Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G139900 Manihot esculenta HOM05D006507 ORTHO05D007296 0.0e+00 2907.5 1505 100.0
Potri.005G131500 Populus trichocarpa HOM05D006507 ORTHO05D007296 1.4e-197 694.9 1524 38.5
Sabra05G0106900 Salix brachista HOM05D006507 ORTHO05D007296 3.3e-175 620.5 1525 36.8
Haze_23947 Corylus avellana HOM05D006507 ORTHO05D007296 6.2e-158 563.1 1661 34.2
Atru.chr3.3727 Acer truncatum HOM05D006507 ORTHO05D007296 8.4e-155 552.7 1659 32.9
QL01p036413 Quercus lobata HOM05D006507 ORTHO05D007296 1.6e-142 511.9 1875 30.7
CiPaw.13G105600 Carya illinoinensis HOM05D006507 ORTHO05D007296 5.9e-140 503.4 1601 32.5
Thecc.09G262500 Theobroma cacao HOM05D006507 ORTHO05D007296 2.1e-137 495.0 1582 32.2
Cfa011382 Carpinus fangiana HOM05D006507 ORTHO05D007296 6.1e-137 493.4 1605 32.8
Atru.chr3.3722 Acer truncatum HOM05D006507 ORTHO05D007296 8.2e-134 483.0 1566 32.0
COL.COLO4_25271 Corchorus olitorius HOM05D006507 ORTHO05D007296 2.7e-129 468.0 1580 32.5
Duzib170G0831 Durio zibethinus HOM05D006507 ORTHO05D007296 3.1e-125 454.5 1565 31.5
Gorai.001G129300 Gossypium raimondii HOM05D006507 ORTHO05D007296 2.0e-111 408.7 1575 31.1
Gohir.D07G120101 Gossypium hirsutum HOM05D006507 ORTHO05D007296 2.4e-109 401.7 1566 30.8
TWI79G0725 Tripterygium wilfordii HOM05D006507 ORTHO05D007296 4.1e-109 401.0 1576 28.9
Prupe.6G092200 Prunus persica HOM05D006507 ORTHO05D007296 9.8e-103 379.8 1808 27.9
FAN11G1966 Fragaria x ananassa HOM05D006507 ORTHO05D007296 1.0e-99 369.8 1594 29.4
Gohir.A07G115600 Gossypium hirsutum HOM05D006507 ORTHO05D007296 9.5e-98 363.2 1461 30.5
TAR633G2802 Trochodendron aralioides HOM05D006507 ORTHO05D007296 4.9e-86 324.3 1557 27.9
CANSAT54G2524 Cannabis sativa HOM05D006507 ORTHO05D007296 1.6e-84 319.3 1611 28.7
CSS0009997 Camellia sinensis var. sinensis HOM05D006507 ORTHO05D007296 1.3e-83 316.2 1529 28.8
FAN16G3496 Fragaria x ananassa HOM05D006507 ORTHO05D007296 1.5e-82 312.8 1600 27.4
PGR102G3212 Punica granatum HOM05D006507 ORTHO05D007296 9.5e-82 310.1 1529 29.4
FvH4_3g33790 Fragaria vesca HOM05D006507 ORTHO05D007296 1.1e-74 286.6 1542 27.5
ClCG02G020740 Citrullus lanatus HOM05D006507 ORTHO05D007296 2.6e-71 275.4 1581 26.8
Glyma.11G150661 Glycine max HOM05D006507 ORTHO05D007296 2.6e-71 275.4 1771 25.1
Glyma.12G072900 Glycine max HOM05D006507 ORTHO05D007296 4.1e-69 268.1 1788 26.5
Actinidia24071 Actinidia chinensis HOM05D006507 ORTHO05D007296 7.1e-69 267.3 1163 29.7
Lj2A1039T65 Lonicera japonica HOM05D006507 ORTHO05D007296 5.2e-64 251.1 623 36.9
TPR.G2995 Trifolium pratense HOM05D006507 ORTHO05D007296 5.8e-63 247.7 1632 26.0
AL8G36760 Arabidopsis lyrata HOM05D006507 ORTHO05D007296 4.6e-60 238.0 1527 25.0
Rhsim13G0091300 Rhododendron simsii HOM05D006507 ORTHO05D007296 1.7e-59 236.1 1568 26.0
Sp6g21800 Schrenkiella parvula HOM05D006507 ORTHO05D007296 1.1e-58 233.4 1503 25.7
MELO3C025723.2 Cucumis melo HOM05D006507 ORTHO05D007296 4.8e-57 228.0 1597 25.7
THA.LOC104810833 Tarenaya hassleriana HOM05D006507 ORTHO05D007296 1.1e-56 226.9 1543 25.6
Medtr4g061110 Medicago truncatula HOM05D006507 ORTHO05D007296 3.1e-56 225.3 1637 24.8
GSVIVG01025113001 Vitis vinifera HOM05D038408 ORTHO05D007296 1.5e-55 223.0 1518 25.3
Lj3g0018374 Lotus japonicus HOM05D006507 ORTHO05D007296 5.8e-55 221.1 1667 26.1
arahy.Tifrunner.gnm1.ann1.NP2AMW Arachis hypogaea HOM05D006507 ORTHO05D007296 7.1e-53 214.2 1571 26.5
Ca_19235_v3 Cicer arietinum L. HOM05D006507 ORTHO05D007296 6.0e-52 211.1 1543 25.5
RcHm_v2.0_Chr5g0061361 Rosa chinensis HOM05D006507 ORTHO05D007296 2.3e-51 209.1 985 27.9
Nn2g12985 Nelumbo nucifera HOM05D006507 ORTHO05D007296 3.0e-51 208.8 712 31.0
Carub.0008s2088 Capsella rubella HOM05D006507 ORTHO05D007296 5.1e-51 208.0 1521 25.0
Sc21g0000130 Simmondsia chinensis HOM05D006507 ORTHO05D007296 8.7e-51 207.2 1549 25.3
A10p17300 Brassica napus HOM05D006507 ORTHO05D007296 1.1e-50 206.8 1525 24.1
CsaV3_6G021880 Cucumis sativus L. HOM05D006507 ORTHO05D007296 1.5e-50 206.5 1559 24.7
CARHR273800 Cardamine hirsuta HOM05D006507 ORTHO05D007296 4.3e-50 204.9 1542 25.0
Nitab4.5_0000270g0010 Nicotiana tabacum HOM05D006507 ORTHO05D007296 5.6e-50 204.5 1544 25.5
FAN21G2403 Fragaria x ananassa HOM05D006507 ORTHO05D007296 5.3e-48 198.0 770 31.3
MD03G1109500 Malus domestica HOM05D006507 ORTHO05D007296 5.3e-48 198.0 918 28.4
Sed0026220 Sechium edule HOM05D006507 ORTHO05D007296 5.3e-48 198.0 1541 25.1
AT5G60150 Arabidopsis thaliana HOM05D006507 ORTHO05D007296 2.6e-47 195.7 1560 25.8
RcHm_v2.0_Chr5g0061351 Rosa chinensis HOM05D006507 ORTHO05D007296 5.8e-47 194.5 253 54.9
Ciclev10027733m.g Citrus clementina HOM05D006507 ORTHO05D007296 4.2e-45 188.3 959 26.7
arahy.Tifrunner.gnm1.ann1.M2HQ4Q Arachis hypogaea HOM05D006507 ORTHO05D007296 1.6e-44 186.4 1575 25.6
Thhalv10012478m.g Eutrema salsugineum HOM05D006507 ORTHO05D007296 4.6e-44 184.9 1537 23.9
CANSAT54G0008 Cannabis sativa HOM05D006507 ORTHO05D007296 1.5e-42 179.9 1354 27.2
BolC9t58131H Brassica oleracea HOM05D006507 ORTHO05D007296 6.2e-41 174.5 1537 23.9
Cpa.g.sc139.58 Carica papaya HOM05D006507 ORTHO05D007296 6.2e-41 174.5 226 53.1
Oeu022272.1 Olea europaea HOM05D006507 ORTHO05D007296 1.5e-39 169.9 577 32.2
C09p52640 Brassica napus HOM05D006507 ORTHO05D007296 2.0e-39 169.5 1532 24.1
Nitab4.5_0001698g0050 Nicotiana tabacum HOM05D006507 ORTHO05D007296 2.0e-39 169.5 549 33.0
Sopen06g031820 Solanum pennellii HOM05D006507 ORTHO05D007296 1.7e-38 166.4 1436 24.5
VMungo1127G1622 Vigna mungo HOM05D006507 ORTHO05D007296 1.7e-38 166.4 589 30.9
BraA10t43814Z Brassica rapa HOM05D006507 ORTHO05D007296 2.2e-38 166.0 1530 23.0
MSTRG.12615 Avicennia marina HOM05D006507 ORTHO05D007296 3.2e-37 162.2 521 32.8
DCAR_006032 Daucus carota HOM05D006507 ORTHO05D007296 9.3e-37 160.6 555 32.1
Aa31LG1G12330 Aethionema arabicum HOM05D006507 ORTHO05D007296 4.3e-34 151.8 570 32.1
PGSC0003DMG400007499 Solanum tuberosum HOM05D006507 ORTHO05D007296 8.2e-33 147.5 1539 24.8
vmacro03160 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 1.1e-29 137.1 366 36.9
Cpa.g.sc139.57 Carica papaya HOM05D006507 ORTHO05D007296 1.4e-29 136.7 561 26.7
PSO384G3963 Papaver somniferum HOM05D006507 ORTHO05D007296 1.4e-29 136.7 1628 23.7
Lsat_1_v5_gn_2_25380 Lactuca sativa HOM05D006507 ORTHO05D007296 4.2e-29 135.2 645 29.1
Dinv32808 Davidia involucrata HOM05D006507 ORTHO05D007296 7.1e-29 134.4 97 70.1
Aqoxy2G01879 Aquilegia oxysepala HOM05D006507 ORTHO05D007296 6.1e-28 131.3 102 65.7
Lalb_Chr19g0137491 Lupinus albus HOM05D006507 ORTHO05D007296 1.3e-27 130.2 251 42.2
vmacro03159 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 5.1e-27 128.3 131 52.7
SGA_v2.0_scaffold80G25739 Striga asiatica HOM05D006507 ORTHO05D007296 6.7e-27 127.9 477 32.7
ATR1159G075 Amborella trichopoda HOM05D006507 ORTHO05D007296 8.7e-27 127.5 577 29.8
ECA238G2561 Erigeron canadensis HOM05D006507 ORTHO05D007296 3.3e-26 125.6 1688 23.2
HanXRQChr06g0183281 Helianthus annuus HOM05D006507 ORTHO05D007296 1.3e-25 123.6 90 71.1
Migut.N02633 Erythranthe guttata HOM05D006507 ORTHO05D007296 4.8e-25 121.7 79 74.7
Hma1.2p1_2156F.1_g315450 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 1.1e-24 120.6 81 75.3
Cc01_g11720 Coffea canephora HOM05D006507 ORTHO05D007296 1.4e-24 120.2 88 64.8
Solyc06g075420.1 Solanum lycopersicum HOM05D006507 ORTHO05D007296 1.4e-24 120.2 172 44.2
PSO339G6510 Papaver somniferum HOM05D006507 ORTHO05D007296 1.8e-24 119.8 1549 23.1
Actinidia08403 Actinidia chinensis HOM05D006507 ORTHO05D007296 2.0e-23 116.3 69 79.7
CAN.G1001.3 Capsicum annuum HOM05D006507 ORTHO05D007296 2.0e-23 116.3 254 39.4
SalBow3G2105 Salvia bowleyana HOM05D006507 ORTHO05D007296 2.0e-23 116.3 78 70.5
CAN.G1001.2 Capsicum annuum HOM05D006507 ORTHO05D007296 4.5e-23 115.2 339 31.6
HanXRQChr06g0183291 Helianthus annuus HOM05D006507 ORTHO05D007296 5.9e-23 114.8 206 41.3
Psat7g223080 Pisum sativum HOM05D006507 ORTHO05D007296 5.0e-22 111.7 139 45.3
MD03G1109700 Malus domestica HOM05D006507 ORTHO05D007296 2.5e-21 109.4 141 48.2
Lalb_Chr19g0137501 Lupinus albus HOM05D006507 ORTHO05D007296 6.1e-20 104.8 1304 22.2
Actinidia07103 Actinidia chinensis HOM05D006507 ORTHO05D007296 1.4e-19 103.6 340 29.1
Migut.N02632 Erythranthe guttata HOM05D006507 ORTHO05D007296 5.1e-19 101.7 182 42.9
Solyc06g075410.4 Solanum lycopersicum HOM05D006507 ORTHO05D007296 5.1e-19 101.7 211 40.3
HPP92_026984 Vanilla planifolia HOM05D006507 ORTHO05D007296 6.7e-19 101.3 133 44.4
AUR62006495 Chenopodium quinoa HOM05D006507 ORTHO05D007296 8.8e-19 100.9 101 52.5
HPP92_015411 Vanilla planifolia HOM05D006507 ORTHO05D007296 2.0e-18 99.8 131 45.0
SEGI_16529 Sequoiadendron giganteum HOM05D006507 ORTHO05D007296 4.3e-18 98.6 68 64.7
AUR62025040 Chenopodium quinoa HOM05D006507 ORTHO05D007296 5.7e-18 98.2 150 41.3
EL10Ac9g22402 Beta vulgaris HOM05D006507 ORTHO05D007296 1.7e-17 96.7 452 31.2
Os12g0102700 Oryza sativa ssp. japonica HOM05D006507 ORTHO05D007296 1.4e-16 93.6 152 42.1
Sopen02g037950 Solanum pennellii HOM05D000002 ORTHO05D000001 4.1e-16 92.0 189 39.7
Psat7g223120 Pisum sativum HOM05D006507 ORTHO05D007296 2.0e-15 89.7 254 35.8
Sc24g0004230 Simmondsia chinensis HOM05D009348 ORTHO05D010856 2.2e-14 86.3 129 42.6
Hma1.2p1_0840F.1_g226520 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 3.8e-14 85.5 73 56.2
CDE04G2211 Ceratophyllum demersum HOM05D034970 ORTHO05D007296 8.5e-14 84.3 491 27.5
AagrBONN_evm.TU.Sc2ySwM_368.2680 Anthoceros agrestis HOM05D006507 ORTHO05D007296 3.0e-11 75.9 172 34.9
FvH4_6g15330 Fragaria vesca HOM05D003265 ORTHO05D003819 1.5e-10 73.6 439 27.1
Peaxi162Scf00072g00227 Petunia axillaris HOM05D006507 ORTHO05D007296 9.7e-10 70.9 119 42.9
CDE12G0493 Ceratophyllum demersum HOM05D034970 ORTHO05D007296 1.7e-09 70.1 616 26.3
CsaV3_3G035550 Cucumis sativus L. HOM05D003265 ORTHO05D003819 2.8e-09 69.3 590 25.8
Sopen02g037960 Solanum pennellii HOM05D006507 ORTHO05D007296 2.8e-09 69.3 111 43.2
Hma1.2p1_0660F.1_g197490 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 3.7e-09 68.9 67 53.7
Duzib128G1251 Durio zibethinus HOM05D003265 ORTHO05D003819 4.8e-09 68.6 647 24.4
Prupe.6G241300 Prunus persica HOM05D003265 ORTHO05D003819 1.4e-08 67.0 216 34.3
Thecc.05G053900 Theobroma cacao HOM05D003265 ORTHO05D003819 1.8e-08 66.6 642 24.6
MD04G1104400 Malus domestica HOM05D003265 ORTHO05D003819 2.4e-08 66.2 530 24.7
Mapoly0001s0188 Marchantia polymorpha HOM05D006507 ORTHO05D007296 2.4e-08 66.2 64 56.2
TWI74G1096 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 3.1e-08 65.9 539 24.9
Atru.chr8.2556 Acer truncatum HOM05D003265 ORTHO05D003819 4.1e-08 65.5 621 22.9
Lsat_1_v5_gn_1_53881 Lactuca sativa HOM05D003265 ORTHO05D003819 4.1e-08 65.5 392 27.0
CSS0020316 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 5.3e-08 65.1 470 25.7
Pp3c16_7200 Physcomitrium patens HOM05D034648 ORTHO05D007296 9.1e-08 64.3 235 28.9
Nn2g12994 Nelumbo nucifera HOM05D003265 ORTHO05D003819 2.6e-07 62.8 436 27.1
Rhsim04G0151400 Rhododendron simsii HOM05D003265 ORTHO05D003819 2.6e-07 62.8 446 24.7
Migut.L01659 Erythranthe guttata HOM05D003265 ORTHO05D003819 4.5e-07 62.0 509 25.0
Gorai.002G250300 Gossypium raimondii HOM05D003265 ORTHO05D003819 4.5e-07 62.0 547 25.4
Medtr7g100700 Medicago truncatula HOM05D003265 ORTHO05D003819 4.5e-07 62.0 434 27.2
RhsimUnG0118100 Rhododendron simsii HOM05D003265 ORTHO05D003819 5.9e-07 61.6 758 23.0
Dinv37252 Davidia involucrata HOM05D003265 ORTHO05D003819 1.0e-06 60.8 486 25.3
Sabra06G0103300 Salix brachista HOM05D003265 ORTHO05D003819 1.3e-06 60.5 140 35.7
Os11g0103100 Oryza sativa ssp. japonica HOM05D006507 ORTHO05D007296 1.7e-06 60.1 241 30.3
TWI77G0315 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 2.2e-06 59.7 222 30.6
CiPaw.10G137500 Carya illinoinensis HOM05D003265 ORTHO05D003819 3.8e-06 58.9 541 24.8
MD12G1124300 Malus domestica HOM05D003265 ORTHO05D003819 5.0e-06 58.5 491 26.5
unitig_746.g26760 Utricularia gibba HOM05D003265 ORTHO05D003819 6.5e-06 58.2 104 36.5
MELO3C009314.2 Cucumis melo HOM05D003265 ORTHO05D003819 8.5e-06 57.8 586 24.1
GSVIVG01032692001 Vitis vinifera HOM05D038408 ORTHO05D007296 8.5e-06 57.8 313 24.3


User provided reference genes

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