Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 5.0e-58 227.6 121 100.0
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 7.2e-49 197.2 121 86.8
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 9.4e-49 196.8 121 86.8
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 9.4e-49 196.8 121 86.0
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 9.4e-49 196.8 121 86.0
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 1.6e-48 196.1 120 85.8
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 2.7e-48 195.3 119 86.6
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 4.7e-48 194.5 118 86.4
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 4.7e-48 194.5 119 86.6
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 8.0e-48 193.7 121 84.3
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 2.3e-47 192.2 119 85.7
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 5.2e-47 191.0 121 85.1
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 6.8e-47 190.7 120 84.2
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.5e-46 189.5 121 85.1
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 3.4e-46 188.3 119 81.5
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 4.4e-46 188.0 121 85.1
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 4.4e-46 188.0 121 85.1
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 5.7e-46 187.6 121 82.6
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 5.7e-46 187.6 121 82.6
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 5.7e-46 187.6 121 85.1
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 5.7e-46 187.6 121 81.8
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 7.5e-46 187.2 121 85.1
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 7.5e-46 187.2 121 85.1
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 9.8e-46 186.8 120 83.3
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 9.8e-46 186.8 121 81.0
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 2.2e-45 185.7 121 83.5
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 3.7e-45 184.9 120 82.5
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 3.7e-45 184.9 121 80.2
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 4.8e-45 184.5 121 81.0
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 6.3e-45 184.1 120 80.8
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 6.3e-45 184.1 120 83.3
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 8.3e-45 183.7 121 81.0
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 1.1e-44 183.3 121 80.2
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.4e-44 183.0 120 81.7
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 1.4e-44 183.0 121 82.6
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 1.8e-44 182.6 120 81.7
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 1.8e-44 182.6 119 82.4
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 3.1e-44 181.8 121 81.0
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 5.4e-44 181.0 119 81.5
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 1.6e-43 179.5 118 79.7
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 1.6e-43 179.5 118 82.2
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 3.5e-43 178.3 118 78.8
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 3.5e-43 178.3 115 80.9
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 3.5e-43 178.3 118 82.2
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 7.7e-43 177.2 122 80.3
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 7.7e-43 177.2 122 80.3
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 7.7e-43 177.2 119 79.0
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.0e-42 176.8 118 78.8
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 1.3e-42 176.4 114 79.8
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 1.3e-42 176.4 117 78.6
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 1.3e-42 176.4 117 78.6
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 1.3e-42 176.4 121 79.3
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 1.7e-42 176.0 118 78.8
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.2e-42 175.6 121 79.3
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 2.2e-42 175.6 120 79.2
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 3.8e-42 174.9 117 78.6
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 3.8e-42 174.9 117 78.6
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 5.0e-42 174.5 119 78.2
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 5.0e-42 174.5 125 76.8
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 1.1e-41 173.3 121 78.5
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 1.1e-41 173.3 118 77.1
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 1.1e-41 173.3 118 77.1
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 1.5e-41 172.9 118 78.0
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 1.5e-41 172.9 121 77.7
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 1.9e-41 172.6 121 78.5
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 2.5e-41 172.2 119 77.3
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 3.2e-41 171.8 117 77.8
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 3.2e-41 171.8 120 75.8
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 7.2e-41 170.6 115 77.4
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 1.6e-40 169.5 121 76.9
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.6e-40 169.5 101 85.1
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 3.6e-40 168.3 121 72.7
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 4.7e-40 167.9 121 76.0
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 4.7e-40 167.9 100 85.0
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.7e-40 167.9 100 85.0
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.7e-40 167.9 100 85.0
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.7e-40 167.9 100 85.0
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 4.7e-40 167.9 117 77.8
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 8.0e-40 167.2 119 75.6
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 1.0e-39 166.8 106 82.1
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 1.8e-39 166.0 119 73.9
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 1.8e-39 166.0 100 84.0
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 2.3e-39 165.6 114 74.6
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 3.0e-39 165.2 113 75.2
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 3.0e-39 165.2 111 77.5
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 4.0e-39 164.9 105 81.9
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 4.0e-39 164.9 118 74.6
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 5.2e-39 164.5 121 74.4
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 6.8e-39 164.1 102 79.4
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 8.8e-39 163.7 106 82.1
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 1.2e-38 163.3 115 75.7
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 2.0e-38 162.5 117 73.5
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 2.0e-38 162.5 104 79.8
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 9.8e-38 160.2 119 73.1
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 1.3e-37 159.8 102 78.4
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 1.7e-37 159.5 115 74.8
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 2.2e-37 159.1 120 72.5
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 2.2e-37 159.1 120 72.5
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 2.2e-37 159.1 112 70.5
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 2.8e-37 158.7 120 72.5
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 2.8e-37 158.7 120 72.5
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 3.7e-37 158.3 120 72.5
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 6.3e-37 157.5 120 70.8
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 1.4e-36 156.4 118 69.5
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.8e-36 156.0 120 70.8
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 5.4e-36 154.5 120 73.3
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 5.4e-36 154.5 120 69.2
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 5.4e-36 154.5 120 70.0
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 5.4e-36 154.5 134 67.2
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 7.0e-36 154.1 119 70.6
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 9.2e-36 153.7 98 77.6
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.2e-35 153.3 119 71.4
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 1.6e-35 152.9 96 81.2
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 7.8e-35 150.6 118 71.2
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 1.3e-34 149.8 109 70.6
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 1.7e-34 149.4 103 78.6
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 6.6e-34 147.5 104 75.0
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 1.9e-33 146.0 121 67.8
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.2e-32 143.3 85 83.5
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 1.5e-30 136.3 100 72.0
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 1.3e-29 133.3 109 71.6
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 8.3e-29 130.6 103 66.0
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.8e-28 129.4 89 77.5
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 2.0e-27 125.9 111 60.4
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 3.5e-27 125.2 103 63.1
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 7.8e-27 124.0 85 78.8
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 1.8e-23 112.8 67 80.6
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 3.1e-23 112.1 87 69.0
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 3.1e-23 112.1 87 69.0
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 8.9e-23 110.5 68 80.9
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 4.4e-22 108.2 69 76.8
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 5.8e-22 107.8 69 76.8
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 6.4e-21 104.4 70 74.3
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 4.1e-20 101.7 98 53.1
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 7.0e-20 100.9 64 76.6
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 3.9e-18 95.1 117 54.7
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 5.0e-18 94.7 74 66.2
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 4.3e-17 91.7 57 77.2
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 1.2e-16 90.1 85 58.8
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 1.6e-16 89.7 73 64.4
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 2.1e-16 89.4 56 76.8
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 4.0e-15 85.1 91 54.9
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 5.2e-15 84.7 68 66.2
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 8.3e-13 77.4 103 44.7
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 1.1e-12 77.0 120 43.3
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 4.1e-12 75.1 82 53.7
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 4.6e-11 71.6 50 78.0
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 3.9e-10 68.6 53 62.3
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 8.6e-10 67.4 90 48.9
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 8.6e-10 67.4 60 56.7
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 3.3e-09 65.5 116 37.1
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 1.2e-08 63.5 95 48.4
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 2.1e-08 62.8 44 72.7
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 4.7e-08 61.6 56 62.5
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 8.1e-08 60.8 75 48.0
arahy.Tifrunner.gnm1.ann1.PZN0G5 Arachis hypogaea HOM05D001997 ORTHO05D005560 4.0e-07 58.5 38 71.1
RcHm_v2.0_Chr7g0211671 Rosa chinensis HOM05D003587 ORTHO05D004139 1.5e-06 56.6 44 61.4
RcHm_v2.0_Chr1g0327371 Rosa chinensis HOM05D001997 ORTHO05D005560 7.6e-06 54.3 44 59.1
arahy.Tifrunner.gnm1.ann1.PD5CRZ Arachis hypogaea HOM05D001997 ORTHO05D005560 9.9e-06 53.9 43 65.1


User provided reference genes

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