn2g13766 Nelumbo nucifera HOM05D007330 ORTHO05D009368 6.0e-46 188.0 160 65.6
Lalb_Chr19g0137021 Lupinus albus HOM05D007330 ORTHO05D009368 7.8e-46 187.6 135 74.1
Eucgr.J00897 Eucalyptus grandis HOM05D007330 ORTHO05D009368 1.0e-45 187.2 164 63.4
Hma1.2p1_0569F.1_g180250 Hydrangea macrophylla HOM05D007330 ORTHO05D009368 1.0e-45 187.2 162 66.0
PGR119G1592 Punica granatum HOM05D007330 ORTHO05D009368 1.3e-45 186.8 121 76.9
Rhsim13G0098500 Rhododendron simsii HOM05D007330 ORTHO05D009368 2.3e-45 186.0 155 65.2
Lj3g0015691 Lotus japonicus HOM05D007330 ORTHO05D009368 3.0e-45 185.7 132 73.5
Sed0025524 Sechium edule HOM05D007330 ORTHO05D009368 8.6e-45 184.1 167 62.9
THA.LOC104814822 Tarenaya hassleriana HOM05D007330 ORTHO05D009368 1.5e-44 183.3 165 61.8
MSTRG.18683 Avicennia marina HOM05D007330 ORTHO05D009368 1.9e-44 183.0 164 62.8
Cc01_g10610 Coffea canephora HOM05D007330 ORTHO05D009368 3.3e-44 182.2 139 67.6
FvH4_3g31190 Fragaria vesca HOM05D007330 ORTHO05D009368 3.3e-44 182.2 162 62.3
FAN11G3216 Fragaria x ananassa HOM05D007330 ORTHO05D009368 3.3e-44 182.2 162 62.3
Ca_19301_v3 Cicer arietinum L. HOM05D007330 ORTHO05D009368 7.3e-44 181.0 129 72.1
VMungo1127G0312 Vigna mungo HOM05D007330 ORTHO05D009368 7.3e-44 181.0 128 71.9
COL.COLO4_34706 Corchorus olitorius HOM05D007330 ORTHO05D009368 9.5e-44 180.6 125 74.4
RcHm_v2.0_Chr5g0057841 Rosa chinensis HOM05D007330 ORTHO05D009368 1.2e-43 180.3 125 72.8
FAN25G0306 Fragaria x ananassa HOM05D007330 ORTHO05D009368 2.1e-43 179.5 162 61.1
Migut.N02576 Erythranthe guttata HOM05D007330 ORTHO05D009368 3.6e-43 178.7 166 59.6
FAN21G2017 Fragaria x ananassa HOM05D007330 ORTHO05D009368 8.1e-43 177.6 125 71.2
BcaB05g23421 Brassica carinata HOM05D007330 ORTHO05D009368 1.8e-42 176.4 129 73.6
MBI18_g25263_MAGBIO Magnolia biondii HOM05D007330 ORTHO05D009368 1.8e-42 176.4 177 57.6
DCAR_018785 Daucus carota HOM05D007330 ORTHO05D009368 3.1e-42 175.6 116 77.6
BcaC09g49699 Brassica carinata HOM05D007330 ORTHO05D009368 4.0e-42 175.3 129 73.6
A01p26570 Brassica napus HOM05D007330 ORTHO05D009368 4.0e-42 175.3 129 73.6
C01p33810 Brassica napus HOM05D007330 ORTHO05D009368 4.0e-42 175.3 129 73.6
BolC1t03342H Brassica oleracea HOM05D007330 ORTHO05D009368 4.0e-42 175.3 129 73.6
BraA01t02587Z Brassica rapa HOM05D007330 ORTHO05D009368 4.0e-42 175.3 129 73.6
Ah.01g003130 Amaranthus hybridus HOM05D007330 ORTHO05D009368 6.8e-42 174.5 143 64.3
arahy.Tifrunner.gnm1.ann1.V5GM9G Arachis hypogaea HOM05D007330 ORTHO05D009368 3.4e-41 172.2 138 68.8
Thhalv10002688m.g Eutrema salsugineum HOM05D007330 ORTHO05D009368 5.8e-41 171.4 114 79.8
Medtr4g057845 Medicago truncatula HOM05D007330 ORTHO05D009368 9.9e-41 170.6 136 67.6
Aa31LG4G14100 Aethionema arabicum HOM05D007330 ORTHO05D009368 1.7e-40 169.9 124 72.6
arahy.Tifrunner.gnm1.ann1.PP0PHB Arachis hypogaea HOM05D007330 ORTHO05D009368 1.7e-40 169.9 135 68.9
Lsat_1_v5_gn_1_63180 Lactuca sativa HOM05D007330 ORTHO05D009368 1.7e-40 169.9 123 72.4
ECA248G2053 Erigeron canadensis HOM05D007330 ORTHO05D009368 4.9e-40 168.3 121 72.7
HanXRQChr11g0346411 Helianthus annuus HOM05D007330 ORTHO05D009368 4.9e-40 168.3 121 73.6
Actinidia07167 Actinidia chinensis HOM05D007330 ORTHO05D009368 6.4e-40 167.9 167 58.7
SGA_v2.0_scaffold116G32214 Striga asiatica HOM05D007330 ORTHO05D009368 1.1e-39 167.2 102 79.4
CAN.G1577.6 Capsicum annuum HOM05D007330 ORTHO05D009368 1.4e-39 166.8 165 60.0
Sopen04g002470 Solanum pennellii HOM05D007330 ORTHO05D009368 1.9e-39 166.4 147 59.9
Nitab4.5_0000567g0040 Nicotiana tabacum HOM05D007330 ORTHO05D009368 2.4e-39 166.0 125 67.2
Sp5g16210 Schrenkiella parvula HOM05D007330 ORTHO05D009368 5.4e-39 164.9 130 71.5
Sc15g0001620 Simmondsia chinensis HOM05D007330 ORTHO05D009368 9.2e-39 164.1 126 67.5
CDE09G0261 Ceratophyllum demersum HOM05D007330 ORTHO05D008128 1.2e-38 163.7 123 68.3
PSO339G1528 Papaver somniferum HOM05D007330 ORTHO05D009368 1.2e-38 163.7 164 55.5
Solyc04g007410.4 Solanum lycopersicum HOM05D007330 ORTHO05D009368 1.2e-38 163.7 147 59.2
MD11G1142300 Malus domestica HOM05D007330 ORTHO05D009368 1.6e-38 163.3 162 58.6
Psat4g155560 Pisum sativum HOM05D007330 ORTHO05D009368 2.1e-38 162.9 122 69.7
CARHR150920 Cardamine hirsuta HOM05D007330 ORTHO05D009368 4.6e-38 161.8 162 59.9
Carub.0005s1083 Capsella rubella HOM05D007330 ORTHO05D009368 3.9e-37 158.7 157 59.2
AT3G45050 Arabidopsis thaliana HOM05D007330 ORTHO05D009368 1.9e-36 156.4 164 59.8
Phvul.011G083600 Phaseolus vulgaris HOM05D007330 ORTHO05D009368 4.3e-36 155.2 95 78.9
PSO801G0259 Papaver somniferum HOM05D007330 ORTHO05D009368 1.6e-35 153.3 162 53.7
AUR62022766 Chenopodium quinoa HOM05D007330 ORTHO05D009368 2.1e-35 152.9 134 60.4
Sabra09G0004900 Salix brachista HOM05D007330 ORTHO05D009368 8.1e-35 151.0 137 63.5
Peaxi162Scf00064g00193 Petunia axillaris HOM05D007330 ORTHO05D009368 2.4e-34 149.4 170 54.1
Gorai.009G110400 Gossypium raimondii HOM05D007330 ORTHO05D009368 5.2e-34 148.3 137 61.3
Prupe.6G107600 Prunus persica HOM05D007330 ORTHO05D009368 4.9e-32 141.7 138 60.1
AL5G23540 Arabidopsis lyrata HOM05D007330 ORTHO05D009368 4.6e-30 135.2 120 62.5
Peaxi162Scf00597g00033 Petunia axillaris HOM05D007330 ORTHO05D009368 7.8e-30 134.4 158 52.5
HPP92_007165 Vanilla planifolia HOM05D007330 ORTHO05D009368 1.3e-29 133.7 119 61.3
Lj1A195G28 Lonicera japonica HOM05D007330 ORTHO05D009368 1.7e-29 133.3 153 53.6
Cpa.g.sc65.31 Carica papaya HOM05D007330 ORTHO05D009368 1.5e-28 130.2 95 71.6
Lj1C194T4 Lonicera japonica HOM05D007330 ORTHO05D009368 1.3e-27 127.1 98 70.4
Nitab4.5_0003325g0010 Nicotiana tabacum HOM05D007330 ORTHO05D009368 2.1e-27 126.3 129 56.6
Aqoxy2G01788 Aquilegia oxysepala HOM05D007330 ORTHO05D009368 6.2e-27 124.8 113 65.5
PGSC0003DMG400005973 Solanum tuberosum HOM05D007330 ORTHO05D009368 2.4e-26 122.9 91 71.4
SEGI_17989 Sequoiadendron giganteum HOM05D007330 ORTHO05D009368 6.9e-26 121.3 111 54.1
Hund08155 Selenicereus undatus HOM05D007330 ORTHO05D009368 4.9e-24 115.2 113 55.8
Peaxi162Scf00958g00023 Petunia axillaris HOM05D007330 ORTHO05D009368 1.4e-23 113.6 92 67.4
Pp3c18_13360 Physcomitrium patens HOM05D007330 ORTHO05D009368 2.4e-23 112.8 123 48.8
Haze_23760 Corylus avellana HOM05D007330 ORTHO05D009368 1.6e-22 110.2 174 44.3
Os06g0731300 Oryza sativa ssp. japonica HOM05D007330 ORTHO05D009368 1.8e-21 106.7 71 63.4
CBR_g54316 Chara braunii HOM05D007330 ORTHO05D009368 4.3e-20 102.1 115 47.0
AagrBONN_evm.TU.Sc2ySwM_228.4164 Anthoceros agrestis HOM05D007330 ORTHO05D009368 7.4e-20 101.3 115 47.8
MD03G1125100 Malus domestica HOM05D007330 ORTHO05D009368 2.6e-17 92.8 127 45.7
AUR62029217 Chenopodium quinoa HOM05D007330 ORTHO05D009368 5.8e-17 91.7 123 48.8
Mapoly0184s0021 Marchantia polymorpha HOM05D007330 ORTHO05D009368 3.8e-16 89.0 119 43.7
SMO367G0878 Selaginella moellendorffii HOM05D007330 ORTHO05D009368 5.5e-15 85.1 142 36.6
SMO275G0064 Selaginella moellendorffii HOM05D007330 ORTHO05D009368 2.1e-14 83.2 128 39.1
arahy.Tifrunner.gnm1.ann1.N36MJA Arachis hypogaea HOM05D007330 ORTHO05D009368 1.3e-13 80.5 67 62.7
EL10Ac9g22568 Beta vulgaris HOM05D007330 ORTHO05D009368 4.8e-11 72.0 124 39.5
Oeu013536.1 Olea europaea HOM05D000070 ORTHO05D001255 1.4e-07 60.5 69 53.6
Actinidia24129 Actinidia chinensis HOM05D000070 ORTHO05D001255 1.9e-07 60.1 75 52.0


User provided reference genes

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