Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 3.6e-233 811.2 412 100.0
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 6.7e-147 524.6 416 63.7
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 4.8e-145 518.5 400 66.8
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 1.4e-144 516.9 412 65.5
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 1.8e-144 516.5 412 65.5
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 3.5e-143 512.3 421 64.8
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 1.7e-142 510.0 410 65.4
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 5.0e-142 508.4 394 67.0
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 2.1e-140 503.1 412 64.8
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 2.7e-140 502.7 418 64.8
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 1.8e-139 500.0 393 65.4
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 4.4e-138 495.4 396 66.9
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 6.3e-137 491.5 403 64.5
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 1.6e-135 486.9 380 67.4
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 3.5e-135 485.7 421 62.0
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 4.5e-135 485.3 409 62.1
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 7.2e-133 478.0 422 62.3
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 2.6e-130 469.5 402 61.9
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 3.4e-130 469.2 406 60.8
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 9.8e-130 467.6 388 62.9
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 7.7e-127 458.0 401 61.3
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 3.8e-126 455.7 385 60.3
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 8.5e-126 454.5 407 60.0
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 5.5e-125 451.8 407 60.7
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 1.2e-124 450.7 408 58.6
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 2.1e-124 449.9 409 57.9
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 8.0e-124 448.0 409 58.2
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 5.2e-123 445.3 419 59.7
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 1.5e-122 443.7 392 58.9
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 9.8e-122 441.0 407 59.2
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 3.7e-121 439.1 415 58.6
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 6.3e-121 438.3 387 58.1
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 8.3e-121 438.0 398 58.0
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 4.1e-120 435.6 407 57.7
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 4.1e-120 435.6 387 57.6
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 7.0e-120 434.9 407 56.8
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 2.0e-119 433.3 389 59.6
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 7.7e-119 431.4 398 55.8
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 7.7e-119 431.4 414 57.0
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 1.5e-117 427.2 379 57.8
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 1.6e-116 423.7 397 55.4
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 2.8e-116 422.9 391 59.6
Haze_23912 Corylus avellana HOM05D005177 ORTHO05D006175 4.7e-116 422.2 394 59.1
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 1.4e-115 420.6 411 55.0
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 1.8e-115 420.2 388 58.2
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 3.0e-115 419.5 393 58.5
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 7.5e-114 414.8 366 59.0
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 1.3e-113 414.1 406 54.7
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.7e-113 413.7 351 62.4
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 1.7e-113 413.7 410 53.4
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 2.2e-113 413.3 363 62.5
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 2.2e-113 413.3 403 54.3
CiPaw.13G107200 Carya illinoinensis HOM05D005177 ORTHO05D006175 3.7e-113 412.5 419 56.3
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 6.4e-113 411.8 398 56.3
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 6.4e-113 411.8 432 52.5
CAN.G553.3 Capsicum annuum HOM05D005177 ORTHO05D006175 2.4e-112 409.8 303 66.0
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 4.1e-112 409.1 402 55.2
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 1.3e-110 404.1 386 58.5
Lalb_Chr01g0004161 Lupinus albus HOM05D005177 ORTHO05D006175 2.3e-110 403.3 386 56.5
Sc06g0010530 Simmondsia chinensis HOM05D005177 ORTHO05D006175 3.0e-110 402.9 366 60.1
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 2.1e-108 396.7 419 52.3
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 4.7e-108 395.6 411 53.8
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 6.2e-108 395.2 424 50.2
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 3.1e-107 392.9 349 62.2
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 4.0e-107 392.5 426 49.5
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 6.8e-107 391.7 435 50.3
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 8.9e-107 391.3 416 51.7
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 1.5e-106 390.6 379 55.9
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 1.5e-106 390.6 393 56.5
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 2.0e-106 390.2 430 50.2
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 5.8e-106 388.7 394 54.1
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 1.3e-105 387.5 433 50.8
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 1.3e-105 387.5 393 52.9
Thhalv10013696m.g Eutrema salsugineum HOM05D005177 ORTHO05D006175 1.3e-105 387.5 430 51.2
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 2.9e-105 386.3 411 51.8
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 3.7e-105 386.0 401 52.6
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 6.4e-105 385.2 394 52.8
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 7.0e-104 381.7 305 67.5
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 7.0e-104 381.7 477 49.1
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 6.0e-103 378.6 438 49.3
CsaV3_6G021650 Cucumis sativus L. HOM05D005177 ORTHO05D006175 1.3e-102 377.5 385 54.0
CiPaw.13G107600 Carya illinoinensis HOM05D005177 ORTHO05D006175 5.0e-102 375.6 280 66.4
SHI06048 Sapria himalayana HOM05D005177 ORTHO05D006175 5.6e-101 372.1 380 53.4
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 2.8e-100 369.8 387 54.8
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 6.2e-100 368.6 417 49.2
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 8.1e-100 368.2 331 61.6
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 2.6e-98 363.2 398 49.7
QL01p037240 Quercus lobata HOM05D005177 ORTHO05D006175 9.8e-98 361.3 282 64.2
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.1e-96 357.8 382 52.6
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 1.9e-96 357.1 253 69.6
Os05g0123300 Oryza sativa ssp. japonica HOM05D005177 ORTHO05D006175 2.4e-96 356.7 379 48.8
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 1.6e-95 354.0 424 47.4
ECA238G1817 Erigeron canadensis HOM05D000382 ORTHO05D000391 6.0e-95 352.1 399 48.4
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 2.5e-93 346.7 377 53.1
ATR1159G017 Amborella trichopoda HOM05D005177 ORTHO05D006175 3.1e-91 339.7 404 47.0
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 3.1e-91 339.7 367 51.0
Phvul.007G036300 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 4.4e-90 335.9 377 47.2
CSS0008980 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D006175 7.6e-90 335.1 231 67.5
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 1.7e-89 334.0 392 45.4
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 4.1e-88 329.3 411 46.5
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 7.1e-88 328.6 392 50.3
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 7.1e-88 328.6 411 48.2
VMungo0251G1016 Vigna mungo HOM05D005177 ORTHO05D006175 1.2e-87 327.8 404 44.8
C02p11760 Brassica napus HOM05D005177 ORTHO05D006175 3.6e-84 316.2 276 55.8
Lj5g0027081 Lotus japonicus HOM05D005177 ORTHO05D006175 6.8e-83 312.0 297 51.9
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 3.8e-81 306.2 397 43.8
CDE04G2914 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 4.9e-81 305.8 365 45.2
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 1.1e-80 304.7 412 43.2
PSO384G3506 Papaver somniferum HOM05D005177 ORTHO05D006175 2.5e-77 293.5 276 52.9
PSO339G4079 Papaver somniferum HOM05D005177 ORTHO05D006175 3.6e-76 289.7 295 49.5
SMO143G0224 Selaginella moellendorffii HOM05D005177 ORTHO05D006175 4.8e-76 289.3 370 43.8
Pp3c24_6040 Physcomitrium patens HOM05D005177 ORTHO05D006175 6.9e-75 285.4 299 47.2
Mapoly0004s0234 Marchantia polymorpha HOM05D005177 ORTHO05D006175 5.8e-74 282.3 349 45.0
CARHR274040 Cardamine hirsuta HOM05D005177 ORTHO05D006175 9.3e-72 275.0 324 49.4
Lj2C1035T4 Lonicera japonica HOM05D005177 ORTHO05D006175 1.3e-70 271.2 190 66.8
Ca_19242_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 4.0e-67 259.6 194 61.9
Lalb_Chr06g0165641 Lupinus albus HOM05D005177 ORTHO05D006175 9.0e-67 258.5 376 41.0
CBR_g2921 Chara braunii HOM05D005177 ORTHO05D006175 3.0e-62 243.4 283 43.5
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 5.1e-62 242.7 240 57.1
MD11G1130000 Malus domestica HOM05D005177 ORTHO05D006175 3.3e-61 240.0 178 64.6
AUR62025012 Chenopodium quinoa HOM05D005177 ORTHO05D006175 2.9e-57 226.9 179 57.5
HPP92_013896 Vanilla planifolia HOM05D005177 ORTHO05D006175 1.6e-47 194.5 222 51.8
CDE07G1541 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 8.7e-46 188.7 219 50.7
Lalb_Chr03g0027121 Lupinus albus HOM05D005177 ORTHO05D006175 4.8e-44 183.0 153 56.9
Glyma.20G125100 Glycine max HOM05D005177 ORTHO05D006175 1.2e-42 178.3 204 49.5
MD12G1113200 Malus domestica HOM05D005177 ORTHO05D006175 7.7e-34 149.1 102 62.7
MD03G1203800 Malus domestica HOM05D005177 ORTHO05D006175 2.9e-33 147.1 102 61.8
MD02G1279000 Malus domestica HOM05D005177 ORTHO05D006175 1.4e-32 144.8 102 62.7
Aqoxy230s004 Aquilegia oxysepala HOM05D000156 ORTHO05D002600 9.4e-32 142.1 113 61.9
SalBow7G3352 Salvia bowleyana HOM05D005177 ORTHO05D006175 9.1e-27 125.6 135 46.7
AUR62033196 Chenopodium quinoa HOM05D005177 ORTHO05D006175 2.0e-26 124.4 101 57.4
Lj2A1035T47 Lonicera japonica HOM05D005177 ORTHO05D006175 2.2e-25 120.9 174 50.6
AUR62037383 Chenopodium quinoa HOM05D005177 ORTHO05D006175 8.5e-25 119.0 101 53.5
CDE07G0204 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 1.9e-24 117.9 88 61.4
SalBow2G1018 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.6e-23 114.8 126 46.0
SalBow8G4533 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.6e-23 114.8 107 52.3
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 3.0e-22 110.5 103 58.3
SEGI_18444 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 1.7e-17 94.7 77 59.7
SEGI_09926 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 5.5e-16 89.7 86 40.7
QL01p037253 Quercus lobata HOM05D005177 ORTHO05D033885 1.0e-14 85.5 116 53.4
CSS0040502 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 5.7e-13 79.7 131 49.6
CSS0013492 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 3.5e-10 70.5 132 44.7
MD02G1245500 Malus domestica HOM05D005177 ORTHO05D006175 2.5e-08 64.3 42 73.8


User provided reference genes

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