Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 2.7e-121 438.7 231 100.0
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 9.2e-61 237.7 226 55.8
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 2.3e-59 233.0 203 62.6
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 5.6e-58 228.4 172 67.4
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 1.1e-56 224.2 175 63.4
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 2.0e-55 219.9 154 67.5
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 3.4e-55 219.2 169 65.1
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 7.5e-55 218.0 211 57.3
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 8.3e-54 214.5 201 58.7
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 1.1e-53 214.2 232 51.3
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 1.4e-53 213.8 212 57.1
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 1.9e-53 213.4 209 56.5
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 4.1e-53 212.2 213 55.9
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 5.4e-53 211.8 211 56.4
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 1.6e-52 210.3 168 63.1
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 2.7e-52 209.5 199 57.3
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 2.7e-52 209.5 159 66.7
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 4.6e-52 208.8 210 55.7
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 7.8e-52 208.0 153 67.3
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 2.3e-51 206.5 146 69.2
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 3.9e-51 205.7 154 67.5
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 5.1e-51 205.3 203 56.7
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 5.1e-51 205.3 238 51.7
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 8.6e-51 204.5 173 57.2
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 1.1e-50 204.1 161 64.6
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 3.3e-50 202.6 165 61.2
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 4.3e-50 202.2 161 59.0
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 7.3e-50 201.4 215 52.1
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 9.5e-50 201.1 224 50.4
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 2.1e-49 199.9 191 55.5
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 1.8e-48 196.8 205 51.2
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 3.1e-48 196.1 216 50.5
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 8.9e-48 194.5 190 55.8
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 1.2e-47 194.1 185 57.3
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 1.5e-47 193.7 213 51.6
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 2.6e-47 193.0 170 57.1
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 3.4e-47 192.6 170 57.1
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 3.4e-47 192.6 223 49.3
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 2.2e-46 189.9 169 57.4
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 2.9e-46 189.5 161 57.8
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 4.2e-45 185.7 187 53.5
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 7.1e-45 184.9 157 60.5
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 9.2e-45 184.5 155 60.0
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 2.1e-44 183.3 220 49.5
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 3.5e-44 182.6 213 48.4
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 7.8e-44 181.4 205 47.3
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 3.0e-43 179.5 159 57.9
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 4.3e-42 175.6 213 48.4
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 1.2e-41 174.1 220 49.1
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 2.1e-41 173.3 162 57.4
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 8.1e-41 171.4 220 47.7
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 1.1e-40 171.0 238 44.1
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 2.4e-40 169.9 156 57.1
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 1.2e-39 167.5 128 64.1
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 1.5e-39 167.2 161 52.8
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 4.9e-38 162.2 179 49.2
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 6.4e-38 161.8 170 52.4
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 1.1e-37 161.0 179 48.0
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 1.6e-36 157.1 127 59.8
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 6.0e-36 155.2 177 46.9
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 3.0e-35 152.9 161 52.2
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 6.6e-35 151.8 198 44.9
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 6.6e-35 151.8 215 43.3
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 2.1e-33 146.7 111 61.3
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 2.8e-33 146.4 99 71.7
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 5.3e-32 142.1 150 49.3
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.2e-31 141.0 154 49.4
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 5.8e-31 138.7 135 54.8
Ah.13g073570 Amaranthus hybridus HOM05D003796 ORTHO05D004486 7.6e-31 138.3 163 48.5
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 9.9e-31 137.9 116 58.6
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 2.2e-30 136.7 175 42.9
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 5.4e-29 132.1 163 46.0
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 2.7e-28 129.8 142 44.4
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 7.9e-28 128.3 229 38.0
ClCG06G001080 Citrullus lanatus HOM05D003796 ORTHO05D004486 2.1e-25 120.2 145 49.0
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 1.8e-24 117.1 85 68.2
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 4.0e-24 115.9 144 41.0
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 2.6e-23 113.2 126 45.2
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 5.8e-23 112.1 141 39.7
Oeu021569.1 Olea europaea HOM05D003796 ORTHO05D004486 2.9e-22 109.8 127 49.6
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 6.4e-22 108.6 140 38.6
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 8.4e-22 108.2 130 42.3
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 8.4e-22 108.2 130 42.3
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 1.1e-21 107.8 155 36.8
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 1.1e-21 107.8 153 37.9
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 1.9e-21 107.1 126 44.4
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 1.9e-21 107.1 166 36.1
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 2.5e-21 106.7 154 39.6
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 3.2e-21 106.3 153 38.6
Sabra13G0104400 Salix brachista HOM05D003796 ORTHO05D004486 4.2e-21 105.9 128 46.9
QL93p1902_0792 Quercus lobata HOM05D003796 ORTHO05D004486 5.5e-21 105.5 95 56.8
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 5.5e-21 105.5 211 37.4
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 5.5e-21 105.5 167 37.7
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 7.1e-21 105.1 125 41.6
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 7.1e-21 105.1 123 44.7
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 9.3e-21 104.8 152 37.5
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 1.2e-20 104.4 197 34.0
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 1.2e-20 104.4 140 39.3
QL10p054570 Quercus lobata HOM05D003796 ORTHO05D004486 1.2e-20 104.4 95 56.8
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 1.2e-20 104.4 175 36.6
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 1.6e-20 104.0 127 40.9
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.6e-20 104.0 166 34.9
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.6e-20 104.0 166 34.9
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 2.1e-20 103.6 156 38.5
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 2.7e-20 103.2 188 33.5
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 2.7e-20 103.2 125 42.4
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 2.7e-20 103.2 147 38.8
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 3.5e-20 102.8 218 32.6
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 3.5e-20 102.8 152 38.8
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 4.6e-20 102.4 146 37.7
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 4.6e-20 102.4 188 34.0
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 4.6e-20 102.4 215 32.6
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 6.0e-20 102.1 124 41.9
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 1.3e-19 100.9 141 39.0
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 1.3e-19 100.9 125 43.2
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 1.8e-19 100.5 141 38.3
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 1.8e-19 100.5 122 41.8
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 2.3e-19 100.1 206 34.0
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 3.0e-19 99.8 222 32.4
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 3.0e-19 99.8 120 41.7
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 3.9e-19 99.4 138 38.4
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 3.9e-19 99.4 161 32.9
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 5.1e-19 99.0 155 36.8
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 5.1e-19 99.0 144 36.8
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 5.1e-19 99.0 184 34.8
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 6.7e-19 98.6 154 35.1
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 8.7e-19 98.2 152 36.8
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 1.1e-18 97.8 122 41.8
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 1.1e-18 97.8 183 34.4
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 1.5e-18 97.4 146 37.7
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 2.5e-18 96.7 192 33.3
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 3.3e-18 96.3 168 39.3
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 4.3e-18 95.9 142 35.9
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 5.6e-18 95.5 142 41.5
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 7.4e-18 95.1 122 41.8
Nitab4.5_0000856g0240 Nicotiana tabacum HOM05D003796 ORTHO05D004486 7.4e-18 95.1 104 50.0
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 9.6e-18 94.7 150 36.0
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 9.6e-18 94.7 191 34.0
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 2.8e-17 93.2 118 40.7
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 3.7e-17 92.8 146 37.7
FAN22G2021 Fragaria x ananassa HOM05D003796 ORTHO05D004486 4.8e-17 92.4 83 54.2
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 1.1e-16 91.3 131 42.0
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 1.1e-16 91.3 106 42.5
FAN07G1083 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.8e-16 90.5 133 42.9
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 1.8e-16 90.5 171 34.5
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 2.4e-16 90.1 147 36.7
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 3.1e-16 89.7 160 32.5
QL10p054574 Quercus lobata HOM05D003796 ORTHO05D004486 3.1e-16 89.7 72 63.9
QL93p1902_0789 Quercus lobata HOM05D003796 ORTHO05D004486 3.1e-16 89.7 72 63.9
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 5.3e-16 89.0 169 34.3
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 9.0e-16 88.2 133 38.3
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 2.6e-15 86.7 137 35.0
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 4.5e-15 85.9 122 37.7
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 7.6e-15 85.1 114 40.4
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 2.9e-14 83.2 87 47.1
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.8e-14 82.8 184 33.2
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 6.5e-14 82.0 146 34.2
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 6.5e-14 82.0 133 36.1
FAN12G2909 Fragaria x ananassa HOM05D003796 ORTHO05D004486 8.4e-14 81.6 127 39.4
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 8.4e-14 81.6 132 32.6
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.2e-13 79.7 244 29.9
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.3e-11 73.6 202 31.7
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 1.8e-08 63.9 203 26.1
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 3.1e-08 63.2 75 41.3
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 3.1e-08 63.2 79 41.8
CSS0039071 Camellia sinensis var. sinensis HOM05D055008 ORTHO05D043295 1.0e-06 58.2 55 56.4
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 1.0e-06 58.2 73 43.8
Haze_01371 Corylus avellana HOM05D003796 ORTHO05D004486 1.7e-06 57.4 62 53.2
CSS0019445 Camellia sinensis var. sinensis HOM05D055008 ORTHO05D043295 2.2e-06 57.0 47 61.7


User provided reference genes

Program Settings