Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G129200 Manihot esculenta HOM05D006500 ORTHO05D008028 5.9e-97 357.5 172 100.0
Potri.019G112100 Populus trichocarpa HOM05D006500 ORTHO05D008028 1.9e-71 272.7 158 81.6
Cpa.g.sc9.364 Carica papaya HOM05D006500 ORTHO05D008028 2.3e-69 265.8 155 81.9
Potri.013G126900 Populus trichocarpa HOM05D006500 ORTHO05D008028 2.3e-69 265.8 158 78.5
Sabra19G0108100 Salix brachista HOM05D006500 ORTHO05D008028 6.8e-69 264.2 158 79.1
Dinv33205 Davidia involucrata HOM05D006500 ORTHO05D008028 1.7e-67 259.6 149 82.6
TWI38G1400 Tripterygium wilfordii HOM05D006500 ORTHO05D008028 2.2e-67 259.2 146 82.9
ClCG06G001100 Citrullus lanatus HOM05D006500 ORTHO05D008028 2.9e-67 258.8 143 82.5
GSVIVG01038143001 Vitis vinifera HOM05D006500 ORTHO05D008028 3.8e-67 258.5 153 81.0
CSS0014789 Camellia sinensis var. sinensis HOM05D006500 ORTHO05D008028 1.1e-66 256.9 153 78.4
QL10p055774 Quercus lobata HOM05D006500 ORTHO05D008028 1.1e-66 256.9 143 83.9
Sed0015541 Sechium edule HOM05D006500 ORTHO05D008028 1.1e-66 256.9 142 83.8
TAR365G1104 Trochodendron aralioides HOM05D006500 ORTHO05D008028 1.1e-66 256.9 162 77.2
COL.COLO4_08138 Corchorus olitorius HOM05D006500 ORTHO05D008028 1.4e-66 256.5 164 75.0
CiPaw.02G100400 Carya illinoinensis HOM05D006500 ORTHO05D008028 1.9e-66 256.1 164 75.0
Atru.chr4.1419 Acer truncatum HOM05D006500 ORTHO05D008028 2.4e-66 255.8 154 77.9
Gohir.A05G327700 Gossypium hirsutum HOM05D006500 ORTHO05D008028 4.1e-66 255.0 163 75.5
Rhsim09G0010200 Rhododendron simsii HOM05D006500 ORTHO05D008028 7.1e-66 254.2 165 73.9
Nn1g09644 Nelumbo nucifera HOM05D006500 ORTHO05D008028 9.2e-66 253.8 162 75.9
Sed0014008 Sechium edule HOM05D006500 ORTHO05D008028 9.2e-66 253.8 142 81.7
Gohir.D05G327900 Gossypium hirsutum HOM05D006500 ORTHO05D008028 1.2e-65 253.4 163 76.1
Gorai.009G351800 Gossypium raimondii HOM05D006500 ORTHO05D008028 1.2e-65 253.4 163 76.1
Thecc.04G165600 Theobroma cacao HOM05D006500 ORTHO05D008028 2.1e-65 252.7 139 86.3
Prupe.1G207200 Prunus persica HOM05D006500 ORTHO05D008028 2.7e-65 252.3 150 78.0
Aqoxy2G00124 Aquilegia oxysepala HOM05D006500 ORTHO05D008028 3.5e-65 251.9 152 76.3
MELO3C022425.2 Cucumis melo HOM05D006500 ORTHO05D008028 3.5e-65 251.9 142 82.4
CsaV3_6G007030 Cucumis sativus L. HOM05D006500 ORTHO05D008028 3.5e-65 251.9 142 82.4
VMungo0251G2572 Vigna mungo HOM05D006500 ORTHO05D008028 4.6e-65 251.5 151 77.5
Ciclev10022516m.g Citrus clementina HOM05D006500 ORTHO05D008028 1.0e-64 250.4 163 74.8
Duzib268G0518 Durio zibethinus HOM05D006500 ORTHO05D008028 1.0e-64 250.4 140 85.0
MD04G1049100 Malus domestica HOM05D006500 ORTHO05D008028 1.0e-64 250.4 151 78.1
Actinidia27113 Actinidia chinensis HOM05D006500 ORTHO05D008028 1.7e-64 249.6 151 75.5
A08p36310 Brassica napus HOM05D006500 ORTHO05D008028 2.3e-64 249.2 165 70.3
CANSAT56G1821 Cannabis sativa HOM05D006500 ORTHO05D008028 2.3e-64 249.2 153 75.8
Phvul.003G296700 Phaseolus vulgaris HOM05D006500 ORTHO05D008028 3.9e-64 248.4 148 79.7
PGR083G1262 Punica granatum HOM05D006500 ORTHO05D008028 3.9e-64 248.4 159 76.1
Eucgr.A00110 Eucalyptus grandis HOM05D006500 ORTHO05D008028 5.1e-64 248.1 152 77.6
Eucgr.A00287 Eucalyptus grandis HOM05D006500 ORTHO05D008028 5.1e-64 248.1 152 77.6
Glyma.07G207800 Glycine max HOM05D006500 ORTHO05D008028 8.6e-64 247.3 155 74.8
MD17G1177800 Malus domestica HOM05D006500 ORTHO05D008028 8.6e-64 247.3 150 78.0
vmacro00698 Vaccinium macrocarpon HOM05D006500 ORTHO05D008028 8.6e-64 247.3 152 75.7
CiPaw.01G170700 Carya illinoinensis HOM05D006500 ORTHO05D008028 1.1e-63 246.9 153 76.5
RcHm_v2.0_Chr4g0405941 Rosa chinensis HOM05D006500 ORTHO05D008028 1.1e-63 246.9 154 76.0
Hma1.2p1_0108F.1_g051720 Hydrangea macrophylla HOM05D006500 ORTHO05D008028 1.5e-63 246.5 156 76.3
Glyma.02G137600 Glycine max HOM05D006500 ORTHO05D008028 1.9e-63 246.1 150 76.7
BcaC07g42119 Brassica carinata HOM05D006500 ORTHO05D008028 2.5e-63 245.7 150 73.3
BraA08t35535Z Brassica rapa HOM05D006500 ORTHO05D008028 2.5e-63 245.7 165 69.1
Carub.0001s0507 Capsella rubella HOM05D006500 ORTHO05D008028 2.5e-63 245.7 154 71.4
Solyc06g053430.4 Solanum lycopersicum HOM05D006500 ORTHO05D008028 2.5e-63 245.7 161 72.7
CARHR005240 Cardamine hirsuta HOM05D006500 ORTHO05D008028 3.3e-63 245.4 150 73.3
Thhalv10008926m.g Eutrema salsugineum HOM05D006500 ORTHO05D008028 3.3e-63 245.4 150 72.7
AT1G05720 Arabidopsis thaliana HOM05D006500 ORTHO05D008028 4.3e-63 245.0 146 74.0
BolC8t47013H Brassica oleracea HOM05D006500 ORTHO05D008028 4.3e-63 245.0 156 73.1
Sp1g04540 Schrenkiella parvula HOM05D006500 ORTHO05D008028 4.3e-63 245.0 150 73.3
BcaB03g13492 Brassica carinata HOM05D006500 ORTHO05D008028 5.6e-63 244.6 151 74.2
Lj4g0023361 Lotus japonicus HOM05D006500 ORTHO05D008028 7.3e-63 244.2 149 75.8
BcaC07g36846 Brassica carinata HOM05D006500 ORTHO05D008028 9.6e-63 243.8 156 72.4
C08p02210 Brassica napus HOM05D006500 ORTHO05D008028 9.6e-63 243.8 156 72.4
THA.LOC104800923 Tarenaya hassleriana HOM05D006500 ORTHO05D008028 1.2e-62 243.4 138 80.4
BcaC07g42115 Brassica carinata HOM05D006500 ORTHO05D008028 1.6e-62 243.0 139 77.7
BcaC07g42118 Brassica carinata HOM05D006500 ORTHO05D008028 1.6e-62 243.0 139 77.7
A09p67320 Brassica napus HOM05D006500 ORTHO05D008028 1.6e-62 243.0 139 77.7
C08p51630 Brassica napus HOM05D006500 ORTHO05D008028 1.6e-62 243.0 139 77.7
BolC8t52691H Brassica oleracea HOM05D006500 ORTHO05D008028 1.6e-62 243.0 139 77.7
Duzib151G0460 Durio zibethinus HOM05D006500 ORTHO05D008028 1.6e-62 243.0 131 85.5
Psat7g120240 Pisum sativum HOM05D006500 ORTHO05D008028 2.1e-62 242.7 148 77.0
EL10Ac3g06088 Beta vulgaris HOM05D006500 ORTHO05D008028 2.8e-62 242.3 154 74.7
Hund03202 Selenicereus undatus HOM05D006500 ORTHO05D008028 2.8e-62 242.3 145 77.9
BraA09t42063Z Brassica rapa HOM05D006500 ORTHO05D008028 4.7e-62 241.5 139 77.0
AL1G15630 Arabidopsis lyrata HOM05D006500 ORTHO05D008028 6.2e-62 241.1 146 72.6
MSTRG.4301 Avicennia marina HOM05D006500 ORTHO05D008028 6.2e-62 241.1 145 74.5
DCAR_023930 Daucus carota HOM05D006500 ORTHO05D008028 6.2e-62 241.1 150 75.3
Sopen06g018490 Solanum pennellii HOM05D006500 ORTHO05D008028 6.2e-62 241.1 146 76.0
PGSC0003DMG400016334 Solanum tuberosum HOM05D006500 ORTHO05D008028 6.2e-62 241.1 146 76.0
arahy.Tifrunner.gnm1.ann1.A3K5YX Arachis hypogaea HOM05D006500 ORTHO05D008028 8.1e-62 240.7 167 68.3
arahy.Tifrunner.gnm1.ann1.SHKR8E Arachis hypogaea HOM05D006500 ORTHO05D008028 8.1e-62 240.7 167 68.3
Medtr4g087310 Medicago truncatula HOM05D006500 ORTHO05D008028 1.4e-61 240.0 146 76.0
Lalb_Chr09g0328101 Lupinus albus HOM05D006500 ORTHO05D008028 1.8e-61 239.6 148 75.7
SGA_v2.0_scaffold283G46959 Striga asiatica HOM05D006500 ORTHO05D008028 3.1e-61 238.8 155 70.3
FAN17G0772 Fragaria x ananassa HOM05D006500 ORTHO05D008028 4.0e-61 238.4 155 73.5
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 4.0e-61 238.4 144 75.7
Ca_18638_v3 Cicer arietinum L. HOM05D006500 ORTHO05D008028 5.2e-61 238.0 134 79.9
Oeu050336.1 Olea europaea HOM05D006500 ORTHO05D008028 5.2e-61 238.0 157 70.7
FAN12G2511 Fragaria x ananassa HOM05D006500 ORTHO05D008028 6.9e-61 237.7 155 72.9
CAN.G136.13 Capsicum annuum HOM05D006500 ORTHO05D008028 9.0e-61 237.3 146 74.7
PSO732G0103 Papaver somniferum HOM05D006500 ORTHO05D008028 9.0e-61 237.3 151 73.5
SalBow3G2241 Salvia bowleyana HOM05D006500 ORTHO05D008028 9.0e-61 237.3 154 70.1
AUR62002395 Chenopodium quinoa HOM05D006500 ORTHO05D008028 1.5e-60 236.5 147 74.1
AUR62023794 Chenopodium quinoa HOM05D006500 ORTHO05D008028 1.5e-60 236.5 147 74.1
Cc03_g14120 Coffea canephora HOM05D006500 ORTHO05D008028 2.6e-60 235.7 150 73.3
FvH4_4g10450 Fragaria vesca HOM05D006500 ORTHO05D008028 2.6e-60 235.7 155 72.3
PSO675G9108 Papaver somniferum HOM05D006500 ORTHO05D008028 2.6e-60 235.7 151 72.2
Nitab4.5_0001586g0010 Nicotiana tabacum HOM05D006500 ORTHO05D008028 3.4e-60 235.3 152 73.0
Lsat_1_v5_gn_1_74920 Lactuca sativa HOM05D006500 ORTHO05D008028 1.7e-59 233.0 145 73.1
Peaxi162Scf00180g00116 Petunia axillaris HOM05D006500 ORTHO05D008028 2.2e-59 232.6 134 78.4
Oeu015723.1 Olea europaea HOM05D006500 ORTHO05D008028 4.9e-59 231.5 151 72.2
Sc25g0002800 Simmondsia chinensis HOM05D006500 ORTHO05D008028 4.9e-59 231.5 146 70.5
Migut.G01179 Erythranthe guttata HOM05D006500 ORTHO05D008028 8.4e-59 230.7 149 67.8
Nitab4.5_0002544g0040 Nicotiana tabacum HOM05D006500 ORTHO05D008028 3.2e-58 228.8 134 76.9
CDE04G3295 Ceratophyllum demersum HOM05D006500 ORTHO05D008028 9.3e-58 227.3 135 74.1
ECA248G2222 Erigeron canadensis HOM05D000003 ORTHO05D008028 2.7e-57 225.7 157 65.6
ATR0743G133 Amborella trichopoda HOM05D006500 ORTHO05D008028 6.0e-57 224.6 151 68.9
Os01g0894500 Oryza sativa ssp. japonica HOM05D006500 ORTHO05D008028 7.8e-57 224.2 135 74.1
HPP92_003580 Vanilla planifolia HOM05D006500 ORTHO05D008028 7.8e-57 224.2 136 72.8
Zm00001eb144900 Zea mays HOM05D006500 ORTHO05D008028 1.1e-55 220.3 155 66.5
Aa31LG1G8630 Aethionema arabicum HOM05D006500 ORTHO05D008028 5.6e-55 218.0 173 61.3
FAN07G0402 Fragaria x ananassa HOM05D006500 ORTHO05D008028 2.1e-54 216.1 202 56.9
FAN22G1805 Fragaria x ananassa HOM05D006500 ORTHO05D008028 2.8e-54 215.7 202 55.9
FAN12G1276 Fragaria x ananassa HOM05D006500 ORTHO05D008028 1.4e-53 213.4 207 54.6
unitig_46.g18636 Utricularia gibba HOM05D006500 ORTHO05D008028 4.0e-53 211.8 131 70.2
SEGI_07767 Sequoiadendron giganteum HOM05D006500 ORTHO05D008028 9.0e-53 210.7 148 63.5
Lj3A158T10 Lonicera japonica HOM05D006500 ORTHO05D008028 6.4e-51 204.5 127 74.8
Haze_01362 Corylus avellana HOM05D006500 ORTHO05D008028 2.1e-46 189.5 153 65.4
BcaC07g42121 Brassica carinata HOM05D006500 ORTHO05D008028 9.0e-45 184.1 139 64.0
MBI08_g33171_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 2.6e-44 182.6 105 78.1
SMO119G0117 Selaginella moellendorffii HOM05D006500 ORTHO05D008028 8.4e-43 177.6 128 60.9
Pp3c14_2450 Physcomitrium patens HOM05D006500 ORTHO05D008028 3.2e-42 175.6 135 57.0
TPR.G23526 Trifolium pratense HOM05D006500 ORTHO05D008028 3.2e-42 175.6 97 81.4
Nn1g09666 Nelumbo nucifera HOM05D006500 ORTHO05D008028 8.7e-32 141.0 83 77.1
SHI33478 Sapria himalayana HOM05D000105 ORTHO05D000023 1.5e-23 113.6 83 63.9
Ciclev10023175m.g Citrus clementina HOM05D006500 ORTHO05D008028 1.7e-22 110.2 72 72.2
CAN.G701.5 Capsicum annuum HOM05D006500 ORTHO05D008028 2.8e-14 82.8 80 50.0
CBR_g27901 Chara braunii HOM05D006500 ORTHO05D008028 2.8e-14 82.8 130 35.4
Cre01.g038950 Chlamydomonas reinhardtii HOM05D006500 ORTHO05D008028 3.7e-14 82.4 131 35.1
MBI08_g33170_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 5.2e-08 62.0 47 59.6


User provided reference genes

Program Settings