Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G148800 Manihot esculenta HOM05D008179 ORTHO05D009362 9.3e-242 839.7 408 100.0
Manes.04G017300 Manihot esculenta HOM05D008179 ORTHO05D009362 5.7e-82 308.9 363 48.8
Manes.04G017200 Manihot esculenta HOM05D008179 ORTHO05D009362 1.3e-81 307.8 364 48.1
QL93p0073_1249 Quercus lobata HOM05D008179 ORTHO05D009362 2.6e-42 177.2 367 33.8
TAR624G0619 Trochodendron aralioides HOM05D008179 ORTHO05D009362 2.3e-38 164.1 355 34.6
Dinv18943 Davidia involucrata HOM05D008179 ORTHO05D009362 3.0e-38 163.7 266 39.1
Lj1C1222T5 Lonicera japonica HOM05D008179 ORTHO05D009362 9.6e-37 158.7 351 32.8
DCAR_008113 Daucus carota HOM05D008179 ORTHO05D009362 1.2e-34 151.8 351 33.9
RcHm_v2.0_Chr5g0021181 Rosa chinensis HOM05D008179 ORTHO05D009362 9.9e-34 148.7 360 31.1
QL05p077156 Quercus lobata HOM05D008179 ORTHO05D009362 2.9e-33 147.1 352 32.1
Hma1.2p1_1682F.1_g297310 Hydrangea macrophylla HOM05D008179 ORTHO05D009362 8.4e-33 145.6 367 30.5
DCAR_008111 Daucus carota HOM05D008179 ORTHO05D009362 1.2e-31 141.7 345 31.9
Dinv18942 Davidia involucrata HOM05D008179 ORTHO05D009362 1.2e-31 141.7 265 35.8
SalBow8G3222 Salvia bowleyana HOM05D008179 ORTHO05D009362 2.1e-31 141.0 336 31.0
MD10G1212400 Malus domestica HOM05D008179 ORTHO05D009362 1.3e-30 138.3 354 32.8
Prupe.4G130300 Prunus persica HOM05D008179 ORTHO05D009362 1.9e-29 134.4 374 30.5
Lj1C1222G5 Lonicera japonica HOM05D008179 ORTHO05D009362 5.6e-29 132.9 344 29.9
DCAR_008110 Daucus carota HOM05D008179 ORTHO05D009362 7.4e-29 132.5 333 33.3
FAN14G5443 Fragaria x ananassa HOM05D008179 ORTHO05D009362 1.6e-28 131.3 349 32.1
FAN15G0940 Fragaria x ananassa HOM05D008179 ORTHO05D009362 4.8e-28 129.8 394 29.2
Prupe.4G130000 Prunus persica HOM05D008179 ORTHO05D009362 4.8e-28 129.8 348 30.7
RcHm_v2.0_Chr3g0478691 Rosa chinensis HOM05D008179 ORTHO05D009362 1.4e-27 128.3 342 29.2
Prupe.4G219900 Prunus persica HOM05D008179 ORTHO05D009362 3.1e-27 127.1 366 31.7
RcHm_v2.0_Chr3g0479021 Rosa chinensis HOM05D008179 ORTHO05D009362 4.0e-27 126.7 349 31.8
Prupe.4G112200 Prunus persica HOM05D008179 ORTHO05D009362 1.5e-26 124.8 349 28.9
Oeu062972.1 Olea europaea HOM05D008179 ORTHO05D009362 1.0e-25 122.1 340 28.2
RcHm_v2.0_Chr5g0004511 Rosa chinensis HOM05D008179 ORTHO05D009362 2.5e-24 117.5 348 31.9
Prupe.4G220100 Prunus persica HOM05D008179 ORTHO05D009362 5.5e-24 116.3 346 28.9
Prupe.4G219800 Prunus persica HOM05D008179 ORTHO05D009362 2.1e-23 114.4 288 34.0
FAN14G0841 Fragaria x ananassa HOM05D008179 ORTHO05D009362 1.0e-22 112.1 276 31.9
MD05G1336100 Malus domestica HOM05D008179 ORTHO05D009362 5.1e-22 109.8 352 29.0
FvH4_6g21740 Fragaria vesca HOM05D008179 ORTHO05D009362 6.7e-22 109.4 276 31.5
MD10G1311600 Malus domestica HOM05D008179 ORTHO05D009362 6.7e-22 109.4 278 32.7
MD05G1336000 Malus domestica HOM05D008179 ORTHO05D009362 1.5e-21 108.2 296 31.1
RcHm_v2.0_Chr5g0019881 Rosa chinensis HOM05D008179 ORTHO05D009362 2.1e-20 104.4 288 29.2
SGA_v2.0_scaffold114G32014 Striga asiatica HOM05D008179 ORTHO05D009362 4.8e-20 103.2 347 27.4
SGA_v2.0_scaffold7G03894 Striga asiatica HOM05D008179 ORTHO05D009362 1.5e-18 98.2 341 25.8
Hma1.2p1_1682F.1_g297290 Hydrangea macrophylla HOM05D008179 ORTHO05D009362 2.0e-18 97.8 185 36.2
DCAR_008112 Daucus carota HOM05D008179 ORTHO05D009362 1.6e-15 88.2 230 34.3
TAR624G0935 Trochodendron aralioides HOM05D008179 ORTHO05D009362 3.5e-15 87.0 122 41.0
Dinv17850 Davidia involucrata HOM05D008179 ORTHO05D009362 1.5e-13 81.6 151 35.8
FAN05G4853 Fragaria x ananassa HOM05D008179 ORTHO05D009362 1.9e-13 81.3 269 28.3
Nitab4.5_0011228g0010 Nicotiana tabacum HOM05D009034 ORTHO05D009362 1.9e-13 81.3 297 30.0
CANSAT56G0601 Cannabis sativa HOM05D008179 ORTHO05D009362 7.4e-13 79.3 359 26.7
CAN.G696.2 Capsicum annuum HOM05D009034 ORTHO05D009362 1.6e-12 78.2 298 28.5
FvH4_2g03910 Fragaria vesca HOM05D008179 ORTHO05D009362 1.6e-12 78.2 200 31.5
Sopen01g051920 Solanum pennellii HOM05D009034 ORTHO05D009362 1.6e-12 78.2 284 31.0
FAN25G2419 Fragaria x ananassa HOM05D008179 ORTHO05D009362 2.8e-12 77.4 336 24.1
FvH4_6g24450 Fragaria vesca HOM05D008179 ORTHO05D009362 4.8e-12 76.6 398 25.4
Sopen01g052330 Solanum pennellii HOM05D009034 ORTHO05D009362 6.3e-12 76.3 340 25.6
SalBow6G4060 Salvia bowleyana HOM05D008179 ORTHO05D009362 3.1e-11 73.9 335 24.2
CAN.G958.3 Capsicum annuum HOM05D009034 ORTHO05D009362 4.1e-11 73.6 290 27.9
FAN02G3878 Fragaria x ananassa HOM05D008179 ORTHO05D009362 9.0e-11 72.4 266 26.3
Oeu000542.1 Olea europaea HOM05D007726 ORTHO05D008819 1.2e-10 72.0 365 24.7
Potri.001G458400 Populus trichocarpa HOM05D000007 ORTHO05D000101 2.6e-10 70.9 292 25.0
Aqoxy4G00228 Aquilegia oxysepala HOM05D000007 ORTHO05D000521 4.5e-10 70.1 302 26.5
TAR371G0430 Trochodendron aralioides HOM05D000007 ORTHO05D007252 4.5e-10 70.1 292 27.4
Nitab4.5_0003526g0010 Nicotiana tabacum HOM05D009034 ORTHO05D009362 7.7e-10 69.3 290 26.6
Sabra16G0310700 Salix brachista HOM05D000007 ORTHO05D000101 1.0e-09 68.9 292 24.3
PGSC0003DMG400036424 Solanum tuberosum HOM05D009034 ORTHO05D009362 1.0e-09 68.9 293 27.6
Nitab4.5_0010389g0020 Nicotiana tabacum HOM05D009034 ORTHO05D009362 1.3e-09 68.6 215 28.4
Peaxi162Scf00263g00093 Petunia axillaris HOM05D009034 ORTHO05D009362 2.2e-09 67.8 210 27.6
TAR371G0292 Trochodendron aralioides HOM05D000007 ORTHO05D007252 5.0e-09 66.6 292 27.1
BcaB03g14653 Brassica carinata HOM05D000209 ORTHO05D000129 6.5e-09 66.2 326 23.9
DCAR_028233 Daucus carota HOM05D008179 ORTHO05D009362 6.5e-09 66.2 196 31.6
TAR371G0093 Trochodendron aralioides HOM05D000007 ORTHO05D007252 6.5e-09 66.2 305 27.2
FAN27G1228 Fragaria x ananassa HOM05D008179 ORTHO05D009362 8.5e-09 65.9 147 34.0
TAR185G0005 Trochodendron aralioides HOM05D008437 ORTHO05D008819 8.5e-09 65.9 275 22.9
TAR381G1565 Trochodendron aralioides HOM05D007726 ORTHO05D008819 8.5e-09 65.9 360 25.0
Aqoxy5G04106 Aquilegia oxysepala HOM05D007726 ORTHO05D008819 1.1e-08 65.5 336 25.3
Nitab4.5_0009524g0020 Nicotiana tabacum HOM05D009034 ORTHO05D009362 1.1e-08 65.5 189 28.6
BcaB02g08397 Brassica carinata HOM05D000171 ORTHO05D000101 1.4e-08 65.1 316 25.9
C03p31920 Brassica napus HOM05D000171 ORTHO05D000101 2.5e-08 64.3 248 27.4
Medtr3g007360 Medicago truncatula HOM05D000007 ORTHO05D000017 2.5e-08 64.3 342 24.6
Peaxi162Scf00016g00054 Petunia axillaris HOM05D009034 ORTHO05D009362 2.5e-08 64.3 283 26.9
A06p17520 Brassica napus HOM05D000987 ORTHO05D000831 3.2e-08 63.9 313 24.9
BolC3t15534H Brassica oleracea HOM05D000171 ORTHO05D000101 3.2e-08 63.9 295 26.8
Medtr7g062100 Medicago truncatula HOM05D000007 ORTHO05D000017 3.2e-08 63.9 228 27.2
FAN22G0489 Fragaria x ananassa HOM05D008179 ORTHO05D009362 5.5e-08 63.2 209 26.3
Solyc01g109730.1 Solanum lycopersicum HOM05D009034 ORTHO05D009362 5.5e-08 63.2 189 31.7
A03p26650 Brassica napus HOM05D000171 ORTHO05D000101 9.4e-08 62.4 295 26.8
Peaxi162Scf00016g00626 Petunia axillaris HOM05D009034 ORTHO05D009362 9.4e-08 62.4 222 29.3
BraA06t24848Z Brassica rapa HOM05D000987 ORTHO05D000831 2.1e-07 61.2 316 24.7
BraA03t11876Z Brassica rapa HOM05D000171 ORTHO05D000101 2.7e-07 60.8 295 26.8
Potri.017G012200 Populus trichocarpa HOM05D000007 ORTHO05D000039 2.7e-07 60.8 379 23.0
TAR371G0451 Trochodendron aralioides HOM05D000007 ORTHO05D007252 2.7e-07 60.8 298 23.5
Sabra11G0018900 Salix brachista HOM05D008179 ORTHO05D009362 3.6e-07 60.5 43 60.5
Nitab4.5_0009524g0010 Nicotiana tabacum HOM05D009034 ORTHO05D009362 4.6e-07 60.1 194 27.3
Thhalv10022377m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 6.1e-07 59.7 150 30.0
Nn1g09439 Nelumbo nucifera HOM05D006664 ORTHO05D008819 6.1e-07 59.7 319 21.9
BcaB07g32138 Brassica carinata HOM05D000171 ORTHO05D000101 1.0e-06 58.9 291 24.4
Dinv17447 Davidia involucrata HOM05D000007 ORTHO05D000676 1.0e-06 58.9 234 28.6
HanXRQChr10g0295591 Helianthus annuus HOM05D000007 ORTHO05D000521 1.0e-06 58.9 52 48.1
Rhsim02G0204800 Rhododendron simsii HOM05D007726 ORTHO05D008819 1.0e-06 58.9 301 24.9
MSTRG.10148 Avicennia marina HOM05D000007 ORTHO05D000017 1.4e-06 58.5 60 41.7
Lsat_1_v5_gn_9_103981 Lactuca sativa HOM05D000007 ORTHO05D000521 1.4e-06 58.5 77 39.0
Phvul.006G157000 Phaseolus vulgaris HOM05D000007 ORTHO05D000017 1.4e-06 58.5 86 36.0
arahy.Tifrunner.gnm1.ann1.4W4MA0 Arachis hypogaea HOM05D000007 ORTHO05D000017 1.8e-06 58.2 477 22.2
Carub.0001s3670 Capsella rubella HOM05D000171 ORTHO05D000101 1.8e-06 58.2 296 22.6
AUR62028685 Chenopodium quinoa HOM05D000007 ORTHO05D000017 1.8e-06 58.2 49 55.1
HanXRQChr03g0074871 Helianthus annuus HOM05D000007 ORTHO05D000521 1.8e-06 58.2 236 22.5
Phvul.003G163000 Phaseolus vulgaris HOM05D000007 ORTHO05D000017 1.8e-06 58.2 68 41.2
AL4G11240 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.3e-06 57.8 301 21.6
Cfa000498 Carpinus fangiana HOM05D000007 ORTHO05D000039 2.3e-06 57.8 124 30.6
Hma1.2p1_0022F.1_g014760 Hydrangea macrophylla HOM05D000007 ORTHO05D007252 2.3e-06 57.8 315 24.8
COL.COLO4_34989 Corchorus olitorius HOM05D000007 ORTHO05D000521 3.0e-06 57.4 305 23.3
HanXRQChr08g0209381 Helianthus annuus HOM05D000007 ORTHO05D000521 3.9e-06 57.0 57 43.9
Lj1A671T54 Lonicera japonica HOM05D000007 ORTHO05D000039 3.9e-06 57.0 247 27.5
Lalb_Chr15g0087251 Lupinus albus HOM05D000007 ORTHO05D000017 3.9e-06 57.0 82 40.2
Medtr3g464470 Medicago truncatula HOM05D000007 ORTHO05D000017 3.9e-06 57.0 270 24.8
Cfa000446 Carpinus fangiana HOM05D018905 ORTHO05D000039 5.1e-06 56.6 124 29.8
Cc06_g13930 Coffea canephora HOM05D000007 ORTHO05D000521 5.1e-06 56.6 312 25.3
Lsat_1_v5_gn_6_61500 Lactuca sativa HOM05D000007 ORTHO05D000017 5.1e-06 56.6 55 47.3
Lalb_Chr20g0118311 Lupinus albus HOM05D000007 ORTHO05D000017 5.1e-06 56.6 55 49.1
Os08g0382800 Oryza sativa ssp. japonica HOM05D000007 ORTHO05D000017 5.1e-06 56.6 54 51.9
COL.COLO4_25676 Corchorus olitorius HOM05D000007 ORTHO05D000017 6.7e-06 56.2 187 26.7
COL.COLO4_29208 Corchorus olitorius HOM05D000007 ORTHO05D000521 6.7e-06 56.2 45 53.3
Gorai.010G208700 Gossypium raimondii HOM05D000007 ORTHO05D000039 6.7e-06 56.2 340 25.9
Lj5A746T19 Lonicera japonica HOM05D000007 ORTHO05D000039 6.7e-06 56.2 54 51.9
Lj5C746G5 Lonicera japonica HOM05D000007 ORTHO05D000039 6.7e-06 56.2 54 51.9
Haze_06465 Corylus avellana HOM05D000007 ORTHO05D000039 8.8e-06 55.8 51 51.0
FvH4_3g18972 Fragaria vesca HOM05D000007 ORTHO05D000039 8.8e-06 55.8 303 23.1
HanXRQChr04g0115401 Helianthus annuus HOM05D000007 ORTHO05D000521 8.8e-06 55.8 46 47.8
Lsat_1_v5_gn_9_104300 Lactuca sativa HOM05D000007 ORTHO05D000521 8.8e-06 55.8 61 47.5
Nn1g09442 Nelumbo nucifera HOM05D007726 ORTHO05D008819 8.8e-06 55.8 327 23.5
PSO017G5541 Papaver somniferum HOM05D004049 ORTHO05D004496 8.8e-06 55.8 64 50.0
Potri.001G224200 Populus trichocarpa HOM05D000007 ORTHO05D000521 8.8e-06 55.8 64 39.1


User provided reference genes

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