Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G121000 Manihot esculenta HOM05D008235 ORTHO05D009358 0.0e+00 1209.1 597 100.0
Manes.04G042909 Manihot esculenta HOM05D008235 ORTHO05D009358 7.9e-197 691.0 570 66.3
Potri.017G029800 Populus trichocarpa HOM05D008235 ORTHO05D009358 8.9e-132 474.9 569 50.3
Potri.007G128500 Populus trichocarpa HOM05D008235 ORTHO05D009358 1.2e-131 474.6 567 51.7
Sabra07G0105000 Salix brachista HOM05D008235 ORTHO05D009358 3.6e-117 426.4 593 46.7
Sabra17G0019200 Salix brachista HOM05D008235 ORTHO05D009358 6.8e-116 422.2 532 48.9
QL10p049494 Quercus lobata HOM05D008235 ORTHO05D009358 1.1e-84 318.5 584 39.6
Haze_01504 Corylus avellana HOM05D008235 ORTHO05D009358 4.8e-77 293.1 560 38.0
Thecc.04G179500 Theobroma cacao HOM05D008235 ORTHO05D009358 9.3e-73 278.9 592 37.7
Duzib212G0859 Durio zibethinus HOM05D008235 ORTHO05D009358 3.7e-69 266.9 589 36.5
Ciclev10019428m.g Citrus clementina HOM05D008235 ORTHO05D009358 6.9e-68 262.7 582 36.9
Gorai.011G142400 Gossypium raimondii HOM05D008235 ORTHO05D009358 2.5e-62 244.2 586 33.3
Dinv22732 Davidia involucrata HOM05D008235 ORTHO05D009358 5.9e-59 233.0 507 36.7
Gohir.D02G114100 Gossypium hirsutum HOM05D008235 ORTHO05D009358 2.9e-58 230.7 589 34.0
Gorai.005G128900 Gossypium raimondii HOM05D008235 ORTHO05D009358 7.4e-54 216.1 589 33.1
Dinv44188 Davidia involucrata HOM05D008235 ORTHO05D009358 3.7e-53 213.8 583 33.1
Gohir.A10G137600 Gossypium hirsutum HOM05D008235 ORTHO05D009358 4.1e-52 210.3 509 33.6
CANSAT78G2326 Cannabis sativa HOM05D008235 ORTHO05D009358 4.7e-48 196.8 575 30.4
TAR365G0029 Trochodendron aralioides HOM05D008235 ORTHO05D009358 4.4e-46 190.3 428 33.9
MD04G1040900 Malus domestica HOM05D008235 ORTHO05D009358 7.4e-46 189.5 409 35.9
Nn1g09629 Nelumbo nucifera HOM05D008235 ORTHO05D009358 2.2e-42 177.9 643 29.7
Actinidia35979 Actinidia chinensis HOM05D008235 ORTHO05D009358 1.6e-40 171.8 577 28.4
CiPaw.01G099800 Carya illinoinensis HOM05D008235 ORTHO05D009358 3.6e-40 170.6 363 34.2
Duzib268G0443 Durio zibethinus HOM05D008235 ORTHO05D009358 3.0e-39 167.5 427 31.9
Actinidia34601 Actinidia chinensis HOM05D008235 ORTHO05D009358 5.2e-39 166.8 577 29.1
Gohir.D10G129000 Gossypium hirsutum HOM05D008235 ORTHO05D009358 4.4e-38 163.7 429 30.8
GSVIVG01010760001 Vitis vinifera HOM05D008235 ORTHO05D009358 7.4e-38 162.9 545 29.4
Gohir.A03G088800 Gossypium hirsutum HOM05D008235 ORTHO05D009358 1.3e-37 162.2 541 30.9
CSS0022265 Camellia sinensis var. sinensis HOM05D008235 ORTHO05D009358 1.6e-35 155.2 599 27.0
CSS0049607 Camellia sinensis var. sinensis HOM05D008235 ORTHO05D009358 1.1e-33 149.1 531 27.1
Ca_20789_v3 Cicer arietinum L. HOM05D008235 ORTHO05D009358 3.2e-33 147.5 380 31.8
Cpa.g.sc9.283 Carica papaya HOM05D008235 ORTHO05D009358 1.2e-32 145.6 580 29.0
COL.COLO4_07668 Corchorus olitorius HOM05D008235 ORTHO05D009358 3.6e-32 144.1 319 34.5
Lj3g0014084 Lotus japonicus HOM05D008235 ORTHO05D009358 6.1e-32 143.3 395 32.4
Lalb_Chr22g0352131 Lupinus albus HOM05D008235 ORTHO05D009358 2.3e-31 141.4 437 33.0
arahy.Tifrunner.gnm1.ann1.TK6P88 Arachis hypogaea HOM05D008235 ORTHO05D009358 3.3e-30 137.5 396 30.8
arahy.Tifrunner.gnm1.ann1.V6VI7P Arachis hypogaea HOM05D008235 ORTHO05D009358 7.5e-30 136.3 392 31.4
Phvul.011G054200 Phaseolus vulgaris HOM05D008235 ORTHO05D009358 2.2e-29 134.8 433 30.9
Sp5g03710 Schrenkiella parvula HOM05D009929 ORTHO05D009358 1.1e-28 132.5 501 30.9
VMungo1127G1046 Vigna mungo HOM05D008235 ORTHO05D009358 1.8e-28 131.7 420 31.0
Glyma.11G127600 Glycine max HOM05D008235 ORTHO05D009358 2.7e-27 127.9 366 31.4
THA.LOC104800392 Tarenaya hassleriana HOM05D009929 ORTHO05D009358 5.9e-27 126.7 497 28.8
TAR636G0036 Trochodendron aralioides HOM05D008235 ORTHO05D009358 6.5e-26 123.2 438 28.1
MELO3C017713.2 Cucumis melo HOM05D008235 ORTHO05D009358 4.2e-25 120.6 394 31.0
CsaV3_4G003430 Cucumis sativus L. HOM05D008235 ORTHO05D009358 1.2e-24 119.0 389 31.6
Glyma.12G052200 Glycine max HOM05D008235 ORTHO05D009358 3.6e-24 117.5 372 30.6
RhsimUnG0195000 Rhododendron simsii HOM05D008235 ORTHO05D009358 1.8e-23 115.2 485 26.6
THA.LOC104803712 Tarenaya hassleriana HOM05D009929 ORTHO05D009358 8.8e-23 112.8 459 26.1
ClCG07G015680 Citrullus lanatus HOM05D008235 ORTHO05D009358 9.8e-22 109.4 380 29.2
Glyma.13G344300 Glycine max HOM05D008235 ORTHO05D009358 2.8e-21 107.8 298 32.2
AT3G59430 Arabidopsis thaliana HOM05D009929 ORTHO05D009358 6.3e-21 106.7 511 28.6
Carub.0005s2617 Capsella rubella HOM05D009929 ORTHO05D009358 1.1e-20 105.9 510 29.0
Sed0015774 Sechium edule HOM05D008235 ORTHO05D009358 1.8e-20 105.1 379 30.6
EL10Ac3g05943 Beta vulgaris HOM05D019141 ORTHO05D009358 3.1e-20 104.4 343 30.3
AL5G41340 Arabidopsis lyrata HOM05D009929 ORTHO05D009358 4.1e-20 104.0 511 28.6
AUR62002309 Chenopodium quinoa HOM05D019141 ORTHO05D009358 7.0e-20 103.2 494 27.9
Aqoxy2G04121 Aquilegia oxysepala HOM05D008235 ORTHO05D009358 1.2e-19 102.4 596 27.0
Aa31LG1G25120 Aethionema arabicum HOM05D009929 ORTHO05D006942 1.6e-19 102.1 439 27.3
BraA09t40607Z Brassica rapa HOM05D009929 ORTHO05D009358 2.7e-19 101.3 386 30.3
BcaC07g40284 Brassica carinata HOM05D009929 ORTHO05D009358 4.5e-19 100.5 420 29.3
C08p34440 Brassica napus HOM05D009929 ORTHO05D009358 4.5e-19 100.5 420 29.3
BolC8t51045H Brassica oleracea HOM05D009929 ORTHO05D009358 4.5e-19 100.5 420 29.3
Eucgr.A00083 Eucalyptus grandis HOM05D008235 ORTHO05D009358 1.3e-18 99.0 291 31.3
BcaC07g40472 Brassica carinata HOM05D009929 ORTHO05D009358 2.3e-18 98.2 360 30.6
AUR62015381 Chenopodium quinoa HOM05D019141 ORTHO05D009358 2.9e-18 97.8 438 29.5
Rhsim09G0027400 Rhododendron simsii HOM05D008235 ORTHO05D009358 2.9e-18 97.8 292 30.1
Thhalv10005962m.g Eutrema salsugineum HOM05D009929 ORTHO05D009358 2.5e-17 94.7 500 27.6
A09p51710 Brassica napus HOM05D009929 ORTHO05D009358 1.2e-16 92.4 420 28.3
vmacro00622 Vaccinium macrocarpon HOM05D008235 ORTHO05D009358 1.2e-16 92.4 444 26.1
CARHR169830 Cardamine hirsuta HOM05D009929 ORTHO05D009358 4.7e-16 90.5 263 31.6
TPR.G34237 Trifolium pratense HOM05D008235 ORTHO05D009358 4.4e-14 84.0 372 28.0
ATR0824G133 Amborella trichopoda HOM05D008235 ORTHO05D009358 9.8e-14 82.8 258 29.1
Medtr4g067260 Medicago truncatula HOM05D008235 ORTHO05D009358 9.8e-14 82.8 414 28.5
Ah.13g072860 Amaranthus hybridus HOM05D019141 ORTHO05D009358 1.4e-12 79.0 343 25.9
Duzib151G0752 Durio zibethinus HOM05D008235 ORTHO05D009358 1.2e-11 75.9 144 40.3
PSO675G1581 Papaver somniferum HOM05D066249 ORTHO05D009358 1.0e-10 72.8 385 27.0
Peaxi162Scf01052g00325 Petunia axillaris HOM05D014650 ORTHO05D009358 3.9e-10 70.9 575 23.0
Sopen05g029150 Solanum pennellii HOM05D014650 ORTHO05D022197 3.9e-10 70.9 624 22.8
Solyc05g050740.3 Solanum lycopersicum HOM05D014650 ORTHO05D009358 5.0e-10 70.5 355 24.5
CAN.G112.20 Capsicum annuum HOM05D014650 ORTHO05D022197 6.6e-10 70.1 658 23.3
Sc13g0006760 Simmondsia chinensis HOM05D008235 ORTHO05D009358 6.6e-10 70.1 492 23.0
Os09g0514700 Oryza sativa ssp. japonica HOM05D028297 ORTHO05D037162 1.5e-09 68.9 262 27.1
PSO017G5357 Papaver somniferum HOM05D066249 ORTHO05D009358 2.5e-09 68.2 387 25.8
Oeu053824.1 Olea europaea HOM05D008235 ORTHO05D009358 2.1e-08 65.1 494 24.7
Hund03161 Selenicereus undatus HOM05D019141 ORTHO05D009358 1.8e-07 62.0 392 25.3
Cc03_g12910 Coffea canephora HOM05D008235 ORTHO05D009358 6.8e-07 60.1 392 22.4
Glyma.15G030050 Glycine max HOM05D008235 ORTHO05D009358 1.5e-06 58.9 155 35.5
Phvul.005G153000 Phaseolus vulgaris HOM05D008235 ORTHO05D009358 1.5e-06 58.9 151 33.1
Psat7g208600 Pisum sativum HOM05D008235 ORTHO05D009358 2.6e-06 58.2 52 50.0


User provided reference genes

Program Settings