Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G136100 Manihot esculenta HOM05D006681 ORTHO05D008338 6.2e-157 557.4 272 100.0
Potri.009G026700 Populus trichocarpa HOM05D006681 ORTHO05D008338 2.5e-113 412.5 292 71.9
QL01p034239 Quercus lobata HOM05D006681 ORTHO05D008338 4.2e-113 411.8 288 71.5
Atru.chr3.3798 Acer truncatum HOM05D006681 ORTHO05D008338 5.5e-113 411.4 290 70.3
Sabra09G0017800 Salix brachista HOM05D006681 ORTHO05D008338 3.5e-112 408.7 292 71.6
Ciclev10028948m.g Citrus clementina HOM05D006681 ORTHO05D008338 1.3e-111 406.8 288 71.5
CSS0007914 Camellia sinensis var. sinensis HOM05D006681 ORTHO05D008338 2.3e-111 406.0 287 70.7
Gorai.009G102400 Gossypium raimondii HOM05D006681 ORTHO05D008338 2.3e-111 406.0 290 69.7
Thecc.09G329700 Theobroma cacao HOM05D006681 ORTHO05D008338 3.0e-111 405.6 288 70.5
Cfa011429 Carpinus fangiana HOM05D006681 ORTHO05D008338 3.9e-111 405.2 289 72.0
Gohir.D05G098750 Gossypium hirsutum HOM05D006681 ORTHO05D008338 8.7e-111 404.1 290 69.3
Gohir.A05G098700 Gossypium hirsutum HOM05D006681 ORTHO05D008338 1.9e-110 402.9 290 69.3
CSS0025304 Camellia sinensis var. sinensis HOM05D006681 ORTHO05D008338 3.3e-110 402.1 287 70.4
GSVIVG01025054001 Vitis vinifera HOM05D006681 ORTHO05D008338 9.7e-110 400.6 288 69.1
COL.COLO4_18427 Corchorus olitorius HOM05D006681 ORTHO05D008338 2.2e-109 399.4 290 69.0
FvH4_3g34680 Fragaria vesca HOM05D006681 ORTHO05D008338 6.3e-109 397.9 287 69.7
FAN11G3596 Fragaria x ananassa HOM05D006681 ORTHO05D008338 6.3e-109 397.9 287 69.7
CiPaw.13G101600 Carya illinoinensis HOM05D006681 ORTHO05D008338 1.4e-108 396.7 289 70.9
CANSAT54G2145 Cannabis sativa HOM05D006681 ORTHO05D008338 2.0e-107 392.9 286 67.5
FAN16G0358 Fragaria x ananassa HOM05D006681 ORTHO05D008338 2.0e-107 392.9 287 68.6
arahy.Tifrunner.gnm1.ann1.SK7GFS Arachis hypogaea HOM05D006681 ORTHO05D008338 2.6e-107 392.5 290 67.6
Duzib170G0311 Durio zibethinus HOM05D006681 ORTHO05D008338 3.4e-107 392.1 287 67.9
arahy.Tifrunner.gnm1.ann1.FZI6FG Arachis hypogaea HOM05D006681 ORTHO05D008338 7.7e-107 391.0 291 67.4
TAR633G1649 Trochodendron aralioides HOM05D006681 ORTHO05D008338 1.3e-106 390.2 287 68.3
MD11G1116600 Malus domestica HOM05D006681 ORTHO05D008338 5.0e-106 388.3 288 67.4
Ca_19209_v3 Cicer arietinum L. HOM05D006681 ORTHO05D008338 6.5e-106 387.9 291 67.7
RcHm_v2.0_Chr5g0062361 Rosa chinensis HOM05D006681 ORTHO05D008338 1.4e-105 386.7 286 68.2
TWI31G0387 Tripterygium wilfordii HOM05D006681 ORTHO05D008338 1.9e-105 386.3 287 70.0
Prupe.6G086900 Prunus persica HOM05D006681 ORTHO05D008338 2.7e-104 382.5 288 66.7
FAN21G0481 Fragaria x ananassa HOM05D006681 ORTHO05D008338 4.6e-104 381.7 316 62.7
Oeu040277.1 Olea europaea HOM05D006681 ORTHO05D008338 6.1e-104 381.3 284 68.3
Cc01_g12140 Coffea canephora HOM05D006681 ORTHO05D008338 1.0e-103 380.6 292 64.7
Lj3g0002575 Lotus japonicus HOM05D006681 ORTHO05D008338 1.8e-103 379.8 289 67.5
Migut.D02146 Erythranthe guttata HOM05D006681 ORTHO05D008338 2.3e-103 379.4 289 65.7
Nn2g10531 Nelumbo nucifera HOM05D006681 ORTHO05D008338 3.0e-103 379.0 287 66.6
DCAR_006014 Daucus carota HOM05D006681 ORTHO05D008338 5.1e-103 378.3 287 65.5
TPR.G3006 Trifolium pratense HOM05D006681 ORTHO05D008338 5.1e-103 378.3 291 66.3
ECA236G1321 Erigeron canadensis HOM05D006681 ORTHO05D008338 6.7e-103 377.9 283 67.8
Lalb_Chr03g0026931 Lupinus albus HOM05D006681 ORTHO05D008338 1.5e-102 376.7 290 63.8
Medtr4g062130 Medicago truncatula HOM05D006681 ORTHO05D008338 2.5e-102 375.9 291 66.3
CAN.G1647.1 Capsicum annuum HOM05D006681 ORTHO05D008338 4.3e-102 375.2 283 66.1
Sopen11g030630 Solanum pennellii HOM05D006681 ORTHO05D008338 9.7e-102 374.0 288 64.6
PGSC0003DMG400015551 Solanum tuberosum HOM05D006681 ORTHO05D008338 1.7e-101 373.2 283 66.4
MSTRG.18607 Avicennia marina HOM05D006681 ORTHO05D008338 3.7e-101 372.1 289 64.4
Eucgr.J02098 Eucalyptus grandis HOM05D006681 ORTHO05D008338 3.7e-101 372.1 288 65.3
Solyc11g072970.2 Solanum lycopersicum HOM05D006681 ORTHO05D008338 3.7e-101 372.1 288 64.6
EL10Ac7g15941 Beta vulgaris HOM05D006681 ORTHO05D008338 6.3e-101 371.3 284 64.8
THA.LOC104814870 Tarenaya hassleriana HOM05D006681 ORTHO05D008338 8.2e-101 370.9 283 67.1
Peaxi162Scf00411g00068 Petunia axillaris HOM05D006681 ORTHO05D008338 3.1e-100 369.0 289 64.7
PGR119G1802 Punica granatum HOM05D006681 ORTHO05D008338 3.1e-100 369.0 309 64.1
CsaV3_6G022080 Cucumis sativus L. HOM05D006681 ORTHO05D008338 5.3e-100 368.2 290 63.4
Psat7g220640 Pisum sativum HOM05D006681 ORTHO05D008338 2.6e-99 365.9 291 64.9
Lsat_1_v5_gn_8_78740 Lactuca sativa HOM05D006681 ORTHO05D008338 4.5e-99 365.2 280 65.7
Sed0010670 Sechium edule HOM05D006681 ORTHO05D008338 7.7e-99 364.4 288 64.9
HanXRQChr05g0134071 Helianthus annuus HOM05D006681 ORTHO05D008338 1.3e-98 363.6 285 66.7
Phvul.011G069100 Phaseolus vulgaris HOM05D006681 ORTHO05D008338 3.8e-98 362.1 292 63.4
BraA06t25188Z Brassica rapa HOM05D006681 ORTHO05D008338 6.5e-98 361.3 289 61.9
Rhsim13G0088300 Rhododendron simsii HOM05D006681 ORTHO05D008338 8.5e-98 360.9 291 66.7
A06p21000 Brassica napus HOM05D006681 ORTHO05D008338 1.1e-97 360.5 289 61.9
C03p70520 Brassica napus HOM05D006681 ORTHO05D008338 2.5e-97 359.4 289 61.6
BolC3t19336H Brassica oleracea HOM05D006681 ORTHO05D008338 2.5e-97 359.4 289 61.6
FAN25G3219 Fragaria x ananassa HOM05D006681 ORTHO05D008338 2.5e-97 359.4 268 67.9
SalBow3G4078 Salvia bowleyana HOM05D006681 ORTHO05D008338 2.5e-97 359.4 289 63.3
Thhalv10002615m.g Eutrema salsugineum HOM05D006681 ORTHO05D008338 3.2e-97 359.0 293 62.5
BcaC01g01926 Brassica carinata HOM05D006681 ORTHO05D008338 9.4e-97 357.5 289 60.9
Aqoxy4G03072 Aquilegia oxysepala HOM05D006681 ORTHO05D008338 1.2e-96 357.1 284 63.0
Sp5g15430 Schrenkiella parvula HOM05D006681 ORTHO05D008338 2.7e-96 355.9 289 61.9
AT3G46200 Arabidopsis thaliana HOM05D006681 ORTHO05D008338 4.7e-96 355.1 293 62.1
MBI14_g35939_MAGBIO Magnolia biondii HOM05D006681 ORTHO05D008338 6.1e-96 354.8 287 63.1
VMungo1127G1059 Vigna mungo HOM05D006681 ORTHO05D008338 6.1e-96 354.8 310 60.3
PSO339G5789 Papaver somniferum HOM05D006681 ORTHO05D008338 1.0e-95 354.0 287 64.5
Nitab4.5_0002684g0160 Nicotiana tabacum HOM05D006681 ORTHO05D008338 1.8e-95 353.2 294 61.9
AL5G24960 Arabidopsis lyrata HOM05D006681 ORTHO05D008338 6.7e-95 351.3 288 61.8
ClCG02G020630 Citrullus lanatus HOM05D006681 ORTHO05D008338 6.7e-95 351.3 337 56.7
Os05g0117500 Oryza sativa ssp. japonica HOM05D006681 ORTHO05D008338 8.8e-95 350.9 289 60.9
PSO384G0101 Papaver somniferum HOM05D006681 ORTHO05D008338 8.8e-95 350.9 287 64.1
Carub.0005s1203 Capsella rubella HOM05D006681 ORTHO05D008338 1.7e-93 346.7 293 59.7
AUR62001852 Chenopodium quinoa HOM05D006681 ORTHO05D008338 2.2e-93 346.3 286 62.2
Glyma.12G075000 Glycine max HOM05D006681 ORTHO05D008338 4.1e-92 342.0 292 60.3
Lj3g0011020 Lotus japonicus HOM05D006681 ORTHO05D008338 1.6e-91 340.1 235 70.6
SGA_v2.0_scaffold134G34764 Striga asiatica HOM05D006681 ORTHO05D008338 7.7e-91 337.8 255 68.2
HPP92_006593 Vanilla planifolia HOM05D006681 ORTHO05D008338 7.7e-91 337.8 285 58.9
Lj1A175T11 Lonicera japonica HOM05D006681 ORTHO05D008338 1.7e-90 336.7 284 63.0
Thhalv10002633m.g Eutrema salsugineum HOM05D006681 ORTHO05D008338 1.9e-89 333.2 275 62.9
Nitab4.5_0002684g0190 Nicotiana tabacum HOM05D006681 ORTHO05D008338 2.1e-88 329.7 261 64.4
Zm00001eb266060 Zea mays HOM05D006681 ORTHO05D008338 2.1e-88 329.7 289 57.1
Carub.0003s2829 Capsella rubella HOM05D006681 ORTHO05D008338 2.7e-88 329.3 290 57.6
Aa31LG4G15300 Aethionema arabicum HOM05D006681 ORTHO05D008338 5.2e-87 325.1 367 49.0
vmacro03125 Vaccinium macrocarpon HOM05D006681 ORTHO05D008338 2.8e-85 319.3 283 62.2
Dinv32860 Davidia involucrata HOM05D006681 ORTHO05D008338 2.7e-80 302.8 222 70.7
Duzib168G1095 Durio zibethinus HOM05D006681 ORTHO05D008338 6.1e-80 301.6 288 56.2
MELO3C013668.2 Cucumis melo HOM05D006681 ORTHO05D008338 3.4e-78 295.8 253 61.3
Ah.08g214980 Amaranthus hybridus HOM05D006681 ORTHO05D008338 1.7e-77 293.5 287 54.4
Nitab4.5_0001953g0020 Nicotiana tabacum HOM05D006681 ORTHO05D008338 2.2e-77 293.1 259 59.8
AUR62009646 Chenopodium quinoa HOM05D006681 ORTHO05D008338 2.4e-76 289.7 283 53.7
Pp3c11_23040 Physcomitrium patens HOM05D006681 ORTHO05D008338 2.9e-74 282.7 286 51.7
AagrBONN_evm.TU.Sc2ySwM_228.1772 Anthoceros agrestis HOM05D006681 ORTHO05D008338 7.2e-73 278.1 277 52.0
Haze_24007 Corylus avellana HOM05D006681 ORTHO05D008338 8.0e-72 274.6 443 42.0
SMO367G0798 Selaginella moellendorffii HOM05D006681 ORTHO05D008338 5.7e-70 268.5 278 51.4
Cpa.g.sc2126.1 Carica papaya HOM05D006681 ORTHO05D008338 1.7e-69 266.9 208 67.3
Mapoly0128s0008 Marchantia polymorpha HOM05D006681 ORTHO05D008338 4.1e-68 262.3 286 49.7
Sc06g0008190 Simmondsia chinensis HOM05D006681 ORTHO05D008338 1.0e-66 257.7 181 68.0
Nitab4.5_0001953g0050 Nicotiana tabacum HOM05D006681 ORTHO05D008338 4.4e-62 242.3 268 49.3
Hund05017 Selenicereus undatus HOM05D006681 ORTHO05D008338 1.0e-55 221.1 288 46.2
AL1G56400 Arabidopsis lyrata HOM05D006681 ORTHO05D008338 5.2e-55 218.8 158 65.8
SEGI_27570 Sequoiadendron giganteum HOM05D006681 ORTHO05D008338 5.2e-55 218.8 199 57.8
CBR_g415 Chara braunii HOM05D006681 ORTHO05D008338 1.3e-53 214.2 344 37.5
Pp3c11_23047 Physcomitrium patens HOM05D006681 ORTHO05D008338 2.7e-51 206.5 173 58.4
ATR0759G055 Amborella trichopoda HOM05D006681 ORTHO05D008338 1.2e-40 171.0 178 52.2
Nitab4.5_0000766g0030 Nicotiana tabacum HOM05D006681 ORTHO05D008338 7.3e-33 145.2 142 54.9
CAN.G1289.2 Capsicum annuum HOM05D006681 ORTHO05D008338 2.9e-29 133.3 204 41.7
Sc06g0008200 Simmondsia chinensis HOM05D006681 ORTHO05D008338 5.3e-23 112.5 107 53.3
PRCOL_00001211 Prasinoderma coloniale HOM05D006681 ORTHO05D008338 5.8e-22 109.0 256 28.1
MCO11G760 Micromonas commoda HOM05D006681 ORTHO05D008338 3.8e-21 106.3 255 29.4
MD03G1102800 Malus domestica HOM05D006681 ORTHO05D008338 4.9e-21 105.9 76 65.8
Glyma.11G145018 Glycine max HOM05D006681 ORTHO05D008338 8.4e-21 105.1 110 50.0
CDE08G1356 Ceratophyllum demersum HOM05D006681 ORTHO05D008338 5.3e-15 85.9 67 56.7
Nitab4.5_0001068g0110 Nicotiana tabacum HOM05D006681 ORTHO05D008338 2.1e-11 73.9 53 62.3
Actinidia20468 Actinidia chinensis HOM05D006681 ORTHO05D008338 1.2e-06 58.2 44 65.9


User provided reference genes

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