Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G122500 Manihot esculenta HOM05D007972 ORTHO05D010352 3.9e-100 368.2 199 100.0
Manes.04G044100 Manihot esculenta HOM05D007972 ORTHO05D010352 1.5e-72 276.6 206 74.3
Potri.017G027900 Populus trichocarpa HOM05D007972 ORTHO05D010352 3.3e-51 205.7 201 57.7
Sabra17G0016900 Salix brachista HOM05D007972 ORTHO05D010352 2.0e-48 196.4 202 55.0
Sabra17G0017000 Salix brachista HOM05D007972 ORTHO05D010352 4.5e-48 195.3 202 55.4
QL04p029068 Quercus lobata HOM05D007972 ORTHO05D010352 5.7e-43 178.3 207 52.7
CiPaw.13G024900 Carya illinoinensis HOM05D007972 ORTHO05D010352 2.4e-41 172.9 205 52.7
Glyma.18G249100 Glycine max HOM05D007972 ORTHO05D010352 4.1e-41 172.2 198 51.0
Lalb_Chr01g0021721 Lupinus albus HOM05D007972 ORTHO05D010352 9.1e-41 171.0 194 52.1
TWI14G1321 Tripterygium wilfordii HOM05D007972 ORTHO05D010352 2.0e-40 169.9 173 56.6
Glyma.09G244400 Glycine max HOM05D007972 ORTHO05D010352 1.3e-39 167.2 195 50.3
VMungo1383G2083 Vigna mungo HOM05D007972 ORTHO05D010352 1.1e-38 164.1 191 51.8
RcHm_v2.0_Chr1g0346011 Rosa chinensis HOM05D007972 ORTHO05D010352 1.5e-38 163.7 196 49.0
TWI59G1165 Tripterygium wilfordii HOM05D007972 ORTHO05D010352 1.5e-38 163.7 195 51.3
TPR.G4718 Trifolium pratense HOM05D007972 ORTHO05D010352 8.0e-37 157.9 178 50.0
Cfa011053 Carpinus fangiana HOM05D007972 ORTHO05D010352 1.0e-36 157.5 207 50.7
Prupe.2G122000 Prunus persica HOM05D007972 ORTHO05D010352 1.4e-36 157.1 192 50.5
CANSAT25G1078 Cannabis sativa HOM05D007972 ORTHO05D010352 2.3e-36 156.4 194 49.5
Ca_08498_v3 Cicer arietinum L. HOM05D007972 ORTHO05D010352 2.3e-36 156.4 178 50.6
Ca_29723_v3 Cicer arietinum L. HOM05D007972 ORTHO05D010352 2.3e-36 156.4 178 50.6
Lj1g0012968 Lotus japonicus HOM05D007972 ORTHO05D010352 4.0e-36 155.6 181 50.3
Medtr7g092700 Medicago truncatula HOM05D007972 ORTHO05D010352 6.8e-36 154.8 195 48.7
VMungo1383G2794 Vigna mungo HOM05D007972 ORTHO05D010352 6.8e-36 154.8 180 53.3
Psat3g070000 Pisum sativum HOM05D007972 ORTHO05D010352 4.4e-35 152.1 192 47.4
Medtr7g092710 Medicago truncatula HOM05D007972 ORTHO05D010352 4.8e-34 148.7 190 45.8
TAR636G0859 Trochodendron aralioides HOM05D007972 ORTHO05D010352 4.8e-34 148.7 195 48.2
TPR.G28769 Trifolium pratense HOM05D007972 ORTHO05D010352 7.0e-33 144.8 178 46.1
Medtr7g081655 Medicago truncatula HOM05D007972 ORTHO05D010352 9.1e-33 144.4 195 48.2
MBI04_g13845_MAGBIO Magnolia biondii HOM05D007972 ORTHO05D010352 1.2e-32 144.1 193 48.2
Lj5g0008867 Lotus japonicus HOM05D007972 ORTHO05D010352 2.7e-32 142.9 190 45.3
Nn1g00786 Nelumbo nucifera HOM05D007972 ORTHO05D010352 3.5e-32 142.5 145 53.8
Oeu037442.1 Olea europaea HOM05D007972 ORTHO05D010352 3.5e-32 142.5 193 45.6
Glyma.09G244600 Glycine max HOM05D007972 ORTHO05D010352 1.0e-31 141.0 194 47.9
RcHm_v2.0_Chr1g0346041 Rosa chinensis HOM05D007972 ORTHO05D010352 1.7e-31 140.2 199 46.2
MD07G1098000 Malus domestica HOM05D007972 ORTHO05D010352 2.2e-31 139.8 181 44.8
MD02G1218900 Malus domestica HOM05D007972 ORTHO05D010352 6.5e-31 138.3 190 45.8
TPR.G14096 Trifolium pratense HOM05D007972 ORTHO05D010352 8.5e-31 137.9 191 46.6
Nitab4.5_0004837g0020 Nicotiana tabacum HOM05D007972 ORTHO05D010352 1.1e-30 137.5 194 43.8
Psat3g099040 Pisum sativum HOM05D007972 ORTHO05D010352 9.5e-30 134.4 133 57.9
Nitab4.5_0000563g0210 Nicotiana tabacum HOM05D007972 ORTHO05D010352 1.2e-29 134.0 194 42.3
Peaxi162Scf00853g00034 Petunia axillaris HOM05D007972 ORTHO05D010352 2.8e-26 122.9 192 40.1
Migut.B01509 Erythranthe guttata HOM05D007972 ORTHO05D010352 6.3e-26 121.7 187 42.8
AUR62041847 Chenopodium quinoa HOM05D007972 ORTHO05D010352 5.4e-25 118.6 182 42.3
AUR62032352 Chenopodium quinoa HOM05D007972 ORTHO05D010352 7.0e-25 118.2 176 43.8
Solyc01g089890.3 Solanum lycopersicum HOM05D007972 ORTHO05D010352 1.6e-24 117.1 183 42.1
CAN.G1585.6 Capsicum annuum HOM05D007972 ORTHO05D010352 5.9e-24 115.2 195 40.0
Eucgr.E01542 Eucalyptus grandis HOM05D007972 ORTHO05D010352 7.8e-24 114.8 191 41.4
Eucgr.E01544 Eucalyptus grandis HOM05D007972 ORTHO05D010352 3.8e-23 112.5 185 40.5
QL04p029065 Quercus lobata HOM05D007972 ORTHO05D010352 1.5e-19 100.5 136 48.5
Solyc01g089880.3 Solanum lycopersicum HOM05D007972 ORTHO05D010352 2.6e-19 99.8 190 39.5
Eucgr.E01539 Eucalyptus grandis HOM05D007972 ORTHO05D010352 3.4e-19 99.4 143 42.0
Sopen01g035720 Solanum pennellii HOM05D007972 ORTHO05D010352 3.4e-19 99.4 190 40.0
Sopen01g035730 Solanum pennellii HOM05D007972 ORTHO05D010352 3.4e-19 99.4 145 41.4
PGSC0003DMG401031172 Solanum tuberosum HOM05D007972 ORTHO05D010352 9.8e-19 97.8 196 37.8
PGSC0003DMG400031171 Solanum tuberosum HOM05D007972 ORTHO05D010352 2.2e-18 96.7 196 39.3
Phvul.008G048700 Phaseolus vulgaris HOM05D007972 ORTHO05D010352 1.1e-17 94.4 186 37.6
CAN.G1585.7 Capsicum annuum HOM05D007972 ORTHO05D010352 2.4e-17 93.2 180 38.3
Glyma.18G248700 Glycine max HOM05D007972 ORTHO05D010352 3.5e-16 89.4 194 36.1
Phvul.008G048532 Phaseolus vulgaris HOM05D007972 ORTHO05D010352 1.3e-15 87.4 93 49.5
Nn1g00784 Nelumbo nucifera HOM05D044854 ORTHO05D010352 8.9e-12 74.7 151 35.8
Sc09g0003980 Simmondsia chinensis HOM05D000490 ORTHO05D000785 4.9e-10 68.9 153 37.9
EL10Ac2g02566 Beta vulgaris HOM05D007972 ORTHO05D010352 2.4e-09 66.6 77 42.9
TPR.G12775 Trifolium pratense HOM05D000490 ORTHO05D000785 3.2e-09 66.2 163 33.1
arahy.Tifrunner.gnm1.ann1.V46WJU Arachis hypogaea HOM05D000490 ORTHO05D000785 7.0e-09 65.1 133 36.8
Sed0011012 Sechium edule HOM05D000490 ORTHO05D000785 7.0e-09 65.1 148 37.2
MD05G1204600 Malus domestica HOM05D000490 ORTHO05D000785 1.2e-08 64.3 189 35.4
Sopen09g027770 Solanum pennellii HOM05D000490 ORTHO05D000785 2.0e-08 63.5 134 34.3
Phvul.008G048466 Phaseolus vulgaris HOM05D007972 ORTHO05D010352 2.7e-08 63.2 50 58.0
MD10G1191700 Malus domestica HOM05D000490 ORTHO05D000785 3.5e-08 62.8 183 33.3
Prupe.3G051300 Prunus persica HOM05D000490 ORTHO05D000785 3.5e-08 62.8 132 40.9
MD17G1175300 Malus domestica HOM05D000490 ORTHO05D000785 6.0e-08 62.0 131 40.5
ClCG07G000640 Citrullus lanatus HOM05D000490 ORTHO05D000785 7.8e-08 61.6 134 36.6
Sabra03G0025900 Salix brachista HOM05D000490 ORTHO05D000785 7.8e-08 61.6 144 34.0
Cc04_g02070 Coffea canephora HOM05D000490 ORTHO05D000785 1.0e-07 61.2 189 36.5
CiPaw.01G226100 Carya illinoinensis HOM05D000490 ORTHO05D000785 1.3e-07 60.8 137 39.4
Manes.01G201100 Manihot esculenta HOM05D000490 ORTHO05D000785 1.3e-07 60.8 134 38.8
CsaV3_2G013680 Cucumis sativus L. HOM05D000490 ORTHO05D000785 1.7e-07 60.5 134 36.6
Lsat_1_v5_gn_5_133620 Lactuca sativa HOM05D000490 ORTHO05D000785 1.7e-07 60.5 133 36.8
SGA_v2.0_scaffold4717G54525 Striga asiatica HOM05D000490 ORTHO05D000785 1.7e-07 60.5 130 38.5
Duzib192G0560 Durio zibethinus HOM05D000490 ORTHO05D000785 2.3e-07 60.1 130 41.5
Oeu038452.1 Olea europaea HOM05D000490 ORTHO05D000785 2.3e-07 60.1 134 38.1
vmacro18800 Vaccinium macrocarpon HOM05D000490 ORTHO05D000785 2.3e-07 60.1 157 37.6
TAR365G0432 Trochodendron aralioides HOM05D000490 ORTHO05D000785 3.9e-07 59.3 134 38.8
Eucgr.E01540 Eucalyptus grandis HOM05D007972 ORTHO05D010352 5.0e-07 58.9 93 43.0
Solyc09g066000.1 Solanum lycopersicum HOM05D000490 ORTHO05D000785 5.0e-07 58.9 134 32.8
PGSC0003DMG400015078 Solanum tuberosum HOM05D000490 ORTHO05D000785 5.0e-07 58.9 134 33.6
Dinv20291 Davidia involucrata HOM05D000490 ORTHO05D000785 6.6e-07 58.5 180 36.1
Lsat_1_v5_gn_4_95340 Lactuca sativa HOM05D000490 ORTHO05D000785 6.6e-07 58.5 154 35.1
MELO3C014307.2 Cucumis melo HOM05D000490 ORTHO05D000785 8.6e-07 58.2 134 35.8
Nn6g33778 Nelumbo nucifera HOM05D044854 ORTHO05D010352 8.6e-07 58.2 140 34.3
Duzib235G1330 Durio zibethinus HOM05D000490 ORTHO05D000785 1.1e-06 57.8 138 38.4
ECA232G1248 Erigeron canadensis HOM05D000490 ORTHO05D000785 1.1e-06 57.8 127 38.6
DCAR_006650 Daucus carota HOM05D000490 ORTHO05D000785 1.5e-06 57.4 165 35.8
Glyma.20G225600 Glycine max HOM05D000490 ORTHO05D000785 1.5e-06 57.4 177 31.6
Potri.003G035200 Populus trichocarpa HOM05D000490 ORTHO05D000785 1.5e-06 57.4 132 35.6
TAR636G3500 Trochodendron aralioides HOM05D000490 ORTHO05D000785 1.5e-06 57.4 134 35.8
CSS0014374 Camellia sinensis var. sinensis HOM05D000490 ORTHO05D000785 1.9e-06 57.0 130 39.2
CSS0028104 Camellia sinensis var. sinensis HOM05D000490 ORTHO05D000785 1.9e-06 57.0 130 39.2
CiPaw.03G258500 Carya illinoinensis HOM05D000490 ORTHO05D000785 1.9e-06 57.0 156 33.3
Hma1.2p1_0817F.1_g223150 Hydrangea macrophylla HOM05D000490 ORTHO05D000785 1.9e-06 57.0 185 34.1
MBI04_g47791_MAGBIO Magnolia biondii HOM05D000490 ORTHO05D000785 1.9e-06 57.0 151 33.8
TWI18G0217 Tripterygium wilfordii HOM05D000490 ORTHO05D000785 1.9e-06 57.0 168 33.3
CSS0026189 Camellia sinensis var. sinensis HOM05D000490 ORTHO05D000785 2.5e-06 56.6 130 39.2
FvH4_6g33130 Fragaria vesca HOM05D000490 ORTHO05D000785 2.5e-06 56.6 137 39.4
Gohir.A02G115800 Gossypium hirsutum HOM05D000490 ORTHO05D000785 2.5e-06 56.6 138 39.1
PGR102G3021 Punica granatum HOM05D000490 ORTHO05D000785 2.5e-06 56.6 129 35.7
TAR362G0752 Trochodendron aralioides HOM05D000490 ORTHO05D000785 2.5e-06 56.6 161 33.5
Dinv08150 Davidia involucrata HOM05D000490 ORTHO05D000785 3.3e-06 56.2 138 37.0
FvH4_2g22330 Fragaria vesca HOM05D000490 ORTHO05D000785 3.3e-06 56.2 170 35.9
Glyma.10G163000 Glycine max HOM05D000490 ORTHO05D000785 3.3e-06 56.2 152 30.9
Oeu026741.1 Olea europaea HOM05D000490 ORTHO05D000785 3.3e-06 56.2 139 37.4
Rhsim01G0268900 Rhododendron simsii HOM05D000490 ORTHO05D000785 3.3e-06 56.2 177 31.6
RcHm_v2.0_Chr6g0289341 Rosa chinensis HOM05D000490 ORTHO05D000785 3.3e-06 56.2 141 35.5
Sc12g0010180 Simmondsia chinensis HOM05D000490 ORTHO05D000785 3.3e-06 56.2 150 35.3
Aqoxy7G01237 Aquilegia oxysepala HOM05D000490 ORTHO05D000785 4.3e-06 55.8 132 36.4
CSS0039686 Camellia sinensis var. sinensis HOM05D000490 ORTHO05D000785 4.3e-06 55.8 131 37.4
FAN05G4546 Fragaria x ananassa HOM05D000490 ORTHO05D000785 4.3e-06 55.8 137 38.7
FAN27G2513 Fragaria x ananassa HOM05D000490 ORTHO05D000785 4.3e-06 55.8 170 35.9
PSO063G6694 Papaver somniferum HOM05D000490 ORTHO05D000785 4.3e-06 55.8 126 40.5
Phvul.007G188100 Phaseolus vulgaris HOM05D000490 ORTHO05D000785 4.3e-06 55.8 165 31.5
Prupe.7G211500 Prunus persica HOM05D000490 ORTHO05D000785 4.3e-06 55.8 135 36.3
PGR004G2788 Punica granatum HOM05D000490 ORTHO05D000785 4.3e-06 55.8 178 32.6
ATR0665G200 Amborella trichopoda HOM05D000490 ORTHO05D000785 5.6e-06 55.5 160 31.2
ATR0716G070 Amborella trichopoda HOM05D000490 ORTHO05D000785 5.6e-06 55.5 150 34.7
FAN14G3213 Fragaria x ananassa HOM05D000490 ORTHO05D000785 5.6e-06 55.5 137 39.4
HanXRQChr10g0313111 Helianthus annuus HOM05D000490 ORTHO05D000785 5.6e-06 55.5 133 37.6
Potri.002G044000 Populus trichocarpa HOM05D000490 ORTHO05D000785 5.6e-06 55.5 134 35.8
Prupe.8G231200 Prunus persica HOM05D000490 ORTHO05D000785 5.6e-06 55.5 143 37.1
VMungo0720G1665 Vigna mungo HOM05D000490 ORTHO05D000785 5.6e-06 55.5 151 34.4
COL.COLO4_30645 Corchorus olitorius HOM05D000490 ORTHO05D000785 7.3e-06 55.1 136 40.4
Eucgr.F03124 Eucalyptus grandis HOM05D000490 ORTHO05D000785 7.3e-06 55.1 140 37.1
FAN09G1202 Fragaria x ananassa HOM05D000490 ORTHO05D000785 7.3e-06 55.1 137 38.7
Gohir.D03G056700 Gossypium hirsutum HOM05D000490 ORTHO05D000785 7.3e-06 55.1 138 38.4
Gohir.D10G062200 Gossypium hirsutum HOM05D000490 ORTHO05D000785 7.3e-06 55.1 138 41.3
Gorai.003G059900 Gossypium raimondii HOM05D000490 ORTHO05D000785 7.3e-06 55.1 138 38.4
Gorai.011G066300 Gossypium raimondii HOM05D000490 ORTHO05D000785 7.3e-06 55.1 138 41.3
Lj9P662T17 Lonicera japonica HOM05D000490 ORTHO05D000785 7.3e-06 55.1 134 35.8
PSO832G2301 Papaver somniferum HOM05D000490 ORTHO05D000785 7.3e-06 55.1 126 37.3
CANSAT56G0551 Cannabis sativa HOM05D000490 ORTHO05D000785 9.5e-06 54.7 138 34.8
Cc02_g30800 Coffea canephora HOM05D000490 ORTHO05D000785 9.5e-06 54.7 149 32.9
Medtr1g080760 Medicago truncatula HOM05D000490 ORTHO05D000785 9.5e-06 54.7 157 33.1
Oeu002511.1 Olea europaea HOM05D000490 ORTHO05D000785 9.5e-06 54.7 174 35.1
Sabra05G0168100 Salix brachista HOM05D000490 ORTHO05D000785 9.5e-06 54.7 128 37.5
PGSC0003DMG400002504 Solanum tuberosum HOM05D000490 ORTHO05D000785 9.5e-06 54.7 132 37.1
unitig_749.g14047 Utricularia gibba HOM05D000490 ORTHO05D000785 9.5e-06 54.7 127 37.8
VMungo0720G3058 Vigna mungo HOM05D000490 ORTHO05D000785 9.5e-06 54.7 161 33.5


User provided reference genes

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