Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G123500 Manihot esculenta HOM05D006266 ORTHO05D008016 0.0e+00 1342.4 651 100.0
Sabra17G0016500 Salix brachista HOM05D006266 ORTHO05D008016 5.2e-303 1043.9 654 78.3
Prupe.1G197500 Prunus persica HOM05D006266 ORTHO05D008016 1.2e-302 1042.7 647 77.1
Potri.017G027500 Populus trichocarpa HOM05D006266 ORTHO05D008016 3.4e-302 1041.2 628 80.3
Duzib151G0889 Durio zibethinus HOM05D006266 ORTHO05D008016 2.0e-299 1031.9 637 78.2
Thecc.04G175700 Theobroma cacao HOM05D006266 ORTHO05D008016 1.0e-298 1029.6 605 80.7
Gohir.A10G139200 Gossypium hirsutum HOM05D006266 ORTHO05D008016 1.7e-298 1028.9 597 81.2
CANSAT78G1968 Cannabis sativa HOM05D006266 ORTHO05D008016 7.3e-297 1023.5 647 77.9
Atru.chr4.1256 Acer truncatum HOM05D006266 ORTHO05D008016 1.2e-296 1022.7 657 76.0
Gorai.011G140700 Gossypium raimondii HOM05D006266 ORTHO05D008016 2.1e-296 1021.9 665 74.4
Gohir.D10G127600 Gossypium hirsutum HOM05D006266 ORTHO05D008016 1.1e-295 1019.6 665 74.3
QL10p050722 Quercus lobata HOM05D006266 ORTHO05D008016 7.5e-294 1013.4 694 72.9
Ciclev10019615m.g Citrus clementina HOM05D006266 ORTHO05D008016 2.4e-292 1008.4 540 86.3
Lalb_Chr14g0372511 Lupinus albus HOM05D006266 ORTHO05D008016 1.9e-289 998.8 549 86.2
Lj3g0007796 Lotus japonicus HOM05D006266 ORTHO05D008016 3.6e-288 994.6 543 85.6
Sc19g0002870 Simmondsia chinensis HOM05D006266 ORTHO05D008016 6.2e-288 993.8 572 81.1
Nn7g37595 Nelumbo nucifera HOM05D006266 ORTHO05D008016 1.1e-287 993.0 639 75.4
Sed0000993 Sechium edule HOM05D006266 ORTHO05D008016 1.1e-287 993.0 643 74.2
TPR.G18865 Trifolium pratense HOM05D006266 ORTHO05D008016 2.3e-287 991.9 568 81.9
GSVIVG01010835001 Vitis vinifera HOM05D006266 ORTHO05D008016 3.1e-287 991.5 537 85.1
TAR362G0699 Trochodendron aralioides HOM05D006266 ORTHO05D008016 5.2e-287 990.7 662 73.7
Ca_01251_v3 Cicer arietinum L. HOM05D006266 ORTHO05D008016 1.5e-286 989.2 561 82.5
Cfa015189 Carpinus fangiana HOM05D006266 ORTHO05D008016 2.0e-286 988.8 549 84.3
Dinv44175 Davidia involucrata HOM05D006266 ORTHO05D008016 1.3e-285 986.1 682 72.1
Glyma.15G029200 Glycine max HOM05D006266 ORTHO05D008016 6.4e-285 983.8 541 84.1
PSO675G5931 Papaver somniferum HOM05D006266 ORTHO05D008016 6.4e-285 983.8 545 84.6
CiPaw.02G052400 Carya illinoinensis HOM05D006266 ORTHO05D008016 3.2e-284 981.5 537 84.7
Psat5g289640 Pisum sativum HOM05D006266 ORTHO05D008016 5.4e-284 980.7 582 79.4
FvH4_4g10960 Fragaria vesca HOM05D006266 ORTHO05D008016 1.2e-283 979.5 548 82.5
Phvul.005G153800 Phaseolus vulgaris HOM05D006266 ORTHO05D008016 2.3e-282 975.3 541 83.9
THA.LOC104805138 Tarenaya hassleriana HOM05D006266 ORTHO05D008016 2.5e-281 971.8 658 72.0
Aa31LG1G25150 Aethionema arabicum HOM05D006266 ORTHO05D008016 5.6e-281 970.7 565 79.8
BcaC02g12401 Brassica carinata HOM05D006266 ORTHO05D008016 5.6e-281 970.7 662 72.5
A05p03740 Brassica napus HOM05D006266 ORTHO05D008016 5.6e-281 970.7 649 73.2
C04p04440 Brassica napus HOM05D006266 ORTHO05D008016 7.3e-281 970.3 557 81.0
BolC4t22077H Brassica oleracea HOM05D006266 ORTHO05D008016 7.3e-281 970.3 557 81.0
Aqoxy2G04160 Aquilegia oxysepala HOM05D006266 ORTHO05D008016 9.6e-281 969.9 540 83.1
BraA05t19361Z Brassica rapa HOM05D006266 ORTHO05D008016 9.6e-281 969.9 625 75.2
ClCG05G007190 Citrullus lanatus HOM05D006266 ORTHO05D008016 9.6e-281 969.9 713 67.7
MBI07_g02893_MAGBIO Magnolia biondii HOM05D006266 ORTHO05D008016 1.6e-280 969.1 548 82.7
Thhalv10001353m.g Eutrema salsugineum HOM05D006266 ORTHO05D008016 2.8e-280 968.4 548 81.8
AL4G42140 Arabidopsis lyrata HOM05D006266 ORTHO05D008016 6.2e-280 967.2 654 73.2
arahy.Tifrunner.gnm1.ann1.D6UD48 Arachis hypogaea HOM05D006266 ORTHO05D008016 8.1e-280 966.8 549 83.2
Eucgr.H00345 Eucalyptus grandis HOM05D006266 ORTHO05D008016 1.1e-279 966.5 537 82.1
arahy.Tifrunner.gnm1.ann1.JU07H9 Arachis hypogaea HOM05D006266 ORTHO05D008016 1.8e-279 965.7 549 83.4
VMungo1080G0961 Vigna mungo HOM05D006266 ORTHO05D008016 2.4e-279 965.3 562 80.8
AT2G43400 Arabidopsis thaliana HOM05D006266 ORTHO05D008016 3.1e-279 964.9 661 72.3
RcHm_v2.0_Chr4g0406421 Rosa chinensis HOM05D006266 ORTHO05D008016 6.8e-279 963.8 593 76.7
Sp4g25480 Schrenkiella parvula HOM05D006266 ORTHO05D008016 2.6e-278 961.8 566 79.9
Hund12414 Selenicereus undatus HOM05D006266 ORTHO05D008016 8.4e-277 956.8 681 70.0
PGR142G3304 Punica granatum HOM05D006266 ORTHO05D008016 2.4e-276 955.3 614 74.6
Carub.0004s2587 Capsella rubella HOM05D006266 ORTHO05D008016 5.4e-276 954.1 654 72.3
MD04G1042900 Malus domestica HOM05D006266 ORTHO05D008016 1.2e-275 953.0 631 74.3
ATR0743G015 Amborella trichopoda HOM05D006266 ORTHO05D008016 1.0e-274 949.9 550 78.5
CARHR138470 Cardamine hirsuta HOM05D006266 ORTHO05D008016 1.0e-274 949.9 640 72.3
Solyc12g021170.2 Solanum lycopersicum HOM05D006266 ORTHO05D008016 3.9e-274 948.0 552 79.2
HanXRQChr01g0023481 Helianthus annuus HOM05D006266 ORTHO05D008016 2.5e-273 945.3 577 77.1
CDE09G1029 Ceratophyllum demersum HOM05D006266 ORTHO05D008016 6.2e-272 940.6 559 78.5
FAN17G0658 Fragaria x ananassa HOM05D006266 ORTHO05D008016 1.4e-271 939.5 548 79.7
CsaV3_3G015950 Cucumis sativus L. HOM05D006266 ORTHO05D008016 1.8e-271 939.1 637 71.9
Sopen12g011050 Solanum pennellii HOM05D006266 ORTHO05D008016 1.5e-270 936.0 537 80.3
Migut.G01347 Erythranthe guttata HOM05D006266 ORTHO05D008016 1.3e-269 932.9 577 76.6
HPP92_022167 Vanilla planifolia HOM05D006266 ORTHO05D008016 1.4e-268 929.5 540 79.1
Lsat_1_v5_gn_1_77821 Lactuca sativa HOM05D006266 ORTHO05D008016 5.4e-268 927.5 648 70.4
Nitab4.5_0001990g0030 Nicotiana tabacum HOM05D006266 ORTHO05D008016 7.1e-268 927.2 552 77.7
vmacro00635 Vaccinium macrocarpon HOM05D006266 ORTHO05D008016 1.6e-267 926.0 707 67.0
Actinidia27081 Actinidia chinensis HOM05D006266 ORTHO05D008016 6.0e-267 924.1 666 70.3
Nitab4.5_0000505g0020 Nicotiana tabacum HOM05D006266 ORTHO05D008016 2.3e-266 922.2 552 77.4
MSTRG.4284 Avicennia marina HOM05D006266 ORTHO05D008016 1.4e-263 912.9 645 68.7
Cpa.g.sc9.312 Carica papaya HOM05D006266 ORTHO05D008016 5.3e-263 911.0 654 70.8
SGA_v2.0_scaffold17G08154 Striga asiatica HOM05D006266 ORTHO05D008016 1.2e-262 909.8 613 71.3
Oeu024477.1 Olea europaea HOM05D006266 ORTHO05D008016 1.3e-261 906.4 599 72.1
Medtr2g099040 Medicago truncatula HOM05D006266 ORTHO05D008016 2.3e-258 895.6 498 83.5
Haze_01464 Corylus avellana HOM05D006266 ORTHO05D008016 5.6e-257 891.0 834 58.3
ECA248G0977 Erigeron canadensis HOM05D006266 ORTHO05D008016 1.4e-255 886.3 514 78.6
DCAR_028531 Daucus carota HOM05D006266 ORTHO05D008016 3.1e-255 885.2 557 75.2
CAN.G51.9 Capsicum annuum HOM05D006266 ORTHO05D008016 4.0e-255 884.8 590 71.0
PSO017G5469 Papaver somniferum HOM05D006266 ORTHO05D008016 2.2e-253 879.0 545 77.2
Rhsim09G0023000 Rhododendron simsii HOM05D006266 ORTHO05D008016 3.3e-249 865.1 788 58.1
Peaxi162Scf00184g00418 Petunia axillaris HOM05D006266 ORTHO05D008016 1.3e-248 863.2 555 73.5
Pp3c26_13090 Physcomitrium patens HOM05D006266 ORTHO05D008016 3.1e-247 858.6 560 71.2
SMO141G0282 Selaginella moellendorffii HOM05D006266 ORTHO05D008016 3.2e-244 848.6 540 72.4
Hma1.2p1_0324F.1_g125550 Hydrangea macrophylla HOM05D006266 ORTHO05D008016 2.5e-241 839.0 467 81.4
Dinv44151 Davidia involucrata HOM05D006266 ORTHO05D008016 2.8e-240 835.5 478 80.5
Lj3C32G4 Lonicera japonica HOM05D006266 ORTHO05D008016 2.5e-236 822.4 654 64.2
Lj3C1G0 Lonicera japonica HOM05D006266 ORTHO05D008016 8.8e-234 813.9 646 64.4
AUR62023848 Chenopodium quinoa HOM05D006266 ORTHO05D008016 1.9e-228 796.2 558 69.4
AagrBONN_evm.TU.Sc2ySwM_117.3933 Anthoceros agrestis HOM05D006266 ORTHO05D008016 3.1e-223 778.9 495 73.1
Hma1.2p1_0324F.1_g125560 Hydrangea macrophylla HOM05D006266 ORTHO05D008016 4.1e-223 778.5 432 81.2
MELO3C006793.2 Cucumis melo HOM05D006266 ORTHO05D008016 1.2e-201 707.2 449 74.8
Mapoly0012s0124 Marchantia polymorpha HOM05D006266 ORTHO05D008016 5.9e-190 668.3 437 71.6
Cre02.g094300 Chlamydomonas reinhardtii HOM05D006266 ORTHO05D008016 1.7e-189 666.8 550 57.3
Cc03_g11970 Coffea canephora HOM05D006266 ORTHO05D008016 4.7e-187 658.7 369 81.3
PRCOL_00003135 Prasinoderma coloniale HOM05D006266 ORTHO05D008016 1.6e-171 607.1 586 54.1
AUR62002342 Chenopodium quinoa HOM05D006266 ORTHO05D008016 2.8e-171 606.3 441 66.2
Cfa026422 Carpinus fangiana HOM05D006266 ORTHO05D008016 2.9e-168 596.3 539 57.0
Haze_26227 Corylus avellana HOM05D006266 ORTHO05D008016 1.1e-162 577.8 564 51.6
Haze_26951 Corylus avellana HOM05D006266 ORTHO05D008016 9.9e-161 571.2 560 51.4
Zm00001eb043590 Zea mays HOM05D006266 ORTHO05D008016 1.2e-153 547.7 348 74.7
Ah.07g202330 Amaranthus hybridus HOM05D006266 ORTHO05D008016 7.6e-137 491.9 432 61.8
unitig_52.g17681 Utricularia gibba HOM05D006266 ORTHO05D008016 1.7e-120 437.6 468 53.2
SEGI_14637 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 1.3e-115 421.4 266 74.8
Eucgr.L02537 Eucalyptus grandis HOM05D006266 ORTHO05D008016 5.2e-101 372.9 202 81.2
Ah.07g202340 Amaranthus hybridus HOM05D006266 ORTHO05D008016 1.5e-100 371.3 201 81.6
FAN12G3251 Fragaria x ananassa HOM05D006266 ORTHO05D008016 1.3e-80 305.1 180 80.6
EL10Ac3g06005 Beta vulgaris HOM05D006266 ORTHO05D008016 8.6e-80 302.4 263 62.4
PGSC0003DMG400014944 Solanum tuberosum HOM05D006266 ORTHO05D008016 4.7e-78 296.6 172 77.9
Sopen02g004370 Solanum pennellii HOM05D006266 ORTHO05D008016 3.2e-74 283.9 170 78.8
Cc03_g11980 Coffea canephora HOM05D006266 ORTHO05D008016 6.6e-72 276.2 174 76.4
CSS0026769 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.6e-54 218.4 119 84.0
SEGI_11902 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 1.6e-54 218.4 150 70.0
Os10g0516300 Oryza sativa ssp. japonica HOM05D006266 ORTHO05D008016 1.3e-48 198.7 116 77.6
CSS0016449 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.1e-47 195.7 106 90.6
CSS0001057 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 2.2e-35 154.8 127 63.0
CSS0026763 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.2e-33 149.1 127 60.6
SEGI_08796 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 1.5e-31 142.1 82 76.8
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 1.9e-31 141.7 199 46.2
SEGI_29623 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 3.1e-29 134.4 83 75.9
CSS0001558 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 8.4e-27 126.3 112 60.7
CSS0004821 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 8.4e-27 126.3 112 60.7
CSS0016187 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.6e-17 95.5 78 66.7
arahy.Tifrunner.gnm1.ann1.QA6FBH Arachis hypogaea HOM05D006266 ORTHO05D008016 3.9e-16 90.9 56 82.1
Lsat_1_v5_gn_7_84681 Lactuca sativa HOM05D006266 ORTHO05D004407 2.2e-14 85.1 56 69.6
CSS0026903 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 2.6e-12 78.2 59 62.7
CSS0019028 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 1.7e-11 75.5 54 68.5
CSS0008442 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 3.2e-10 71.2 40 82.5
CSS0022444 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 3.2e-10 71.2 40 82.5
CSS0006121 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.8e-08 65.5 34 82.4
AUR62006021 Chenopodium quinoa HOM05D001494 ORTHO05D001364 5.1e-08 63.9 33 84.8
Sp4g25500 Schrenkiella parvula HOM05D000001 ORTHO05D000003 8.8e-08 63.2 81 45.7


User provided reference genes

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