Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G148500 Manihot esculenta HOM05D007421 ORTHO05D009203 4.8e-169 597.8 314 100.0
TWI59G0537 Tripterygium wilfordii HOM05D007421 ORTHO05D009203 2.9e-49 199.9 332 44.0
CSS0030012 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 7.4e-45 185.3 359 40.1
CSS0048527 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 7.4e-45 185.3 360 40.6
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 6.9e-43 178.7 382 38.2
CiPaw.06G151100 Carya illinoinensis HOM05D007421 ORTHO05D009203 7.6e-42 175.3 323 43.7
Cfa005578 Carpinus fangiana HOM05D007421 ORTHO05D009203 1.0e-41 174.9 313 40.9
Sabra05G0133500 Salix brachista HOM05D007421 ORTHO05D009203 3.8e-41 172.9 315 40.0
Gorai.013G063400 Gossypium raimondii HOM05D007421 ORTHO05D009203 1.1e-40 171.4 326 40.5
Gohir.A13G065600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 1.9e-40 170.6 326 40.2
Potri.005G176900 Populus trichocarpa HOM05D007421 ORTHO05D009203 2.5e-40 170.2 315 41.3
Thecc.02G143500 Theobroma cacao HOM05D007421 ORTHO05D009203 9.3e-40 168.3 340 38.5
Dinv24220 Davidia involucrata HOM05D007421 ORTHO05D009203 1.6e-39 167.5 372 37.6
Gohir.A03G171600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 3.5e-39 166.4 342 38.0
COL.COLO4_20870 Corchorus olitorius HOM05D007321 ORTHO05D009244 1.8e-38 164.1 327 39.1
Nn5g28883 Nelumbo nucifera HOM05D007421 ORTHO05D009203 1.8e-38 164.1 305 41.3
Gorai.005G217800 Gossypium raimondii HOM05D007421 ORTHO05D009203 1.1e-37 161.4 331 38.7
TAR628G0675 Trochodendron aralioides HOM05D007421 ORTHO05D009203 1.1e-37 161.4 303 41.6
Rhsim11G0134600 Rhododendron simsii HOM05D007421 ORTHO05D009203 2.5e-37 160.2 391 37.9
Actinidia00249 Actinidia chinensis HOM05D007421 ORTHO05D009203 3.7e-36 156.4 273 41.4
Nitab4.5_0011639g0020 Nicotiana tabacum HOM05D007421 ORTHO05D009203 4.8e-36 156.0 289 37.7
Ca_18335_v3 Cicer arietinum L. HOM05D007421 ORTHO05D009203 1.1e-35 154.8 314 40.4
Lj4g0022412 Lotus japonicus HOM05D007421 ORTHO05D009203 1.5e-34 151.0 319 38.2
Cpa.g.sc0.12 Carica papaya HOM05D007421 ORTHO05D009203 2.6e-34 150.2 352 34.1
vmacro01809 Vaccinium macrocarpon HOM05D007421 ORTHO05D009203 5.0e-33 146.0 375 34.9
EL10Ac8g19356 Beta vulgaris HOM05D007421 ORTHO05D009203 1.1e-32 144.8 310 36.5
Sed0000945 Sechium edule HOM05D007421 ORTHO05D009203 1.9e-32 144.1 321 38.6
CAN.G1034.36 Capsicum annuum HOM05D007421 ORTHO05D009203 3.2e-32 143.3 324 34.6
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 7.2e-32 142.1 247 42.1
ClCG09G021300 Citrullus lanatus HOM05D007421 ORTHO05D009203 9.3e-32 141.7 328 35.7
Gohir.D13G056100 Gossypium hirsutum HOM05D007421 ORTHO05D009203 9.3e-32 141.7 219 41.1
Haze_10776 Corylus avellana HOM05D007421 ORTHO05D009203 1.3e-30 137.9 313 37.1
TPR.G10446 Trifolium pratense HOM05D007421 ORTHO05D009203 1.3e-30 137.9 355 36.3
Cc02_g21850 Coffea canephora HOM05D007421 ORTHO05D009203 3.0e-30 136.7 343 37.6
Sopen10g016990 Solanum pennellii HOM05D007421 ORTHO05D009203 3.9e-30 136.3 281 37.7
DCAR_029217 Daucus carota HOM05D007421 ORTHO05D009203 5.1e-30 136.0 287 38.3
CsaV3_7G012710 Cucumis sativus L. HOM05D007421 ORTHO05D009203 6.7e-30 135.6 329 33.7
Nitab4.5_0000078g0170 Nicotiana tabacum HOM05D007421 ORTHO05D009203 6.7e-30 135.6 306 34.3
Solyc10g047040.3 Solanum lycopersicum HOM05D007421 ORTHO05D009203 1.5e-29 134.4 282 37.6
Nitab4.5_0004176g0040 Nicotiana tabacum HOM05D007421 ORTHO05D009203 3.3e-29 133.3 286 34.3
Phvul.002G206600 Phaseolus vulgaris HOM05D007421 ORTHO05D009203 3.3e-29 133.3 318 39.3
QL11p019404 Quercus lobata HOM05D007421 ORTHO05D009203 3.7e-28 129.8 263 41.1
Aqoxy5G02013 Aquilegia oxysepala HOM05D007421 ORTHO05D009203 1.1e-27 128.3 309 33.0
PGSC0003DMG400024171 Solanum tuberosum HOM05D007421 ORTHO05D009203 1.1e-27 128.3 303 36.3
Psat7g097480 Pisum sativum HOM05D007421 ORTHO05D009203 3.1e-27 126.7 347 34.0
Potri.002G084750 Populus trichocarpa HOM05D007421 ORTHO05D009203 5.3e-27 125.9 300 39.7
Prupe.1G559900 Prunus persica HOM05D007421 ORTHO05D009203 1.7e-25 120.9 321 38.9
Glyma.08G075000 Glycine max HOM05D007421 ORTHO05D009203 2.9e-25 120.2 309 33.0
Gohir.D02G194950 Gossypium hirsutum HOM05D007421 ORTHO05D009203 3.8e-25 119.8 347 33.7
Lj9C318G13 Lonicera japonica HOM05D007421 ORTHO05D009203 1.4e-24 117.9 207 40.1
VMungo0251G1640 Vigna mungo HOM05D007421 ORTHO05D009203 1.9e-24 117.5 335 35.2
Oeu000232.1 Olea europaea HOM05D007421 ORTHO05D009203 5.5e-24 115.9 346 35.3
Peaxi162Scf00003g03742 Petunia axillaris HOM05D007421 ORTHO05D009203 4.6e-23 112.8 281 33.5
Sc08g0004770 Simmondsia chinensis HOM05D007421 ORTHO05D009203 7.9e-23 112.1 339 31.3
Medtr4g094292 Medicago truncatula HOM05D007421 ORTHO05D009203 1.0e-22 111.7 373 33.8
FAN18G4438 Fragaria x ananassa HOM05D007421 ORTHO05D009203 5.1e-22 109.4 316 33.5
MD08G1222100 Malus domestica HOM05D007421 ORTHO05D009203 1.1e-21 108.2 238 38.7
Atru.chr6.906 Acer truncatum HOM05D007421 ORTHO05D009203 2.6e-21 107.1 260 34.2
FvH4_5g30620 Fragaria vesca HOM05D007421 ORTHO05D009203 2.6e-21 107.1 322 33.5
DCAR_001801 Daucus carota HOM05D007421 ORTHO05D009203 3.3e-21 106.7 154 51.3
RcHm_v2.0_Chr7g0225501 Rosa chinensis HOM05D007421 ORTHO05D009203 2.2e-20 104.0 313 33.2
Glyma.05G120200 Glycine max HOM05D007421 ORTHO05D009203 1.5e-18 97.8 309 33.3
ECA236G4083 Erigeron canadensis HOM05D007421 ORTHO05D009203 4.5e-18 96.3 291 31.3
MBI07_g32548_MAGBIO Magnolia biondii HOM05D007421 ORTHO05D009203 1.7e-17 94.4 178 41.6
CDE02G3538 Ceratophyllum demersum HOM05D007421 ORTHO05D009203 2.5e-16 90.5 145 40.7
FAN04G0435 Fragaria x ananassa HOM05D007421 ORTHO05D009203 2.5e-16 90.5 316 32.6
Ciclev10003479m.g Citrus clementina HOM05D007421 ORTHO05D009203 3.2e-16 90.1 307 34.2
ATR0753G155 Amborella trichopoda HOM05D007421 ORTHO05D009203 2.1e-15 87.4 123 43.1
Eucgr.I02692 Eucalyptus grandis HOM05D007421 ORTHO05D009203 1.0e-14 85.1 316 31.6
HPP92_013365 Vanilla planifolia HOM05D007421 ORTHO05D009203 5.2e-14 82.8 263 32.7
RcHm_v2.0_Chr7g0236151 Rosa chinensis HOM05D007421 ORTHO05D009203 5.7e-13 79.3 162 35.8
SGA_v2.0_scaffold332G48944 Striga asiatica HOM05D007421 ORTHO05D009203 5.7e-13 79.3 289 32.9
Ah.09g232060 Amaranthus hybridus HOM05D007421 ORTHO05D009203 1.7e-12 77.8 306 28.8
RcHm_v2.0_Chr5g0049711 Rosa chinensis HOM05D007421 ORTHO05D009203 1.4e-11 74.7 173 35.8
CANSAT11G0077 Cannabis sativa HOM05D007421 ORTHO05D009203 5.3e-11 72.8 306 30.1
PGR142G3672 Punica granatum HOM05D007421 ORTHO05D009203 5.3e-11 72.8 246 30.1
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 1.7e-09 67.8 38 71.1
SMO198G0058 Selaginella moellendorffii HOM05D002710 ORTHO05D002905 1.7e-09 67.8 38 71.1
CBR_g30215 Chara braunii HOM05D002710 ORTHO05D009203 2.9e-09 67.0 32 84.4
Migut.B00638 Erythranthe guttata HOM05D007421 ORTHO05D009203 6.5e-09 65.9 205 35.1
Prupe.4G263300 Prunus persica HOM05D007421 ORTHO05D009203 6.5e-09 65.9 94 52.1
SEGI_03000 Sequoiadendron giganteum HOM05D007421 ORTHO05D009203 6.5e-09 65.9 135 37.8
Pp3c2_17030 Physcomitrium patens HOM05D002710 ORTHO05D002905 1.5e-08 64.7 32 75.0
MCO11G228 Micromonas commoda HOM05D002710 ORTHO05D002905 2.5e-08 63.9 32 75.0
Pp3c1_21370 Physcomitrium patens HOM05D002710 ORTHO05D002905 2.5e-08 63.9 59 52.5
arahy.Tifrunner.gnm1.ann1.LE3KL9 Arachis hypogaea HOM05D007421 ORTHO05D009203 5.5e-08 62.8 153 37.3
arahy.Tifrunner.gnm1.ann1.VL1QZD Arachis hypogaea HOM05D007421 ORTHO05D009203 5.5e-08 62.8 153 37.3
Cre03.g172800 Chlamydomonas reinhardtii HOM05D002710 ORTHO05D002905 1.2e-07 61.6 31 77.4
AagrBONN_evm.TU.Sc2ySwM_368.2304 Anthoceros agrestis HOM05D002710 ORTHO05D002905 1.0e-06 58.5 32 65.6
RcHm_v2.0_Chr0c11g0499381 Rosa chinensis HOM05D007421 ORTHO05D009203 1.0e-06 58.5 86 41.9
GSVIVG01022264001 Vitis vinifera HOM05D007421 ORTHO05D009203 1.0e-06 58.5 173 27.2
Hma1.2p1_0012F.1_g007610 Hydrangea macrophylla HOM05D007421 ORTHO05D009203 4.0e-06 56.6 55 50.9
Medtr4g094298 Medicago truncatula HOM05D007421 ORTHO05D009203 4.0e-06 56.6 88 43.2
PRCOL_00004796 Prasinoderma coloniale HOM05D002710 ORTHO05D002905 5.2e-06 56.2 31 74.2
QL01p003296 Quercus lobata HOM05D002710 ORTHO05D002905 6.7e-06 55.8 32 65.6
QL01p003323 Quercus lobata HOM05D002710 ORTHO05D002905 6.7e-06 55.8 32 65.6
QL01p003332 Quercus lobata HOM05D002710 ORTHO05D002905 6.7e-06 55.8 32 65.6
MD16G1035800 Malus domestica HOM05D002710 ORTHO05D002905 8.8e-06 55.5 32 65.6


User provided reference genes

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