Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G130500 Manihot esculenta HOM05D004353 ORTHO05D004989 4.3e-142 508.1 269 100.0
Potri.006G123800 Populus trichocarpa HOM05D004353 ORTHO05D004989 1.5e-67 260.4 254 55.5
Sabra06G0098000 Salix brachista HOM05D004353 ORTHO05D004989 8.5e-66 254.6 251 52.6
Cpa.g.sc9.354 Carica papaya HOM05D004353 ORTHO05D004989 5.7e-62 241.9 249 53.4
Thecc.09G282100 Theobroma cacao HOM05D004353 ORTHO05D004989 1.7e-58 230.3 231 55.0
TWI63G0567 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 8.5e-58 228.0 181 65.2
Gohir.A13G222400 Gossypium hirsutum HOM05D004353 ORTHO05D004989 2.5e-57 226.5 193 59.1
Gorai.013G257700 Gossypium raimondii HOM05D004353 ORTHO05D004989 3.2e-57 226.1 232 53.0
Gohir.D10G228800 Gossypium hirsutum HOM05D004353 ORTHO05D004989 4.2e-57 225.7 244 52.0
QL10p054510 Quercus lobata HOM05D004353 ORTHO05D004989 5.5e-57 225.3 239 49.4
QL10p053348 Quercus lobata HOM05D004353 ORTHO05D004989 7.2e-57 224.9 250 50.0
Gorai.011G261300 Gossypium raimondii HOM05D004353 ORTHO05D004989 9.4e-57 224.6 238 51.7
Gorai.012G140500 Gossypium raimondii HOM05D004353 ORTHO05D004989 1.4e-55 220.7 190 58.9
Gohir.D13G227200 Gossypium hirsutum HOM05D004353 ORTHO05D004989 5.7e-54 215.3 190 57.9
MD08G1231200 Malus domestica HOM05D004353 ORTHO05D004989 1.3e-53 214.2 204 56.4
Cfa015265 Carpinus fangiana HOM05D004353 ORTHO05D004989 2.2e-53 213.4 234 49.6
Ciclev10021938m.g Citrus clementina HOM05D004353 ORTHO05D004989 2.2e-53 213.4 186 62.4
TWI15G0091 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 3.1e-52 209.5 181 63.0
MD15G1424100 Malus domestica HOM05D004353 ORTHO05D004989 5.9e-51 205.3 197 56.3
PGR031G1729 Punica granatum HOM05D004353 ORTHO05D004989 1.7e-50 203.8 194 55.2
Atru.chr6.1925 Acer truncatum HOM05D004353 ORTHO05D004989 8.5e-50 201.4 179 58.1
Eucgr.A01325 Eucalyptus grandis HOM05D004353 ORTHO05D004989 1.5e-49 200.7 233 51.1
Duzib168G0981 Durio zibethinus HOM05D004353 ORTHO05D004989 1.9e-49 200.3 237 51.5
RcHm_v2.0_Chr4g0406201 Rosa chinensis HOM05D004353 ORTHO05D004989 2.5e-49 199.9 246 47.6
Prupe.1G205800 Prunus persica HOM05D004353 ORTHO05D004989 4.2e-49 199.1 251 49.8
Carub.0004s2616 Capsella rubella HOM05D004353 ORTHO05D004989 1.4e-47 194.1 256 44.1
CARHR138810 Cardamine hirsuta HOM05D004353 ORTHO05D004989 4.0e-47 192.6 250 45.2
AT2G43630 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 8.8e-47 191.4 259 44.4
CiPaw.02G101000 Carya illinoinensis HOM05D004353 ORTHO05D004989 1.2e-46 191.0 249 45.4
AL4G42450 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 2.0e-46 190.3 210 50.0
Oeu043896.1 Olea europaea HOM05D004353 ORTHO05D004989 2.0e-46 190.3 181 54.1
Aa31LG1G25350 Aethionema arabicum HOM05D004353 ORTHO05D004989 3.3e-46 189.5 206 49.5
FAN22G0682 Fragaria x ananassa HOM05D004353 ORTHO05D004989 9.7e-46 188.0 245 44.9
Thhalv10001554m.g Eutrema salsugineum HOM05D004353 ORTHO05D004989 1.7e-45 187.2 257 43.2
FAN07G2673 Fragaria x ananassa HOM05D004353 ORTHO05D004989 2.8e-45 186.4 244 45.9
FAN12G4128 Fragaria x ananassa HOM05D004353 ORTHO05D004989 6.3e-45 185.3 244 46.3
FAN17G1422 Fragaria x ananassa HOM05D004353 ORTHO05D004989 6.3e-45 185.3 247 45.7
FAN12G3936 Fragaria x ananassa HOM05D004353 ORTHO05D004989 8.2e-45 184.9 244 46.3
Sp4g25730 Schrenkiella parvula HOM05D004353 ORTHO05D004989 8.2e-45 184.9 259 42.9
Sc05g0005560 Simmondsia chinensis HOM05D004353 ORTHO05D004989 1.1e-44 184.5 189 51.9
Prupe.1G570000 Prunus persica HOM05D004353 ORTHO05D004989 1.4e-44 184.1 210 51.0
FvH4_4g10550 Fragaria vesca HOM05D004353 ORTHO05D004989 4.1e-44 182.6 243 46.1
GSVIVG01038129001 Vitis vinifera HOM05D004353 ORTHO05D004989 5.3e-44 182.2 226 47.8
ClCG03G006580 Citrullus lanatus HOM05D004353 ORTHO05D004989 7.0e-44 181.8 191 53.9
CANSAT54G2783 Cannabis sativa HOM05D004353 ORTHO05D004989 1.3e-42 177.6 250 43.2
COL.COLO4_19851 Corchorus olitorius HOM05D004353 ORTHO05D004989 1.7e-42 177.2 180 54.4
BcaB06g29332 Brassica carinata HOM05D004353 ORTHO05D004989 5.0e-42 175.6 244 43.4
CsaV3_1G036770 Cucumis sativus L. HOM05D004353 ORTHO05D004989 5.0e-42 175.6 195 49.2
BcaC02g07160 Brassica carinata HOM05D004353 ORTHO05D004989 1.9e-41 173.7 244 45.9
Atru.chr4.1388 Acer truncatum HOM05D004353 ORTHO05D004989 2.5e-41 173.3 220 48.2
BolC4t28561H Brassica oleracea HOM05D004353 ORTHO05D004989 2.5e-41 173.3 244 45.9
BraA04t18750Z Brassica rapa HOM05D004353 ORTHO05D004989 2.5e-41 173.3 242 43.8
C04p70590 Brassica napus HOM05D004353 ORTHO05D004989 3.2e-41 172.9 216 47.7
AUR62025025 Chenopodium quinoa HOM05D004353 ORTHO05D004989 7.2e-41 171.8 232 44.0
A04p32910 Brassica napus HOM05D004353 ORTHO05D004989 3.6e-40 169.5 213 47.4
Hma1.2p1_0017F.1_g011670 Hydrangea macrophylla HOM05D004353 ORTHO05D004989 3.6e-40 169.5 233 44.6
Sed0022603 Sechium edule HOM05D004353 ORTHO05D004989 3.6e-40 169.5 235 43.0
THA.LOC104803988 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 4.7e-40 169.1 253 39.9
Peaxi162Scf00008g03715 Petunia axillaris HOM05D004353 ORTHO05D004989 1.0e-39 167.9 175 51.4
AUR62006505 Chenopodium quinoa HOM05D004353 ORTHO05D004989 1.4e-39 167.5 219 42.5
Migut.M00919 Erythranthe guttata HOM05D004353 ORTHO05D004989 4.0e-39 166.0 218 42.7
TAR362G0930 Trochodendron aralioides HOM05D004353 ORTHO05D004989 3.4e-38 162.9 208 45.2
Duzib150G0228 Durio zibethinus HOM05D004353 ORTHO05D004989 4.4e-38 162.5 196 49.5
MSTRG.16235 Avicennia marina HOM05D004353 ORTHO05D004989 9.8e-38 161.4 174 52.3
Cc04_g05110 Coffea canephora HOM05D004353 ORTHO05D004989 1.3e-37 161.0 176 48.3
Lj2g0015848 Lotus japonicus HOM05D004353 ORTHO05D004989 1.3e-37 161.0 189 47.1
Sp5g03540 Schrenkiella parvula HOM05D004353 ORTHO05D004989 1.7e-37 160.6 226 42.5
Ah.03g147060 Amaranthus hybridus HOM05D004353 ORTHO05D004989 4.8e-37 159.1 183 45.9
MELO3C002758.2 Cucumis melo HOM05D004353 ORTHO05D004989 6.3e-37 158.7 199 45.7
TAR633G2112 Trochodendron aralioides HOM05D004353 ORTHO05D004989 6.3e-37 158.7 187 47.1
VMungo1215G1727 Vigna mungo HOM05D004353 ORTHO05D004989 2.4e-36 156.8 192 44.3
Hund04296 Selenicereus undatus HOM05D004353 ORTHO05D004989 3.1e-36 156.4 244 42.6
THA.LOC104802322 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 7.0e-36 155.2 245 41.2
CAN.G162.60 Capsicum annuum HOM05D004353 ORTHO05D004989 2.0e-35 153.7 175 46.9
RcHm_v2.0_Chr2g0115921 Rosa chinensis HOM05D004353 ORTHO05D004989 2.0e-35 153.7 216 45.4
A09p51910 Brassica napus HOM05D004353 ORTHO05D004989 2.7e-35 153.3 256 39.8
Sed0011106 Sechium edule HOM05D004353 ORTHO05D004989 4.5e-35 152.5 250 42.0
BraA09t40627Z Brassica rapa HOM05D004353 ORTHO05D004989 5.9e-35 152.1 256 39.5
Nitab4.5_0000214g0170 Nicotiana tabacum HOM05D004353 ORTHO05D004989 2.9e-34 149.8 174 47.1
Glyma.09G118100 Glycine max HOM05D004353 ORTHO05D004989 5.0e-34 149.1 195 42.1
Haze_01374 Corylus avellana HOM05D004353 ORTHO05D004989 8.6e-34 148.3 291 38.5
Glyma.07G165200 Glycine max HOM05D004353 ORTHO05D004989 1.1e-33 147.9 182 44.5
Solyc04g054460.3 Solanum lycopersicum HOM05D004353 ORTHO05D004989 1.1e-33 147.9 213 44.6
arahy.Tifrunner.gnm1.ann1.ZXP0UV Arachis hypogaea HOM05D004353 ORTHO05D004989 1.9e-33 147.1 238 35.7
BcaC07g40494 Brassica carinata HOM05D004353 ORTHO05D004989 2.5e-33 146.7 190 46.3
C08p34630 Brassica napus HOM05D004353 ORTHO05D004989 2.5e-33 146.7 190 46.3
BolC8t51065H Brassica oleracea HOM05D004353 ORTHO05D004989 2.5e-33 146.7 190 46.3
Sopen04g024280 Solanum pennellii HOM05D004353 ORTHO05D004989 4.2e-33 146.0 213 44.1
BcaC07g40471 Brassica carinata HOM05D004353 ORTHO05D004989 5.5e-33 145.6 208 42.3
FAN19G0170 Fragaria x ananassa HOM05D004353 ORTHO05D004989 7.2e-33 145.2 233 40.3
Nitab4.5_0000518g0010 Nicotiana tabacum HOM05D004353 ORTHO05D004989 7.2e-33 145.2 174 46.0
EL10Ac6g15412 Beta vulgaris HOM05D004353 ORTHO05D004989 8.0e-32 141.7 215 41.4
Phvul.003G023800 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 4.0e-31 139.4 184 44.0
unitig_61.g26169 Utricularia gibba HOM05D004353 ORTHO05D004989 4.0e-31 139.4 181 43.1
PSO017G5600 Papaver somniferum HOM05D004353 ORTHO05D004989 6.8e-31 138.7 192 40.6
HanXRQChr10g0307981 Helianthus annuus HOM05D004353 ORTHO05D004989 2.6e-30 136.7 185 40.5
Atru.chr6.1923 Acer truncatum HOM05D004353 ORTHO05D004989 5.7e-30 135.6 100 65.0
arahy.Tifrunner.gnm1.ann1.WL5XYL Arachis hypogaea HOM05D004353 ORTHO05D004989 7.5e-30 135.2 238 34.5
Gorai.013G194600 Gossypium raimondii HOM05D004353 ORTHO05D004989 2.8e-29 133.3 194 43.3
AT3G59640 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 8.3e-29 131.7 231 39.0
FvH4_1g21910 Fragaria vesca HOM05D004353 ORTHO05D004989 1.1e-28 131.3 172 43.6
SalBow8G1390 Salvia bowleyana HOM05D004353 ORTHO05D004989 1.1e-28 131.3 170 42.9
Aqoxy3G00280 Aquilegia oxysepala HOM05D004353 ORTHO05D004989 1.4e-28 131.0 193 40.4
Ca_17991_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 3.1e-28 129.8 184 41.8
Carub.0005s2635 Capsella rubella HOM05D004353 ORTHO05D004989 4.1e-28 129.4 234 37.2
PSO675G4101 Papaver somniferum HOM05D004353 ORTHO05D004989 4.1e-28 129.4 189 37.6
AL5G41660 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 5.4e-28 129.0 230 39.6
FAN28G0555 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.2e-27 127.9 230 39.1
Lalb_Chr10g0096191 Lupinus albus HOM05D004353 ORTHO05D004989 1.2e-27 127.9 178 43.8
PGSC0003DMG400005514 Solanum tuberosum HOM05D004353 ORTHO05D004989 1.2e-27 127.9 150 49.3
MBI08_g25559_MAGBIO Magnolia biondii HOM05D004353 ORTHO05D004989 1.6e-27 127.5 162 44.4
Lalb_Chr02g0158251 Lupinus albus HOM05D004353 ORTHO05D004989 7.8e-27 125.2 243 35.4
Gorai.012G140700 Gossypium raimondii HOM05D004353 ORTHO05D004989 1.0e-26 124.8 88 64.8
ATR0743G161 Amborella trichopoda HOM05D004353 ORTHO05D004989 1.7e-26 124.0 179 40.8
Lalb_Chr21g0317861 Lupinus albus HOM05D004353 ORTHO05D004989 1.7e-26 124.0 164 43.3
Lsat_1_v5_gn_5_149741 Lactuca sativa HOM05D004353 ORTHO05D004989 2.9e-26 123.2 189 36.5
Lalb_Chr22g0353411 Lupinus albus HOM05D004353 ORTHO05D004989 2.9e-26 123.2 237 35.9
FAN26G0137 Fragaria x ananassa HOM05D004353 ORTHO05D004989 6.6e-26 122.1 165 44.8
ECA248G0230 Erigeron canadensis HOM05D004353 ORTHO05D004989 1.5e-25 120.9 180 40.6
SGA_v2.0_scaffold1G00163 Striga asiatica HOM05D004353 ORTHO05D004989 2.5e-25 120.2 249 35.3
SHI23072 Sapria himalayana HOM05D004353 ORTHO05D004989 8.0e-24 115.2 207 39.1
MSTRG.19791 Avicennia marina HOM05D004353 ORTHO05D004989 1.0e-23 114.8 97 54.6
Nitab4.5_0001095g0110 Nicotiana tabacum HOM05D004353 ORTHO05D004989 2.3e-23 113.6 132 47.0
DCAR_005473 Daucus carota HOM05D004353 ORTHO05D004989 1.3e-21 107.8 180 36.7
Ca_02292_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 1.1e-20 104.8 181 38.1
TPR.G36930 Trifolium pratense HOM05D004353 ORTHO05D004989 4.1e-20 102.8 159 42.1
Ca_13736_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 7.0e-20 102.1 190 37.9
CDE05G3235 Ceratophyllum demersum HOM05D004353 ORTHO05D004989 1.2e-19 101.3 127 48.8
HPP92_005597 Vanilla planifolia HOM05D004353 ORTHO05D004989 5.9e-19 99.0 190 36.8
arahy.Tifrunner.gnm1.ann1.35HMJH Arachis hypogaea HOM05D004353 ORTHO05D004989 1.0e-18 98.2 209 33.0
Lj2g0004083 Lotus japonicus HOM05D004353 ORTHO05D004989 2.3e-18 97.1 164 41.5
Actinidia06605 Actinidia chinensis HOM05D004353 ORTHO05D004989 6.6e-18 95.5 220 31.8
Dinv40298 Davidia involucrata HOM05D004353 ORTHO05D004989 6.6e-18 95.5 174 39.7
arahy.Tifrunner.gnm1.ann1.I4T7AK Arachis hypogaea HOM05D004353 ORTHO05D004989 8.6e-18 95.1 212 33.0
Medtr1g030860 Medicago truncatula HOM05D004353 ORTHO05D004989 1.1e-17 94.7 177 35.6
Psat6g042920 Pisum sativum HOM05D004353 ORTHO05D004989 4.3e-17 92.8 212 32.5
Medtr6g012760 Medicago truncatula HOM05D004353 ORTHO05D004989 7.3e-17 92.0 184 36.4
Zm00001eb246630 Zea mays HOM05D004353 ORTHO05D004989 9.5e-17 91.7 174 32.8
Phvul.006G120600 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 1.6e-16 90.9 170 37.6
Psat1g079080 Pisum sativum HOM05D004353 ORTHO05D004989 1.6e-16 90.9 181 34.8
Glyma.09G032300 Glycine max HOM05D004353 ORTHO05D004989 4.7e-16 89.4 187 36.9
Os02g0606000 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 8.0e-16 88.6 212 31.6
HPP92_005578 Vanilla planifolia HOM05D004353 ORTHO05D004989 1.1e-15 88.2 164 37.8
Zm00001eb184150 Zea mays HOM05D004353 ORTHO05D004989 2.3e-15 87.0 182 34.1
TPR.G8801 Trifolium pratense HOM05D004353 ORTHO05D004989 3.1e-15 86.7 161 38.5
VMungo0540G0595 Vigna mungo HOM05D004353 ORTHO05D004989 4.0e-15 86.3 193 34.2
CARHR169980 Cardamine hirsuta HOM05D004353 ORTHO05D004989 8.9e-15 85.1 175 41.1
Atru.chr4.262 Acer truncatum HOM05D004353 ORTHO05D004989 1.2e-14 84.7 91 53.8
Glyma.15G137300 Glycine max HOM05D004353 ORTHO05D004989 4.4e-14 82.8 229 32.3
Nn1g09685 Nelumbo nucifera HOM05D004353 ORTHO05D004989 1.7e-13 80.9 84 41.7
Medtr8g077030 Medicago truncatula HOM05D000149 ORTHO05D004989 4.9e-13 79.3 184 34.8
AUR62039440 Chenopodium quinoa HOM05D004353 ORTHO05D004989 8.3e-13 78.6 79 48.1
C04p04620 Brassica napus HOM05D004353 ORTHO05D004989 1.1e-12 78.2 75 46.7
MD10G1168700 Malus domestica HOM05D004353 ORTHO05D004989 3.2e-12 76.6 64 59.4
BcaB02g08913 Brassica carinata HOM05D004353 ORTHO05D004989 1.7e-10 70.9 75 45.3
BolC4t22093H Brassica oleracea HOM05D004353 ORTHO05D004989 1.7e-10 70.9 75 45.3
Os04g0493300 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 1.9e-09 67.4 184 31.5
BcaC02g12375 Brassica carinata HOM05D004353 ORTHO05D004989 2.5e-09 67.0 65 44.6


User provided reference genes

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