Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 9.9e-225 783.1 388 100.0
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 8.0e-158 560.8 390 70.3
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 1.3e-144 516.9 385 64.9
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 1.1e-143 513.8 388 64.9
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 1.6e-142 510.0 391 65.2
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 3.0e-141 505.8 388 63.7
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 5.4e-138 495.0 387 63.3
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 3.5e-137 492.3 381 64.0
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 2.9e-136 489.2 383 64.0
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 8.6e-136 487.6 386 61.1
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 5.2e-133 478.4 386 60.4
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 3.4e-132 475.7 359 64.3
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 4.4e-132 475.3 389 62.0
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 1.3e-131 473.8 359 63.8
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 2.9e-131 472.6 386 59.6
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 5.4e-130 468.4 393 60.3
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 9.2e-130 467.6 389 61.2
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 2.7e-129 466.1 388 59.5
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 3.5e-129 465.7 386 60.9
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 4.6e-129 465.3 386 59.6
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 7.8e-129 464.5 386 61.1
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 5.0e-128 461.8 389 60.4
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 1.1e-127 460.7 388 57.0
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 4.3e-127 458.8 388 59.3
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 5.6e-127 458.4 386 58.5
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 2.1e-126 456.4 390 60.0
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 6.2e-126 454.9 390 57.9
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 6.2e-126 454.9 406 56.7
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 1.4e-125 453.8 388 57.0
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 7.5e-124 448.0 391 59.1
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 2.2e-123 446.4 387 59.2
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 8.3e-123 444.5 446 52.7
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 1.6e-121 440.3 389 54.8
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 6.6e-120 434.9 330 62.4
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 2.1e-118 429.9 392 56.6
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 2.8e-118 429.5 385 57.7
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 2.8e-118 429.5 498 48.6
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 2.8e-118 429.5 413 53.3
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 6.2e-118 428.3 395 55.2
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.8e-117 426.8 393 53.9
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 5.8e-116 421.8 380 57.9
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 5.8e-116 421.8 386 55.7
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 2.9e-115 419.5 394 53.0
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 1.1e-114 417.5 398 52.0
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 4.1e-114 415.6 382 53.9
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 7.1e-114 414.8 371 58.0
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 5.1e-112 408.7 389 51.9
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 1.2e-110 404.1 390 54.9
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 1.6e-110 403.7 451 47.7
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 1.6e-110 403.7 496 45.4
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 6.2e-110 401.7 372 54.8
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 2.4e-109 399.8 378 55.6
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 8.9e-109 397.9 389 50.6
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 6.4e-107 391.7 403 53.1
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.1e-106 391.0 389 53.0
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 1.4e-106 390.6 371 53.4
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 2.1e-105 386.7 371 52.3
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 3.9e-104 382.5 382 50.5
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 5.1e-104 382.1 371 51.8
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 5.1e-104 382.1 371 51.8
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 6.6e-104 381.7 369 52.8
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 9.6e-103 377.9 408 50.0
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 9.6e-103 377.9 371 51.2
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 4.9e-99 365.5 398 51.0
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 7.1e-98 361.7 390 51.3
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 3.5e-97 359.4 397 50.4
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 1.2e-92 344.4 284 61.3
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 1.5e-92 344.0 284 59.9
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 2.0e-92 343.6 385 46.8
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 3.8e-91 339.3 316 57.3
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 1.4e-90 337.4 419 44.9
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 3.0e-88 329.7 378 48.9
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 6.7e-88 328.6 267 61.0
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 3.3e-87 326.2 284 57.0
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.8e-85 320.5 311 52.4
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 2.0e-84 317.0 389 44.7
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 2.0e-84 317.0 284 54.6
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 1.4e-82 310.8 401 42.6
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 3.2e-82 309.7 381 43.0
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 4.2e-82 309.3 281 55.9
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 8.7e-80 301.6 366 47.3
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 8.2e-78 295.0 283 50.5
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 3.1e-77 293.1 286 53.1
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 6.9e-77 292.0 283 55.5
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 4.5e-76 289.3 213 64.8
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 2.1e-73 280.4 284 52.1
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 8.7e-72 275.0 293 47.4
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 8.7e-72 275.0 263 52.9
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 9.7e-71 271.6 255 54.5
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 3.1e-69 266.5 215 60.5
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 5.9e-68 262.3 252 54.4
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 1.7e-67 260.8 267 51.7
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 2.2e-67 260.4 270 52.6
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 2.7e-65 253.4 295 45.8
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 6.1e-65 252.3 241 53.5
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 2.8e-62 243.4 193 59.6
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 4.8e-62 242.7 242 52.9
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 1.1e-61 241.5 242 52.5
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 1.3e-59 234.6 268 48.1
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 2.1e-57 227.3 213 56.3
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 1.4e-56 224.6 242 48.3
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 5.1e-56 222.6 254 46.5
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.5e-55 221.1 254 46.5
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 2.8e-54 216.9 254 46.1
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 2.8e-54 216.9 242 50.4
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 4.8e-54 216.1 254 44.5
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 4.1e-53 213.0 224 48.7
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 1.1e-50 204.9 255 45.1
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 9.4e-50 201.8 295 41.0
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 2.1e-49 200.7 238 47.1
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 2.7e-49 200.3 252 42.9
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 3.6e-49 199.9 254 44.5
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 1.0e-48 198.4 262 42.0
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 1.4e-48 198.0 254 44.9
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 3.0e-48 196.8 252 43.7
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 5.2e-48 196.1 253 42.7
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 5.2e-48 196.1 276 39.5
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 4.4e-47 193.0 129 71.3
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 1.7e-46 191.0 252 42.1
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 3.7e-46 189.9 242 44.6
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 8.2e-46 188.7 202 50.0
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 7.0e-45 185.7 263 41.8
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 9.1e-45 185.3 214 44.9
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 2.0e-44 184.1 266 41.0
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 3.5e-44 183.3 253 41.9
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 1.0e-43 181.8 267 40.8
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 2.9e-43 180.3 267 40.8
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 3.8e-43 179.9 151 59.6
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 4.2e-42 176.4 284 35.9
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 4.2e-42 176.4 202 47.0
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 2.1e-41 174.1 255 41.2
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 6.8e-40 169.1 270 38.1
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 2.0e-39 167.5 126 65.9
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 3.4e-39 166.8 168 50.6
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 1.0e-32 145.2 163 47.9
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 1.4e-32 144.8 215 37.7
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 7.7e-28 129.0 178 45.5
Haze_01447 Corylus avellana HOM05D001295 ORTHO05D005319 2.9e-27 127.1 77 74.0
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 9.5e-26 122.1 261 33.0
Lalb_Chr14g0372561 Lupinus albus HOM05D001295 ORTHO05D005319 1.0e-24 118.6 64 78.1
Glyma.13G345802 Glycine max HOM05D001295 ORTHO05D005319 2.3e-19 100.9 124 47.6
Sabra17G0015200 Salix brachista HOM05D001295 ORTHO05D005319 5.6e-18 96.3 180 37.8
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 9.5e-18 95.5 68 64.7
AL4G36180 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.0e-16 92.0 133 39.1
Sabra17G0001500 Salix brachista HOM05D001295 ORTHO05D005319 3.4e-15 87.0 89 48.3
Sabra17G0000500 Salix brachista HOM05D001295 ORTHO05D005319 2.2e-14 84.3 82 47.6
Cre16.g668650 Chlamydomonas reinhardtii HOM05D001295 ORTHO05D005319 7.0e-13 79.3 120 38.3
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 1.3e-11 75.1 141 34.8
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 3.0e-11 73.9 56 60.7
Medtr2g027210 Medicago truncatula HOM05D001295 ORTHO05D005319 1.1e-10 72.0 83 45.8
CBR_g21778 Chara braunii HOM05D001295 ORTHO05D005319 2.8e-09 67.4 116 37.9


User provided reference genes

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